Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02125 and DDA3937_RS02130 overlap by 38 nucleotides DDA3937_RS02130 and DDA3937_RS02135 are separated by 106 nucleotides DDA3937_RS02135 and DDA3937_RS02140 overlap by 4 nucleotides
DDA3937_RS02125: DDA3937_RS02125 - MFS transporter, at 472,983 to 474,374
_RS02125
DDA3937_RS02130: DDA3937_RS02130 - PLP-dependent aminotransferase family protein, at 474,337 to 475,821
_RS02130
DDA3937_RS02135: DDA3937_RS02135 - GNAT family N-acetyltransferase, at 475,928 to 476,377
_RS02135
DDA3937_RS02140: DDA3937_RS02140 - carboxymuconolactone decarboxylase family protein, at 476,374 to 476,805
_RS02140
Position (kb) 474
475
476 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 473.404 kb on - strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.414 kb on + strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.415 kb on - strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.534 kb on + strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.535 kb on - strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.536 kb on + strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.537 kb on - strand, within DDA3937_RS02125 at 473.743 kb on - strand, within DDA3937_RS02125 at 473.772 kb on + strand, within DDA3937_RS02125 at 473.773 kb on - strand, within DDA3937_RS02125 at 473.801 kb on + strand, within DDA3937_RS02125 at 473.801 kb on + strand, within DDA3937_RS02125 at 473.801 kb on + strand, within DDA3937_RS02125 at 473.809 kb on + strand, within DDA3937_RS02125 at 473.828 kb on + strand, within DDA3937_RS02125 at 473.829 kb on - strand, within DDA3937_RS02125 at 473.884 kb on - strand, within DDA3937_RS02125 at 474.007 kb on + strand, within DDA3937_RS02125 at 474.008 kb on - strand, within DDA3937_RS02125 at 474.102 kb on - strand, within DDA3937_RS02125 at 474.373 kb on - strand at 474.487 kb on + strand, within DDA3937_RS02130 at 474.488 kb on - strand, within DDA3937_RS02130 at 474.643 kb on + strand, within DDA3937_RS02130 at 474.643 kb on + strand, within DDA3937_RS02130 at 474.643 kb on + strand, within DDA3937_RS02130 at 474.644 kb on - strand, within DDA3937_RS02130 at 474.644 kb on - strand, within DDA3937_RS02130 at 474.684 kb on - strand, within DDA3937_RS02130 at 474.701 kb on + strand, within DDA3937_RS02130 at 474.724 kb on - strand, within DDA3937_RS02130 at 474.724 kb on - strand, within DDA3937_RS02130 at 474.751 kb on - strand, within DDA3937_RS02130 at 474.789 kb on + strand, within DDA3937_RS02130 at 474.790 kb on - strand, within DDA3937_RS02130 at 474.851 kb on + strand, within DDA3937_RS02130 at 474.851 kb on + strand, within DDA3937_RS02130 at 474.851 kb on + strand, within DDA3937_RS02130 at 474.852 kb on - strand, within DDA3937_RS02130 at 474.899 kb on + strand, within DDA3937_RS02130 at 474.899 kb on + strand, within DDA3937_RS02130 at 474.899 kb on + strand, within DDA3937_RS02130 at 474.900 kb on - strand, within DDA3937_RS02130 at 474.904 kb on - strand, within DDA3937_RS02130 at 474.904 kb on - strand, within DDA3937_RS02130 at 474.918 kb on + strand, within DDA3937_RS02130 at 474.940 kb on + strand, within DDA3937_RS02130 at 474.974 kb on + strand, within DDA3937_RS02130 at 474.974 kb on + strand, within DDA3937_RS02130 at 474.975 kb on - strand, within DDA3937_RS02130 at 474.975 kb on - strand, within DDA3937_RS02130 at 474.975 kb on - strand, within DDA3937_RS02130 at 475.051 kb on + strand, within DDA3937_RS02130 at 475.109 kb on + strand, within DDA3937_RS02130 at 475.110 kb on - strand, within DDA3937_RS02130 at 475.220 kb on + strand at 475.220 kb on + strand, within DDA3937_RS02130 at 475.221 kb on - strand, within DDA3937_RS02130 at 475.221 kb on - strand, within DDA3937_RS02130 at 475.258 kb on + strand, within DDA3937_RS02130 at 475.258 kb on + strand, within DDA3937_RS02130 at 475.259 kb on - strand, within DDA3937_RS02130 at 475.259 kb on - strand, within DDA3937_RS02130 at 475.259 kb on - strand, within DDA3937_RS02130 at 475.261 kb on - strand, within DDA3937_RS02130 at 475.340 kb on + strand, within DDA3937_RS02130 at 475.340 kb on + strand, within DDA3937_RS02130 at 475.341 kb on - strand, within DDA3937_RS02130 at 475.350 kb on + strand, within DDA3937_RS02130 at 475.350 kb on + strand, within DDA3937_RS02130 at 475.351 kb on - strand, within DDA3937_RS02130 at 475.593 kb on + strand, within DDA3937_RS02130 at 475.620 kb on - strand, within DDA3937_RS02130 at 475.643 kb on + strand, within DDA3937_RS02130 at 475.696 kb on + strand at 475.696 kb on + strand at 475.723 kb on + strand at 475.724 kb on - strand at 475.760 kb on + strand at 475.825 kb on + strand at 475.826 kb on - strand at 475.826 kb on - strand at 475.826 kb on - strand at 475.839 kb on + strand at 475.839 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.846 kb on + strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.880 kb on + strand at 475.881 kb on - strand at 475.907 kb on - strand at 475.914 kb on + strand at 475.915 kb on - strand at 475.957 kb on + strand at 475.958 kb on - strand at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.974 kb on + strand, within DDA3937_RS02135 at 475.984 kb on + strand, within DDA3937_RS02135 at 475.985 kb on - strand, within DDA3937_RS02135 at 475.985 kb on - strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.013 kb on + strand, within DDA3937_RS02135 at 476.043 kb on + strand, within DDA3937_RS02135 at 476.044 kb on - strand, within DDA3937_RS02135 at 476.044 kb on - strand, within DDA3937_RS02135 at 476.157 kb on - strand, within DDA3937_RS02135 at 476.157 kb on - strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.172 kb on + strand, within DDA3937_RS02135 at 476.173 kb on - strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.228 kb on + strand, within DDA3937_RS02135 at 476.229 kb on - strand, within DDA3937_RS02135 at 476.280 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.284 kb on + strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.285 kb on - strand, within DDA3937_RS02135 at 476.292 kb on + strand, within DDA3937_RS02135 at 476.345 kb on - strand at 476.371 kb on - strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.373 kb on + strand at 476.374 kb on - strand at 476.374 kb on - strand at 476.385 kb on - strand at 476.385 kb on - strand at 476.385 kb on - strand at 476.419 kb on + strand, within DDA3937_RS02140 at 476.419 kb on + strand, within DDA3937_RS02140 at 476.420 kb on - strand, within DDA3937_RS02140 at 476.480 kb on + strand, within DDA3937_RS02140 at 476.480 kb on + strand, within DDA3937_RS02140 at 476.481 kb on - strand, within DDA3937_RS02140 at 476.481 kb on - strand, within DDA3937_RS02140 at 476.491 kb on + strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.492 kb on - strand, within DDA3937_RS02140 at 476.567 kb on + strand, within DDA3937_RS02140 at 476.567 kb on + strand, within DDA3937_RS02140 at 476.568 kb on - strand, within DDA3937_RS02140 at 476.568 kb on - strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.610 kb on + strand, within DDA3937_RS02140 at 476.611 kb on - strand, within DDA3937_RS02140 at 476.700 kb on + strand, within DDA3937_RS02140 at 476.701 kb on - strand, within DDA3937_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 473,404 - DDA3937_RS02125 0.30 +1.7 473,414 + DDA3937_RS02125 0.31 -0.2 473,414 + DDA3937_RS02125 0.31 -1.0 473,414 + DDA3937_RS02125 0.31 +1.6 473,415 - DDA3937_RS02125 0.31 +1.7 473,415 - DDA3937_RS02125 0.31 +1.9 473,415 - DDA3937_RS02125 0.31 -1.7 473,534 + DDA3937_RS02125 0.40 +1.3 473,534 + DDA3937_RS02125 0.40 +1.7 473,534 + DDA3937_RS02125 0.40 -2.3 473,534 + DDA3937_RS02125 0.40 -1.1 473,535 - DDA3937_RS02125 0.40 -1.2 473,535 - DDA3937_RS02125 0.40 -2.2 473,535 - DDA3937_RS02125 0.40 +1.1 473,535 - DDA3937_RS02125 0.40 +0.0 473,535 - DDA3937_RS02125 0.40 +0.8 473,535 - DDA3937_RS02125 0.40 -1.3 473,536 + DDA3937_RS02125 0.40 +0.7 473,536 + DDA3937_RS02125 0.40 +0.1 473,536 + DDA3937_RS02125 0.40 -2.2 473,537 - DDA3937_RS02125 0.40 +2.2 473,537 - DDA3937_RS02125 0.40 +0.7 473,743 - DDA3937_RS02125 0.55 -0.3 473,772 + DDA3937_RS02125 0.57 +0.8 473,773 - DDA3937_RS02125 0.57 -0.9 473,801 + DDA3937_RS02125 0.59 +0.7 473,801 + DDA3937_RS02125 0.59 -1.3 473,801 + DDA3937_RS02125 0.59 -1.4 473,809 + DDA3937_RS02125 0.59 -3.7 473,828 + DDA3937_RS02125 0.61 +0.1 473,829 - DDA3937_RS02125 0.61 -0.0 473,884 - DDA3937_RS02125 0.65 +1.9 474,007 + DDA3937_RS02125 0.74 -1.7 474,008 - DDA3937_RS02125 0.74 -0.5 474,102 - DDA3937_RS02125 0.80 +2.0 474,373 - -0.9 474,487 + DDA3937_RS02130 0.10 +1.6 474,488 - DDA3937_RS02130 0.10 +1.4 474,643 + DDA3937_RS02130 0.21 +1.1 474,643 + DDA3937_RS02130 0.21 -2.5 474,643 + DDA3937_RS02130 0.21 -1.2 474,644 - DDA3937_RS02130 0.21 -1.3 474,644 - DDA3937_RS02130 0.21 +0.3 474,684 - DDA3937_RS02130 0.23 -1.0 474,701 + DDA3937_RS02130 0.25 -2.7 474,724 - DDA3937_RS02130 0.26 -1.3 474,724 - DDA3937_RS02130 0.26 +0.5 474,751 - DDA3937_RS02130 0.28 -0.9 474,789 + DDA3937_RS02130 0.30 +0.1 474,790 - DDA3937_RS02130 0.31 -0.8 474,851 + DDA3937_RS02130 0.35 -0.5 474,851 + DDA3937_RS02130 0.35 -0.7 474,851 + DDA3937_RS02130 0.35 +0.4 474,852 - DDA3937_RS02130 0.35 -1.3 474,899 + DDA3937_RS02130 0.38 -0.7 474,899 + DDA3937_RS02130 0.38 -2.0 474,899 + DDA3937_RS02130 0.38 -1.3 474,900 - DDA3937_RS02130 0.38 -0.0 474,904 - DDA3937_RS02130 0.38 +0.0 474,904 - DDA3937_RS02130 0.38 -0.9 474,918 + DDA3937_RS02130 0.39 -0.7 474,940 + DDA3937_RS02130 0.41 -1.2 474,974 + DDA3937_RS02130 0.43 +0.5 474,974 + DDA3937_RS02130 0.43 -0.8 474,975 - DDA3937_RS02130 0.43 -0.7 474,975 - DDA3937_RS02130 0.43 -0.9 474,975 - DDA3937_RS02130 0.43 +1.1 475,051 + DDA3937_RS02130 0.48 -1.8 475,109 + DDA3937_RS02130 0.52 -0.3 475,110 - DDA3937_RS02130 0.52 -3.4 475,220 + +1.7 475,220 + DDA3937_RS02130 0.59 -0.4 475,221 - DDA3937_RS02130 0.60 +0.8 475,221 - DDA3937_RS02130 0.60 -1.2 475,258 + DDA3937_RS02130 0.62 -0.8 475,258 + DDA3937_RS02130 0.62 +1.3 475,259 - DDA3937_RS02130 0.62 +1.3 475,259 - DDA3937_RS02130 0.62 +1.4 475,259 - DDA3937_RS02130 0.62 -0.3 475,261 - DDA3937_RS02130 0.62 -1.2 475,340 + DDA3937_RS02130 0.68 +0.8 475,340 + DDA3937_RS02130 0.68 -2.6 475,341 - DDA3937_RS02130 0.68 +0.9 475,350 + DDA3937_RS02130 0.68 +0.8 475,350 + DDA3937_RS02130 0.68 -1.8 475,351 - DDA3937_RS02130 0.68 +0.3 475,593 + DDA3937_RS02130 0.85 -1.5 475,620 - DDA3937_RS02130 0.86 -0.5 475,643 + DDA3937_RS02130 0.88 +2.0 475,696 + -3.6 475,696 + -1.3 475,723 + +1.7 475,724 - +2.0 475,760 + -0.3 475,825 + -3.5 475,826 - -0.9 475,826 - +1.7 475,826 - +1.3 475,839 + -0.2 475,839 + -2.5 475,846 + +1.5 475,846 + -0.7 475,846 + -0.2 475,846 + +2.7 475,847 - +0.8 475,847 - -1.9 475,847 - +1.8 475,880 + +0.2 475,880 + +0.1 475,880 + +0.1 475,880 + +0.1 475,881 - +0.8 475,907 - +0.4 475,914 + -0.4 475,915 - +0.2 475,957 + +0.7 475,958 - -1.5 475,974 + DDA3937_RS02135 0.10 -0.7 475,974 + DDA3937_RS02135 0.10 -3.9 475,974 + DDA3937_RS02135 0.10 +2.0 475,974 + DDA3937_RS02135 0.10 +1.2 475,984 + DDA3937_RS02135 0.12 +1.1 475,985 - DDA3937_RS02135 0.13 -3.1 475,985 - DDA3937_RS02135 0.13 +0.9 476,013 + DDA3937_RS02135 0.19 +1.3 476,013 + DDA3937_RS02135 0.19 -3.3 476,013 + DDA3937_RS02135 0.19 -0.3 476,043 + DDA3937_RS02135 0.26 +0.3 476,044 - DDA3937_RS02135 0.26 -1.5 476,044 - DDA3937_RS02135 0.26 -0.5 476,157 - DDA3937_RS02135 0.51 -1.0 476,157 - DDA3937_RS02135 0.51 +1.3 476,172 + DDA3937_RS02135 0.54 -0.9 476,172 + DDA3937_RS02135 0.54 +0.2 476,172 + DDA3937_RS02135 0.54 -2.5 476,172 + DDA3937_RS02135 0.54 -0.9 476,173 - DDA3937_RS02135 0.54 -0.7 476,228 + DDA3937_RS02135 0.67 +0.4 476,228 + DDA3937_RS02135 0.67 -2.9 476,228 + DDA3937_RS02135 0.67 +1.5 476,228 + DDA3937_RS02135 0.67 +1.0 476,228 + DDA3937_RS02135 0.67 -2.3 476,229 - DDA3937_RS02135 0.67 -1.2 476,280 + DDA3937_RS02135 0.78 -0.5 476,284 + DDA3937_RS02135 0.79 +0.3 476,284 + DDA3937_RS02135 0.79 +0.9 476,284 + DDA3937_RS02135 0.79 -0.3 476,284 + DDA3937_RS02135 0.79 -0.5 476,285 - DDA3937_RS02135 0.79 -1.2 476,285 - DDA3937_RS02135 0.79 -0.6 476,285 - DDA3937_RS02135 0.79 -1.9 476,292 + DDA3937_RS02135 0.81 +0.1 476,345 - +1.2 476,371 - -1.2 476,373 + +1.0 476,373 + -1.9 476,373 + +0.2 476,373 + +1.6 476,374 - +0.1 476,374 - -1.7 476,385 - -1.8 476,385 - -0.5 476,385 - -2.2 476,419 + DDA3937_RS02140 0.10 +0.4 476,419 + DDA3937_RS02140 0.10 -0.1 476,420 - DDA3937_RS02140 0.11 -0.3 476,480 + DDA3937_RS02140 0.25 +0.7 476,480 + DDA3937_RS02140 0.25 +0.2 476,481 - DDA3937_RS02140 0.25 +1.2 476,481 - DDA3937_RS02140 0.25 -2.6 476,491 + DDA3937_RS02140 0.27 +1.0 476,492 - DDA3937_RS02140 0.27 -0.4 476,492 - DDA3937_RS02140 0.27 +0.3 476,492 - DDA3937_RS02140 0.27 -2.8 476,492 - DDA3937_RS02140 0.27 -1.7 476,492 - DDA3937_RS02140 0.27 +1.4 476,567 + DDA3937_RS02140 0.45 -1.4 476,567 + DDA3937_RS02140 0.45 +1.3 476,568 - DDA3937_RS02140 0.45 +0.8 476,568 - DDA3937_RS02140 0.45 -0.3 476,610 + DDA3937_RS02140 0.55 -1.2 476,610 + DDA3937_RS02140 0.55 +1.7 476,610 + DDA3937_RS02140 0.55 -0.7 476,611 - DDA3937_RS02140 0.55 -0.7 476,700 + DDA3937_RS02140 0.75 -0.3 476,701 - DDA3937_RS02140 0.76 -1.3
Or see this region's nucleotide sequence