Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01740 and DDA3937_RS01745 are separated by 403 nucleotides DDA3937_RS01745 and DDA3937_RS01750 overlap by 1 nucleotides DDA3937_RS01750 and DDA3937_RS01755 are separated by 204 nucleotides
DDA3937_RS01740: DDA3937_RS01740 - outer membrane channel protein TolC, at 385,387 to 386,799
_RS01740
DDA3937_RS01745: DDA3937_RS01745 - ADP-ribose diphosphatase, at 387,203 to 387,838
_RS01745
DDA3937_RS01750: DDA3937_RS01750 - DUF1249 family protein, at 387,838 to 388,260
_RS01750
DDA3937_RS01755: DDA3937_RS01755 - 3',5'-cyclic-AMP phosphodiesterase, at 388,465 to 389,292
_RS01755
Position (kb) 387
388 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 386.361 kb on - strand, within DDA3937_RS01740 at 386.387 kb on - strand, within DDA3937_RS01740 at 386.396 kb on + strand, within DDA3937_RS01740 at 386.420 kb on - strand, within DDA3937_RS01740 at 386.482 kb on + strand, within DDA3937_RS01740 at 386.586 kb on - strand, within DDA3937_RS01740 at 386.586 kb on - strand, within DDA3937_RS01740 at 386.592 kb on - strand, within DDA3937_RS01740 at 386.715 kb on - strand at 386.852 kb on + strand at 386.853 kb on - strand at 386.853 kb on - strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.854 kb on + strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.855 kb on - strand at 386.890 kb on - strand at 386.936 kb on + strand at 386.941 kb on + strand at 386.942 kb on - strand at 386.942 kb on - strand at 386.942 kb on - strand at 386.945 kb on + strand at 387.036 kb on + strand at 387.066 kb on - strand at 387.119 kb on - strand at 387.119 kb on - strand at 387.119 kb on - strand at 387.202 kb on + strand at 387.218 kb on - strand at 387.218 kb on - strand at 387.230 kb on - strand at 387.236 kb on - strand at 387.249 kb on + strand at 387.249 kb on + strand at 387.250 kb on - strand at 387.256 kb on + strand at 387.275 kb on + strand, within DDA3937_RS01745 at 387.275 kb on + strand, within DDA3937_RS01745 at 387.275 kb on + strand, within DDA3937_RS01745 at 387.276 kb on - strand, within DDA3937_RS01745 at 387.395 kb on + strand, within DDA3937_RS01745 at 387.395 kb on + strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.396 kb on - strand, within DDA3937_RS01745 at 387.590 kb on + strand, within DDA3937_RS01745 at 387.628 kb on + strand, within DDA3937_RS01745 at 387.629 kb on - strand, within DDA3937_RS01745 at 387.629 kb on - strand, within DDA3937_RS01745 at 387.731 kb on + strand, within DDA3937_RS01745 at 387.731 kb on + strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.732 kb on - strand, within DDA3937_RS01745 at 387.741 kb on + strand, within DDA3937_RS01745 at 387.742 kb on - strand, within DDA3937_RS01745 at 387.754 kb on + strand, within DDA3937_RS01745 at 387.847 kb on + strand at 387.847 kb on + strand at 387.847 kb on + strand at 387.847 kb on + strand at 387.902 kb on + strand, within DDA3937_RS01750 at 387.950 kb on - strand, within DDA3937_RS01750 at 387.950 kb on - strand at 387.950 kb on - strand, within DDA3937_RS01750 at 387.961 kb on - strand, within DDA3937_RS01750 at 387.970 kb on + strand, within DDA3937_RS01750 at 387.993 kb on + strand, within DDA3937_RS01750 at 387.994 kb on - strand, within DDA3937_RS01750 at 388.001 kb on - strand, within DDA3937_RS01750 at 388.045 kb on + strand, within DDA3937_RS01750 at 388.045 kb on + strand, within DDA3937_RS01750 at 388.046 kb on - strand, within DDA3937_RS01750 at 388.046 kb on - strand, within DDA3937_RS01750 at 388.079 kb on - strand, within DDA3937_RS01750 at 388.079 kb on - strand, within DDA3937_RS01750 at 388.079 kb on - strand, within DDA3937_RS01750 at 388.081 kb on + strand at 388.081 kb on + strand, within DDA3937_RS01750 at 388.081 kb on + strand, within DDA3937_RS01750 at 388.081 kb on + strand, within DDA3937_RS01750 at 388.082 kb on - strand, within DDA3937_RS01750 at 388.131 kb on + strand at 388.132 kb on - strand, within DDA3937_RS01750 at 388.141 kb on + strand, within DDA3937_RS01750 at 388.142 kb on - strand, within DDA3937_RS01750 at 388.142 kb on - strand, within DDA3937_RS01750 at 388.164 kb on - strand, within DDA3937_RS01750 at 388.164 kb on - strand, within DDA3937_RS01750 at 388.164 kb on - strand, within DDA3937_RS01750 at 388.192 kb on - strand, within DDA3937_RS01750 at 388.192 kb on - strand at 388.214 kb on + strand, within DDA3937_RS01750 at 388.215 kb on - strand, within DDA3937_RS01750 at 388.219 kb on + strand at 388.220 kb on - strand at 388.220 kb on - strand at 388.220 kb on - strand at 388.220 kb on - strand at 388.258 kb on + strand at 388.258 kb on + strand at 388.258 kb on + strand at 388.258 kb on + strand at 388.258 kb on + strand at 388.258 kb on + strand at 388.259 kb on - strand at 388.259 kb on - strand at 388.259 kb on - strand at 388.259 kb on - strand at 388.264 kb on + strand at 388.264 kb on + strand at 388.265 kb on - strand at 388.265 kb on - strand at 388.265 kb on - strand at 388.265 kb on - strand at 388.265 kb on - strand at 388.274 kb on - strand at 388.353 kb on - strand at 388.410 kb on + strand at 388.410 kb on + strand at 388.411 kb on - strand at 388.419 kb on + strand at 388.419 kb on + strand at 388.420 kb on - strand at 388.420 kb on - strand at 388.420 kb on - strand at 388.420 kb on - strand at 388.421 kb on + strand at 388.421 kb on + strand at 388.421 kb on + strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.422 kb on - strand at 388.435 kb on - strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.462 kb on + strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.463 kb on - strand at 388.518 kb on - strand at 388.523 kb on + strand at 388.524 kb on - strand at 388.524 kb on - strand at 388.524 kb on - strand at 388.524 kb on - strand at 388.530 kb on + strand at 388.531 kb on - strand at 388.575 kb on + strand, within DDA3937_RS01755 at 388.575 kb on + strand, within DDA3937_RS01755 at 388.575 kb on + strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.576 kb on - strand, within DDA3937_RS01755 at 388.579 kb on + strand, within DDA3937_RS01755 at 388.579 kb on + strand, within DDA3937_RS01755 at 388.588 kb on + strand, within DDA3937_RS01755 at 388.589 kb on - strand, within DDA3937_RS01755 at 388.642 kb on - strand, within DDA3937_RS01755 at 388.671 kb on + strand, within DDA3937_RS01755 at 388.671 kb on + strand, within DDA3937_RS01755 at 388.672 kb on - strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.684 kb on + strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.685 kb on - strand, within DDA3937_RS01755 at 388.705 kb on - strand, within DDA3937_RS01755 at 388.717 kb on - strand, within DDA3937_RS01755
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 386,361 - DDA3937_RS01740 0.69 -0.5 386,387 - DDA3937_RS01740 0.71 -1.9 386,396 + DDA3937_RS01740 0.71 +0.7 386,420 - DDA3937_RS01740 0.73 +0.3 386,482 + DDA3937_RS01740 0.77 -2.8 386,586 - DDA3937_RS01740 0.85 -1.5 386,586 - DDA3937_RS01740 0.85 +2.4 386,592 - DDA3937_RS01740 0.85 -0.7 386,715 - +2.2 386,852 + +1.3 386,853 - -0.7 386,853 - -2.1 386,854 + -2.0 386,854 + +1.0 386,854 + -1.7 386,854 + +0.2 386,855 - +0.2 386,855 - -1.4 386,855 - +0.6 386,855 - +1.2 386,855 - +0.7 386,855 - +1.3 386,855 - +0.5 386,855 - +1.7 386,855 - +1.5 386,855 - +1.5 386,855 - -1.3 386,855 - +0.9 386,890 - +1.4 386,936 + +0.6 386,941 + +1.5 386,942 - +0.2 386,942 - -0.5 386,942 - -1.3 386,945 + -2.0 387,036 + -0.7 387,066 - -0.1 387,119 - +0.1 387,119 - +0.9 387,119 - -2.2 387,202 + -3.3 387,218 - -0.3 387,218 - +4.0 387,230 - -2.0 387,236 - -1.5 387,249 + +2.7 387,249 + +1.7 387,250 - -0.7 387,256 + -0.1 387,275 + DDA3937_RS01745 0.11 -0.3 387,275 + DDA3937_RS01745 0.11 +1.4 387,275 + DDA3937_RS01745 0.11 +0.8 387,276 - DDA3937_RS01745 0.11 -1.7 387,395 + DDA3937_RS01745 0.30 -0.3 387,395 + DDA3937_RS01745 0.30 +1.3 387,396 - DDA3937_RS01745 0.30 -1.7 387,396 - DDA3937_RS01745 0.30 +1.8 387,396 - DDA3937_RS01745 0.30 -3.0 387,396 - DDA3937_RS01745 0.30 +0.1 387,590 + DDA3937_RS01745 0.61 +0.1 387,628 + DDA3937_RS01745 0.67 -1.3 387,629 - DDA3937_RS01745 0.67 -1.3 387,629 - DDA3937_RS01745 0.67 +1.7 387,731 + DDA3937_RS01745 0.83 +0.4 387,731 + DDA3937_RS01745 0.83 +2.8 387,732 - DDA3937_RS01745 0.83 -2.7 387,732 - DDA3937_RS01745 0.83 -1.9 387,732 - DDA3937_RS01745 0.83 +0.8 387,732 - DDA3937_RS01745 0.83 +0.5 387,732 - DDA3937_RS01745 0.83 -0.4 387,732 - DDA3937_RS01745 0.83 -0.9 387,741 + DDA3937_RS01745 0.85 -0.5 387,742 - DDA3937_RS01745 0.85 -0.9 387,754 + DDA3937_RS01745 0.87 -0.9 387,847 + -1.8 387,847 + +3.2 387,847 + +0.5 387,847 + +0.1 387,902 + DDA3937_RS01750 0.15 +1.7 387,950 - DDA3937_RS01750 0.26 +0.2 387,950 - +1.7 387,950 - DDA3937_RS01750 0.26 -3.7 387,961 - DDA3937_RS01750 0.29 +1.5 387,970 + DDA3937_RS01750 0.31 +0.5 387,993 + DDA3937_RS01750 0.37 -0.9 387,994 - DDA3937_RS01750 0.37 +0.7 388,001 - DDA3937_RS01750 0.39 +1.5 388,045 + DDA3937_RS01750 0.49 -0.4 388,045 + DDA3937_RS01750 0.49 +0.7 388,046 - DDA3937_RS01750 0.49 -1.6 388,046 - DDA3937_RS01750 0.49 +1.1 388,079 - DDA3937_RS01750 0.57 -0.7 388,079 - DDA3937_RS01750 0.57 +0.8 388,079 - DDA3937_RS01750 0.57 -0.9 388,081 + +3.7 388,081 + DDA3937_RS01750 0.57 -1.5 388,081 + DDA3937_RS01750 0.57 +2.0 388,081 + DDA3937_RS01750 0.57 +1.8 388,082 - DDA3937_RS01750 0.58 -1.5 388,131 + +2.7 388,132 - DDA3937_RS01750 0.70 -3.3 388,141 + DDA3937_RS01750 0.72 -0.7 388,142 - DDA3937_RS01750 0.72 -1.9 388,142 - DDA3937_RS01750 0.72 -0.5 388,164 - DDA3937_RS01750 0.77 +0.9 388,164 - DDA3937_RS01750 0.77 -0.8 388,164 - DDA3937_RS01750 0.77 -3.2 388,192 - DDA3937_RS01750 0.84 -2.2 388,192 - +0.3 388,214 + DDA3937_RS01750 0.89 +2.1 388,215 - DDA3937_RS01750 0.89 -1.6 388,219 + +2.1 388,220 - -2.0 388,220 - -2.7 388,220 - -3.0 388,220 - -0.7 388,258 + -2.2 388,258 + +1.3 388,258 + -0.7 388,258 + -1.3 388,258 + +2.0 388,258 + +1.4 388,259 - -1.1 388,259 - -1.6 388,259 - -0.8 388,259 - -0.4 388,264 + +0.1 388,264 + +1.4 388,265 - +0.8 388,265 - -2.7 388,265 - -0.6 388,265 - +0.1 388,265 - -2.6 388,274 - -2.9 388,353 - -0.6 388,410 + -1.7 388,410 + +0.5 388,411 - -1.0 388,419 + -0.7 388,419 + +0.7 388,420 - -0.9 388,420 - -2.5 388,420 - +1.9 388,420 - -1.1 388,421 + +0.7 388,421 + +1.0 388,421 + +1.8 388,422 - +0.5 388,422 - -1.7 388,422 - -4.0 388,422 - -1.4 388,422 - -0.5 388,422 - -2.4 388,422 - -1.5 388,422 - -1.3 388,422 - +1.0 388,435 - -1.0 388,462 + -3.2 388,462 + -1.3 388,462 + -0.0 388,462 + -2.7 388,462 + -0.9 388,462 + -2.8 388,462 + -2.7 388,463 - -1.6 388,463 - -0.3 388,463 - -1.1 388,463 - -1.9 388,463 - -0.7 388,463 - -3.7 388,518 - -1.9 388,523 + -0.0 388,524 - -1.8 388,524 - -1.0 388,524 - -1.0 388,524 - -2.9 388,530 + -1.8 388,531 - +0.2 388,575 + DDA3937_RS01755 0.13 -1.9 388,575 + DDA3937_RS01755 0.13 -1.4 388,575 + DDA3937_RS01755 0.13 -3.2 388,576 - DDA3937_RS01755 0.13 +0.1 388,576 - DDA3937_RS01755 0.13 -2.2 388,576 - DDA3937_RS01755 0.13 -1.5 388,576 - +2.2 388,576 - DDA3937_RS01755 0.13 +3.1 388,576 - DDA3937_RS01755 0.13 -1.3 388,576 - DDA3937_RS01755 0.13 -2.0 388,579 + DDA3937_RS01755 0.14 -0.2 388,579 + DDA3937_RS01755 0.14 -3.2 388,588 + DDA3937_RS01755 0.15 +0.1 388,589 - DDA3937_RS01755 0.15 +0.3 388,642 - DDA3937_RS01755 0.21 -2.3 388,671 + DDA3937_RS01755 0.25 -2.5 388,671 + DDA3937_RS01755 0.25 -1.1 388,672 - DDA3937_RS01755 0.25 -1.2 388,684 + DDA3937_RS01755 0.26 -0.2 388,684 + DDA3937_RS01755 0.26 -1.3 388,684 + DDA3937_RS01755 0.26 -2.6 388,684 + DDA3937_RS01755 0.26 -2.3 388,685 - DDA3937_RS01755 0.27 -1.2 388,685 - DDA3937_RS01755 0.27 -1.2 388,685 - DDA3937_RS01755 0.27 -2.0 388,685 - DDA3937_RS01755 0.27 -0.2 388,705 - DDA3937_RS01755 0.29 -0.3 388,717 - DDA3937_RS01755 0.30 +0.4
Or see this region's nucleotide sequence