Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01680 and DDA3937_RS01685 overlap by 4 nucleotides DDA3937_RS01685 and DDA3937_RS01690 are separated by 93 nucleotides DDA3937_RS01690 and DDA3937_RS01695 are separated by 92 nucleotides DDA3937_RS01695 and DDA3937_RS01700 are separated by 10 nucleotides
DDA3937_RS01680: DDA3937_RS01680 - isoprenoid biosynthesis glyoxalase ElbB, at 373,240 to 373,893
_RS01680
DDA3937_RS01685: DDA3937_RS01685 - monofunctional biosynthetic peptidoglycan transglycosylase, at 373,890 to 374,639
_RS01685
DDA3937_RS01690: DDA3937_RS01690 - alginate lyase family protein, at 374,733 to 376,034
_RS01690
DDA3937_RS01695: DDA3937_RS01695 - divisome-associated lipoprotein YraP, at 376,127 to 376,702
_RS01695
DDA3937_RS01700: DDA3937_RS01700 - DnaA initiator-associating protein DiaA, at 376,713 to 377,303
_RS01700
Position (kb) 374
375
376
377 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.814 kb on - strand, within DDA3937_RS01680 at 373.907 kb on - strand at 373.907 kb on - strand at 374.061 kb on - strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.089 kb on - strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.093 kb on - strand, within DDA3937_RS01685 at 374.093 kb on - strand, within DDA3937_RS01685 at 374.321 kb on + strand, within DDA3937_RS01685 at 374.379 kb on - strand, within DDA3937_RS01685 at 374.392 kb on - strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.431 kb on + strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.553 kb on + strand, within DDA3937_RS01685 at 374.553 kb on + strand, within DDA3937_RS01685 at 374.554 kb on - strand, within DDA3937_RS01685 at 374.634 kb on + strand at 374.731 kb on + strand at 374.731 kb on + strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.740 kb on - strand at 374.786 kb on - strand at 374.786 kb on - strand at 374.786 kb on - strand at 374.826 kb on + strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.860 kb on + strand at 374.910 kb on + strand, within DDA3937_RS01690 at 374.910 kb on + strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 374.921 kb on - strand, within DDA3937_RS01690 at 375.009 kb on + strand, within DDA3937_RS01690 at 375.009 kb on + strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.010 kb on - strand, within DDA3937_RS01690 at 375.027 kb on + strand, within DDA3937_RS01690 at 375.027 kb on + strand, within DDA3937_RS01690 at 375.151 kb on + strand, within DDA3937_RS01690 at 375.151 kb on + strand, within DDA3937_RS01690 at 375.152 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.158 kb on - strand, within DDA3937_RS01690 at 375.174 kb on + strand, within DDA3937_RS01690 at 375.174 kb on + strand, within DDA3937_RS01690 at 375.174 kb on + strand, within DDA3937_RS01690 at 375.175 kb on - strand, within DDA3937_RS01690 at 375.175 kb on - strand, within DDA3937_RS01690 at 375.195 kb on + strand, within DDA3937_RS01690 at 375.195 kb on + strand, within DDA3937_RS01690 at 375.233 kb on + strand, within DDA3937_RS01690 at 375.233 kb on + strand, within DDA3937_RS01690 at 375.234 kb on - strand, within DDA3937_RS01690 at 375.237 kb on - strand, within DDA3937_RS01690 at 375.252 kb on - strand, within DDA3937_RS01690 at 375.252 kb on - strand, within DDA3937_RS01690 at 375.260 kb on + strand, within DDA3937_RS01690 at 375.266 kb on - strand, within DDA3937_RS01690 at 375.266 kb on - strand, within DDA3937_RS01690 at 375.266 kb on - strand, within DDA3937_RS01690 at 375.270 kb on + strand, within DDA3937_RS01690 at 375.271 kb on - strand, within DDA3937_RS01690 at 375.364 kb on + strand, within DDA3937_RS01690 at 375.364 kb on + strand, within DDA3937_RS01690 at 375.365 kb on - strand, within DDA3937_RS01690 at 375.365 kb on - strand, within DDA3937_RS01690 at 375.429 kb on + strand, within DDA3937_RS01690 at 375.430 kb on - strand, within DDA3937_RS01690 at 375.430 kb on - strand, within DDA3937_RS01690 at 375.430 kb on - strand, within DDA3937_RS01690 at 375.455 kb on + strand, within DDA3937_RS01690 at 375.485 kb on + strand, within DDA3937_RS01690 at 375.485 kb on + strand, within DDA3937_RS01690 at 375.485 kb on + strand, within DDA3937_RS01690 at 375.486 kb on - strand, within DDA3937_RS01690 at 375.486 kb on - strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.494 kb on + strand, within DDA3937_RS01690 at 375.495 kb on - strand, within DDA3937_RS01690 at 375.495 kb on - strand, within DDA3937_RS01690 at 375.501 kb on + strand, within DDA3937_RS01690 at 375.502 kb on - strand, within DDA3937_RS01690 at 375.532 kb on - strand, within DDA3937_RS01690 at 375.532 kb on - strand, within DDA3937_RS01690 at 375.652 kb on - strand, within DDA3937_RS01690 at 375.678 kb on - strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.680 kb on + strand, within DDA3937_RS01690 at 375.681 kb on - strand, within DDA3937_RS01690 at 375.681 kb on - strand, within DDA3937_RS01690 at 375.681 kb on - strand, within DDA3937_RS01690 at 375.681 kb on - strand, within DDA3937_RS01690 at 375.681 kb on - strand, within DDA3937_RS01690 at 375.681 kb on - strand, within DDA3937_RS01690 at 375.705 kb on + strand, within DDA3937_RS01690 at 375.706 kb on - strand, within DDA3937_RS01690 at 375.706 kb on - strand, within DDA3937_RS01690 at 375.706 kb on - strand, within DDA3937_RS01690 at 375.726 kb on + strand, within DDA3937_RS01690 at 375.726 kb on + strand, within DDA3937_RS01690 at 375.780 kb on + strand, within DDA3937_RS01690 at 375.807 kb on + strand, within DDA3937_RS01690 at 375.808 kb on - strand, within DDA3937_RS01690 at 375.809 kb on + strand, within DDA3937_RS01690 at 375.809 kb on + strand, within DDA3937_RS01690 at 375.809 kb on + strand, within DDA3937_RS01690 at 375.809 kb on + strand, within DDA3937_RS01690 at 375.809 kb on + strand, within DDA3937_RS01690 at 375.810 kb on - strand, within DDA3937_RS01690 at 375.810 kb on - strand, within DDA3937_RS01690 at 375.848 kb on - strand, within DDA3937_RS01690 at 376.019 kb on + strand at 376.020 kb on - strand at 376.025 kb on + strand at 376.036 kb on + strand at 376.128 kb on + strand at 376.129 kb on - strand at 376.129 kb on - strand at 376.137 kb on + strand at 376.137 kb on + strand at 376.278 kb on - strand, within DDA3937_RS01695 at 376.278 kb on - strand, within DDA3937_RS01695 at 376.360 kb on + strand, within DDA3937_RS01695 at 376.380 kb on + strand, within DDA3937_RS01695 at 376.380 kb on + strand, within DDA3937_RS01695 at 376.380 kb on + strand, within DDA3937_RS01695 at 376.380 kb on + strand, within DDA3937_RS01695 at 376.380 kb on + strand, within DDA3937_RS01695 at 376.380 kb on + strand, within DDA3937_RS01695 at 376.381 kb on - strand, within DDA3937_RS01695 at 376.381 kb on - strand, within DDA3937_RS01695 at 376.511 kb on + strand, within DDA3937_RS01695 at 376.512 kb on - strand, within DDA3937_RS01695 at 376.645 kb on + strand at 376.645 kb on + strand at 376.646 kb on - strand at 376.692 kb on + strand at 376.692 kb on + strand at 376.692 kb on + strand at 376.692 kb on + strand at 376.692 kb on + strand at 376.693 kb on - strand at 376.693 kb on - strand at 376.714 kb on + strand at 376.715 kb on - strand at 376.742 kb on + strand at 376.779 kb on - strand, within DDA3937_RS01700 at 376.779 kb on - strand, within DDA3937_RS01700 at 376.779 kb on - strand, within DDA3937_RS01700 at 376.779 kb on - strand, within DDA3937_RS01700 at 376.779 kb on - strand, within DDA3937_RS01700 at 376.870 kb on + strand, within DDA3937_RS01700 at 376.871 kb on - strand, within DDA3937_RS01700 at 377.008 kb on + strand, within DDA3937_RS01700 at 377.008 kb on + strand, within DDA3937_RS01700 at 377.011 kb on - strand, within DDA3937_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 373,763 + DDA3937_RS01680 0.80 +1.4 373,763 + DDA3937_RS01680 0.80 +0.2 373,813 + DDA3937_RS01680 0.88 -0.3 373,813 + DDA3937_RS01680 0.88 -0.3 373,813 + +0.7 373,813 + DDA3937_RS01680 0.88 -0.7 373,813 + DDA3937_RS01680 0.88 +1.9 373,813 + DDA3937_RS01680 0.88 +0.5 373,813 + DDA3937_RS01680 0.88 +0.7 373,814 - DDA3937_RS01680 0.88 +2.0 373,907 - +2.7 373,907 - -0.9 374,061 - DDA3937_RS01685 0.23 +2.1 374,088 + DDA3937_RS01685 0.26 +1.1 374,088 + DDA3937_RS01685 0.26 +1.7 374,088 + DDA3937_RS01685 0.26 +0.5 374,088 + DDA3937_RS01685 0.26 -0.7 374,088 + DDA3937_RS01685 0.26 +2.3 374,088 + DDA3937_RS01685 0.26 +0.9 374,088 + DDA3937_RS01685 0.26 +0.9 374,089 - DDA3937_RS01685 0.27 -2.1 374,092 + DDA3937_RS01685 0.27 +1.0 374,092 + DDA3937_RS01685 0.27 +1.4 374,092 + DDA3937_RS01685 0.27 -1.3 374,092 + DDA3937_RS01685 0.27 +1.3 374,093 - DDA3937_RS01685 0.27 -0.7 374,093 - DDA3937_RS01685 0.27 +0.5 374,321 + DDA3937_RS01685 0.57 -0.7 374,379 - DDA3937_RS01685 0.65 +0.8 374,392 - DDA3937_RS01685 0.67 -0.8 374,399 + DDA3937_RS01685 0.68 +1.4 374,399 + DDA3937_RS01685 0.68 +2.4 374,399 + DDA3937_RS01685 0.68 +1.2 374,399 + DDA3937_RS01685 0.68 -0.6 374,431 + DDA3937_RS01685 0.72 +2.3 374,432 - DDA3937_RS01685 0.72 +1.5 374,432 - DDA3937_RS01685 0.72 +2.1 374,432 - DDA3937_RS01685 0.72 +0.9 374,553 + DDA3937_RS01685 0.88 -2.2 374,553 + DDA3937_RS01685 0.88 -1.3 374,554 - DDA3937_RS01685 0.89 -1.7 374,634 + -0.8 374,731 + +1.1 374,731 + -2.4 374,732 - -1.5 374,732 - -1.7 374,732 - -0.8 374,732 - -0.4 374,732 - +2.9 374,732 - -1.5 374,740 - -1.3 374,786 - -2.9 374,786 - -0.7 374,786 - -2.1 374,826 + -3.6 374,827 - -1.2 374,827 - -2.6 374,860 + -3.7 374,910 + DDA3937_RS01690 0.14 +0.7 374,910 + DDA3937_RS01690 0.14 -0.6 374,921 - DDA3937_RS01690 0.14 -1.8 374,921 - DDA3937_RS01690 0.14 +0.7 374,921 - DDA3937_RS01690 0.14 -0.3 374,921 - DDA3937_RS01690 0.14 -2.4 375,009 + DDA3937_RS01690 0.21 -1.2 375,009 + DDA3937_RS01690 0.21 +0.1 375,010 - DDA3937_RS01690 0.21 -2.4 375,010 - DDA3937_RS01690 0.21 -1.7 375,010 - -0.3 375,010 - DDA3937_RS01690 0.21 +1.2 375,010 - DDA3937_RS01690 0.21 -1.0 375,010 - DDA3937_RS01690 0.21 +0.7 375,027 + DDA3937_RS01690 0.23 -2.1 375,027 + DDA3937_RS01690 0.23 +1.4 375,151 + DDA3937_RS01690 0.32 +1.2 375,151 + DDA3937_RS01690 0.32 -2.3 375,152 - DDA3937_RS01690 0.32 -0.3 375,158 - DDA3937_RS01690 0.33 +1.2 375,158 - DDA3937_RS01690 0.33 +1.3 375,158 - DDA3937_RS01690 0.33 -2.8 375,158 - DDA3937_RS01690 0.33 -1.3 375,158 - DDA3937_RS01690 0.33 +0.7 375,174 + DDA3937_RS01690 0.34 +0.3 375,174 + DDA3937_RS01690 0.34 -0.9 375,174 + DDA3937_RS01690 0.34 +1.2 375,175 - DDA3937_RS01690 0.34 +3.6 375,175 - DDA3937_RS01690 0.34 +1.1 375,195 + DDA3937_RS01690 0.35 -2.0 375,195 + DDA3937_RS01690 0.35 -1.5 375,233 + DDA3937_RS01690 0.38 -1.1 375,233 + DDA3937_RS01690 0.38 -0.7 375,234 - DDA3937_RS01690 0.38 +2.7 375,237 - DDA3937_RS01690 0.39 -1.0 375,252 - DDA3937_RS01690 0.40 +0.0 375,252 - DDA3937_RS01690 0.40 +0.1 375,260 + DDA3937_RS01690 0.40 -0.7 375,266 - DDA3937_RS01690 0.41 +0.1 375,266 - DDA3937_RS01690 0.41 -2.5 375,266 - DDA3937_RS01690 0.41 -1.9 375,270 + DDA3937_RS01690 0.41 +2.3 375,271 - DDA3937_RS01690 0.41 +0.1 375,364 + DDA3937_RS01690 0.48 +1.1 375,364 + DDA3937_RS01690 0.48 +1.5 375,365 - DDA3937_RS01690 0.49 -1.7 375,365 - DDA3937_RS01690 0.49 -1.9 375,429 + DDA3937_RS01690 0.53 +1.1 375,430 - DDA3937_RS01690 0.54 -1.5 375,430 - DDA3937_RS01690 0.54 -1.1 375,430 - DDA3937_RS01690 0.54 -3.8 375,455 + DDA3937_RS01690 0.55 -2.7 375,485 + DDA3937_RS01690 0.58 +1.1 375,485 + DDA3937_RS01690 0.58 +0.3 375,485 + DDA3937_RS01690 0.58 +0.8 375,486 - DDA3937_RS01690 0.58 -1.8 375,486 - DDA3937_RS01690 0.58 -3.9 375,494 + DDA3937_RS01690 0.58 -1.2 375,494 + DDA3937_RS01690 0.58 -1.1 375,494 + DDA3937_RS01690 0.58 +0.8 375,494 + DDA3937_RS01690 0.58 -0.9 375,494 + DDA3937_RS01690 0.58 -2.7 375,494 + DDA3937_RS01690 0.58 -1.6 375,494 + DDA3937_RS01690 0.58 +0.8 375,495 - DDA3937_RS01690 0.59 -1.8 375,495 - DDA3937_RS01690 0.59 +1.5 375,501 + DDA3937_RS01690 0.59 -0.2 375,502 - DDA3937_RS01690 0.59 -1.5 375,532 - DDA3937_RS01690 0.61 -0.1 375,532 - DDA3937_RS01690 0.61 +0.7 375,652 - DDA3937_RS01690 0.71 -0.7 375,678 - DDA3937_RS01690 0.73 +0.1 375,680 + DDA3937_RS01690 0.73 -1.9 375,680 + DDA3937_RS01690 0.73 -1.3 375,680 + DDA3937_RS01690 0.73 -1.5 375,680 + DDA3937_RS01690 0.73 +0.1 375,680 + DDA3937_RS01690 0.73 -0.3 375,680 + DDA3937_RS01690 0.73 +1.7 375,680 + DDA3937_RS01690 0.73 -1.3 375,680 + DDA3937_RS01690 0.73 +0.9 375,681 - DDA3937_RS01690 0.73 +0.6 375,681 - DDA3937_RS01690 0.73 -0.1 375,681 - DDA3937_RS01690 0.73 +0.5 375,681 - DDA3937_RS01690 0.73 -2.5 375,681 - DDA3937_RS01690 0.73 -2.3 375,681 - DDA3937_RS01690 0.73 -1.5 375,705 + DDA3937_RS01690 0.75 +1.3 375,706 - DDA3937_RS01690 0.75 +0.3 375,706 - DDA3937_RS01690 0.75 +0.4 375,706 - DDA3937_RS01690 0.75 -1.3 375,726 + DDA3937_RS01690 0.76 -2.9 375,726 + DDA3937_RS01690 0.76 -1.4 375,780 + DDA3937_RS01690 0.80 -4.1 375,807 + DDA3937_RS01690 0.82 -0.9 375,808 - DDA3937_RS01690 0.83 -0.3 375,809 + DDA3937_RS01690 0.83 -0.5 375,809 + DDA3937_RS01690 0.83 -2.2 375,809 + DDA3937_RS01690 0.83 +0.4 375,809 + DDA3937_RS01690 0.83 -0.1 375,809 + DDA3937_RS01690 0.83 -1.1 375,810 - DDA3937_RS01690 0.83 -2.3 375,810 - DDA3937_RS01690 0.83 +0.9 375,848 - DDA3937_RS01690 0.86 +0.7 376,019 + +0.2 376,020 - -0.3 376,025 + -1.2 376,036 + +1.7 376,128 + -0.0 376,129 - +0.7 376,129 - -0.6 376,137 + -0.0 376,137 + +1.1 376,278 - DDA3937_RS01695 0.26 -1.0 376,278 - DDA3937_RS01695 0.26 -1.1 376,360 + DDA3937_RS01695 0.40 +3.8 376,380 + DDA3937_RS01695 0.44 -1.3 376,380 + DDA3937_RS01695 0.44 +0.9 376,380 + DDA3937_RS01695 0.44 +1.4 376,380 + DDA3937_RS01695 0.44 -0.9 376,380 + DDA3937_RS01695 0.44 -0.7 376,380 + DDA3937_RS01695 0.44 -1.7 376,381 - DDA3937_RS01695 0.44 -0.7 376,381 - DDA3937_RS01695 0.44 +4.2 376,511 + DDA3937_RS01695 0.67 -0.1 376,512 - DDA3937_RS01695 0.67 -1.1 376,645 + +1.9 376,645 + +3.5 376,646 - -1.5 376,692 + +1.3 376,692 + +2.8 376,692 + +0.7 376,692 + +3.8 376,692 + -2.0 376,693 - +0.9 376,693 - +1.7 376,714 + -0.7 376,715 - +0.0 376,742 + -1.3 376,779 - DDA3937_RS01700 0.11 +2.0 376,779 - DDA3937_RS01700 0.11 +1.3 376,779 - DDA3937_RS01700 0.11 +1.7 376,779 - DDA3937_RS01700 0.11 +1.9 376,779 - DDA3937_RS01700 0.11 -0.7 376,870 + DDA3937_RS01700 0.27 +2.0 376,871 - DDA3937_RS01700 0.27 -0.7 377,008 + DDA3937_RS01700 0.50 +2.3 377,008 + DDA3937_RS01700 0.50 +0.7 377,011 - DDA3937_RS01700 0.50 +1.9
Or see this region's nucleotide sequence