Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01265 and DDA3937_RS01270 are separated by 72 nucleotides DDA3937_RS01270 and DDA3937_RS01275 are separated by 296 nucleotides
DDA3937_RS01265: DDA3937_RS01265 - amino acid ABC transporter permease, at 286,118 to 287,296
_RS01265
DDA3937_RS01270: DDA3937_RS01270 - amino acid ABC transporter substrate-binding protein, at 287,369 to 288,394
_RS01270
DDA3937_RS01275: DDA3937_RS01275 - CTP synthase, at 288,691 to 289,386
_RS01275
Position (kb) 287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.378 kb on + strand, within DDA3937_RS01265 at 286.434 kb on + strand, within DDA3937_RS01265 at 286.475 kb on - strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.486 kb on + strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.487 kb on - strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.488 kb on + strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.489 kb on - strand, within DDA3937_RS01265 at 286.632 kb on - strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.683 kb on + strand, within DDA3937_RS01265 at 286.690 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand, within DDA3937_RS01265 at 286.785 kb on + strand at 286.785 kb on + strand, within DDA3937_RS01265 at 286.786 kb on - strand, within DDA3937_RS01265 at 286.813 kb on + strand, within DDA3937_RS01265 at 286.814 kb on - strand, within DDA3937_RS01265 at 286.878 kb on + strand, within DDA3937_RS01265 at 286.900 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.920 kb on + strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.921 kb on - strand, within DDA3937_RS01265 at 286.978 kb on + strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 286.979 kb on - strand, within DDA3937_RS01265 at 287.005 kb on + strand, within DDA3937_RS01265 at 287.006 kb on - strand at 287.061 kb on + strand, within DDA3937_RS01265 at 287.062 kb on - strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.101 kb on + strand, within DDA3937_RS01265 at 287.102 kb on - strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.143 kb on + strand, within DDA3937_RS01265 at 287.144 kb on - strand, within DDA3937_RS01265 at 287.188 kb on - strand at 287.188 kb on - strand at 287.230 kb on - strand at 287.230 kb on - strand at 287.255 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.265 kb on - strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.359 kb on - strand at 287.388 kb on + strand at 287.389 kb on - strand at 287.482 kb on - strand, within DDA3937_RS01270 at 287.482 kb on - strand, within DDA3937_RS01270 at 287.489 kb on + strand, within DDA3937_RS01270 at 287.490 kb on - strand, within DDA3937_RS01270 at 287.508 kb on + strand, within DDA3937_RS01270 at 287.509 kb on - strand at 287.744 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.776 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.787 kb on + strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.788 kb on - strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.880 kb on + strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.881 kb on - strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 287.904 kb on + strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.022 kb on - strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.024 kb on + strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.025 kb on - strand, within DDA3937_RS01270 at 288.082 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.225 kb on + strand, within DDA3937_RS01270 at 288.226 kb on - strand, within DDA3937_RS01270 at 288.247 kb on - strand, within DDA3937_RS01270 at 288.380 kb on - strand at 288.380 kb on - strand at 288.394 kb on + strand at 288.394 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.403 kb on + strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.404 kb on - strand at 288.411 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.416 kb on + strand at 288.417 kb on - strand at 288.417 kb on - strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.419 kb on + strand at 288.420 kb on - strand at 288.420 kb on - strand at 288.420 kb on - strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.422 kb on + strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.423 kb on - strand at 288.533 kb on + strand at 288.534 kb on - strand at 288.537 kb on + strand at 288.538 kb on - strand at 288.538 kb on - strand at 288.545 kb on + strand at 288.546 kb on - strand at 288.559 kb on + strand at 288.596 kb on + strand at 288.596 kb on + strand at 288.597 kb on - strand at 288.598 kb on + strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.599 kb on - strand at 288.619 kb on + strand at 288.620 kb on - strand at 288.697 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.739 kb on + strand at 288.740 kb on - strand at 288.749 kb on - strand at 288.820 kb on - strand, within DDA3937_RS01275 at 288.850 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 288.972 kb on + strand, within DDA3937_RS01275 at 289.047 kb on + strand, within DDA3937_RS01275 at 289.048 kb on - strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.050 kb on + strand, within DDA3937_RS01275 at 289.083 kb on - strand, within DDA3937_RS01275 at 289.097 kb on + strand, within DDA3937_RS01275 at 289.167 kb on + strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.168 kb on - strand, within DDA3937_RS01275 at 289.244 kb on - strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.246 kb on + strand, within DDA3937_RS01275 at 289.247 kb on - strand, within DDA3937_RS01275 at 289.349 kb on + strand at 289.349 kb on + strand at 289.350 kb on - strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.357 kb on + strand at 289.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 286,378 + DDA3937_RS01265 0.22 -1.6 286,378 + DDA3937_RS01265 0.22 -1.3 286,378 + DDA3937_RS01265 0.22 -1.3 286,434 + DDA3937_RS01265 0.27 +0.9 286,475 - DDA3937_RS01265 0.30 -1.2 286,486 + DDA3937_RS01265 0.31 -1.4 286,486 + DDA3937_RS01265 0.31 -0.9 286,486 + DDA3937_RS01265 0.31 -0.9 286,486 + DDA3937_RS01265 0.31 -0.4 286,486 + DDA3937_RS01265 0.31 -2.0 286,486 + DDA3937_RS01265 0.31 -0.1 286,486 + DDA3937_RS01265 0.31 +0.2 286,486 + DDA3937_RS01265 0.31 -2.7 286,486 + DDA3937_RS01265 0.31 -0.9 286,487 - DDA3937_RS01265 0.31 -2.4 286,487 - DDA3937_RS01265 0.31 +0.0 286,487 - DDA3937_RS01265 0.31 +0.8 286,487 - DDA3937_RS01265 0.31 +0.6 286,487 - +0.1 286,487 - DDA3937_RS01265 0.31 -2.0 286,487 - DDA3937_RS01265 0.31 -2.6 286,487 - DDA3937_RS01265 0.31 -0.5 286,487 - DDA3937_RS01265 0.31 +1.1 286,487 - DDA3937_RS01265 0.31 -1.8 286,487 - DDA3937_RS01265 0.31 +0.1 286,488 + DDA3937_RS01265 0.31 +0.5 286,488 + DDA3937_RS01265 0.31 +2.4 286,488 + DDA3937_RS01265 0.31 -0.9 286,489 - DDA3937_RS01265 0.31 -1.7 286,489 - DDA3937_RS01265 0.31 +1.7 286,489 - DDA3937_RS01265 0.31 +0.3 286,632 - DDA3937_RS01265 0.44 -1.5 286,683 + DDA3937_RS01265 0.48 +0.4 286,683 + DDA3937_RS01265 0.48 -1.8 286,690 + DDA3937_RS01265 0.49 +2.2 286,785 + DDA3937_RS01265 0.57 +0.1 286,785 + DDA3937_RS01265 0.57 -1.2 286,785 + -0.7 286,785 + DDA3937_RS01265 0.57 -0.3 286,786 - DDA3937_RS01265 0.57 -2.2 286,813 + DDA3937_RS01265 0.59 -0.7 286,814 - DDA3937_RS01265 0.59 -2.7 286,878 + DDA3937_RS01265 0.64 -0.2 286,900 + DDA3937_RS01265 0.66 -2.4 286,920 + DDA3937_RS01265 0.68 -0.3 286,920 + DDA3937_RS01265 0.68 -1.5 286,920 + DDA3937_RS01265 0.68 +0.7 286,920 + DDA3937_RS01265 0.68 -0.7 286,920 + DDA3937_RS01265 0.68 -1.2 286,920 + DDA3937_RS01265 0.68 +0.1 286,920 + DDA3937_RS01265 0.68 +0.8 286,921 - DDA3937_RS01265 0.68 -1.7 286,921 - DDA3937_RS01265 0.68 -0.0 286,921 - DDA3937_RS01265 0.68 -3.0 286,921 - -1.2 286,921 - DDA3937_RS01265 0.68 -0.9 286,921 - DDA3937_RS01265 0.68 -1.4 286,921 - DDA3937_RS01265 0.68 +1.0 286,921 - DDA3937_RS01265 0.68 +0.2 286,921 - DDA3937_RS01265 0.68 +0.1 286,978 + DDA3937_RS01265 0.73 -2.4 286,979 - DDA3937_RS01265 0.73 -0.5 286,979 - DDA3937_RS01265 0.73 +1.0 286,979 - DDA3937_RS01265 0.73 -2.0 287,005 + DDA3937_RS01265 0.75 -1.0 287,006 - +0.7 287,061 + DDA3937_RS01265 0.80 +0.4 287,062 - DDA3937_RS01265 0.80 -1.3 287,101 + DDA3937_RS01265 0.83 -1.7 287,101 + DDA3937_RS01265 0.83 +0.8 287,102 - DDA3937_RS01265 0.83 -3.2 287,143 + DDA3937_RS01265 0.87 +2.7 287,143 + DDA3937_RS01265 0.87 -1.2 287,143 + DDA3937_RS01265 0.87 -2.5 287,144 - DDA3937_RS01265 0.87 +0.4 287,188 - -0.5 287,188 - -1.8 287,230 - -0.2 287,230 - -2.1 287,255 - -1.2 287,265 - +1.0 287,265 - -1.7 287,265 - -0.9 287,317 + +0.2 287,317 + -1.7 287,317 + -2.3 287,317 + +2.0 287,359 - -1.1 287,388 + -2.4 287,389 - +2.7 287,482 - DDA3937_RS01270 0.11 -1.9 287,482 - DDA3937_RS01270 0.11 -0.1 287,489 + DDA3937_RS01270 0.12 -1.7 287,490 - DDA3937_RS01270 0.12 +1.1 287,508 + DDA3937_RS01270 0.14 +1.4 287,509 - +1.1 287,744 + DDA3937_RS01270 0.37 -0.3 287,776 + DDA3937_RS01270 0.40 -1.7 287,776 + DDA3937_RS01270 0.40 +1.9 287,787 + DDA3937_RS01270 0.41 -0.1 287,787 + DDA3937_RS01270 0.41 -0.8 287,788 - DDA3937_RS01270 0.41 -3.5 287,788 - DDA3937_RS01270 0.41 +1.0 287,788 - DDA3937_RS01270 0.41 +3.9 287,880 + DDA3937_RS01270 0.50 -1.1 287,880 + DDA3937_RS01270 0.50 -2.7 287,881 - DDA3937_RS01270 0.50 -2.4 287,881 - DDA3937_RS01270 0.50 +0.1 287,881 - DDA3937_RS01270 0.50 -1.9 287,881 - DDA3937_RS01270 0.50 +0.1 287,904 + DDA3937_RS01270 0.52 -0.9 287,904 + DDA3937_RS01270 0.52 -0.2 288,022 - DDA3937_RS01270 0.64 -0.7 288,022 - DDA3937_RS01270 0.64 -0.1 288,022 - DDA3937_RS01270 0.64 +0.8 288,022 - DDA3937_RS01270 0.64 -0.0 288,022 - DDA3937_RS01270 0.64 -0.6 288,024 + DDA3937_RS01270 0.64 +0.1 288,024 + DDA3937_RS01270 0.64 -0.5 288,024 + DDA3937_RS01270 0.64 -3.1 288,025 - DDA3937_RS01270 0.64 +0.3 288,025 - DDA3937_RS01270 0.64 +2.0 288,025 - DDA3937_RS01270 0.64 +1.7 288,082 + DDA3937_RS01270 0.69 -0.2 288,225 + DDA3937_RS01270 0.83 +1.0 288,225 + DDA3937_RS01270 0.83 +0.8 288,226 - DDA3937_RS01270 0.84 -1.7 288,247 - DDA3937_RS01270 0.86 +0.2 288,380 - +2.0 288,380 - -0.1 288,394 + +0.4 288,394 + -1.7 288,403 + -0.4 288,403 + -0.3 288,403 + -0.1 288,403 + +0.0 288,403 + -0.1 288,403 + +1.5 288,403 + -0.1 288,404 - +3.2 288,404 - +0.9 288,404 - +1.0 288,404 - +0.5 288,404 - -1.7 288,404 - +2.8 288,404 - -1.3 288,411 + -2.7 288,416 + -0.8 288,416 + -0.9 288,416 + -0.2 288,416 + -1.8 288,416 + -2.4 288,417 - -0.1 288,417 - -2.6 288,419 + -0.2 288,419 + -1.0 288,419 + -1.7 288,419 + +0.8 288,419 + +0.8 288,420 - -1.1 288,420 - -1.9 288,420 - -1.1 288,422 + +0.5 288,422 + -1.5 288,422 + +0.2 288,422 + +0.0 288,422 + -2.9 288,422 + -0.9 288,422 + +1.9 288,422 + +0.8 288,422 + -1.8 288,423 - -0.6 288,423 - +1.5 288,423 - +1.1 288,423 - +1.3 288,423 - -2.1 288,423 - -1.9 288,423 - +1.0 288,423 - -0.1 288,533 + +0.1 288,534 - -0.1 288,537 + -0.1 288,538 - +2.0 288,538 - +1.7 288,545 + -1.5 288,546 - -1.3 288,559 + +1.2 288,596 + -1.3 288,596 + -1.3 288,597 - +0.7 288,598 + -0.1 288,599 - -0.1 288,599 - -2.3 288,599 - -1.5 288,599 - -0.9 288,619 + -0.6 288,620 - -2.1 288,697 + +2.1 288,739 + +2.7 288,739 + -3.7 288,739 + -0.3 288,740 - -1.9 288,749 - -0.2 288,820 - DDA3937_RS01275 0.19 -3.0 288,850 + DDA3937_RS01275 0.23 +1.2 288,972 + DDA3937_RS01275 0.40 +1.9 288,972 + DDA3937_RS01275 0.40 -0.5 289,047 + DDA3937_RS01275 0.51 -1.1 289,048 - DDA3937_RS01275 0.51 -2.6 289,050 + DDA3937_RS01275 0.52 +0.1 289,050 + DDA3937_RS01275 0.52 -1.5 289,083 - DDA3937_RS01275 0.56 -1.3 289,097 + DDA3937_RS01275 0.58 +1.7 289,167 + DDA3937_RS01275 0.68 -3.2 289,168 - DDA3937_RS01275 0.69 +1.2 289,168 - DDA3937_RS01275 0.69 -0.9 289,244 - DDA3937_RS01275 0.79 +0.9 289,246 + DDA3937_RS01275 0.80 -0.1 289,246 + DDA3937_RS01275 0.80 -0.7 289,246 + DDA3937_RS01275 0.80 +1.6 289,246 + DDA3937_RS01275 0.80 -2.2 289,246 + DDA3937_RS01275 0.80 +1.0 289,247 - DDA3937_RS01275 0.80 +0.7 289,349 + -2.5 289,349 + +0.8 289,350 - +0.3 289,357 + +0.1 289,357 + +0.5 289,357 + +0.0 289,357 + -0.3 289,358 - +1.4
Or see this region's nucleotide sequence