Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01130 and DDA3937_RS01135 are separated by 26 nucleotides DDA3937_RS01135 and DDA3937_RS01140 are separated by 165 nucleotides DDA3937_RS01140 and DDA3937_RS01145 overlap by 4 nucleotides
DDA3937_RS01130: DDA3937_RS01130 - cytochrome b/b6 domain-containing protein, at 260,457 to 261,059
_RS01130
DDA3937_RS01135: DDA3937_RS01135 - hypothetical protein, at 261,086 to 261,709
_RS01135
DDA3937_RS01140: DDA3937_RS01140 - heavy metal response regulator transcription factor, at 261,875 to 262,546
_RS01140
DDA3937_RS01145: DDA3937_RS01145 - heavy metal sensor histidine kinase, at 262,543 to 264,006
_RS01145
Position (kb) 261
262
263 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 260.883 kb on + strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.954 kb on + strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.975 kb on + strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 261.087 kb on + strand at 261.217 kb on + strand, within DDA3937_RS01135 at 261.217 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.314 kb on + strand, within DDA3937_RS01135 at 261.457 kb on + strand, within DDA3937_RS01135 at 261.573 kb on - strand, within DDA3937_RS01135 at 261.573 kb on - strand, within DDA3937_RS01135 at 261.587 kb on + strand, within DDA3937_RS01135 at 261.588 kb on - strand, within DDA3937_RS01135 at 261.588 kb on - strand, within DDA3937_RS01135 at 261.663 kb on - strand at 261.691 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.755 kb on + strand at 261.755 kb on + strand at 261.756 kb on - strand at 261.756 kb on - strand at 261.756 kb on - strand at 261.788 kb on + strand at 261.788 kb on + strand at 261.788 kb on + strand at 261.788 kb on + strand at 261.789 kb on - strand at 261.789 kb on - strand at 261.789 kb on - strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.820 kb on - strand at 261.880 kb on + strand at 261.880 kb on + strand at 261.881 kb on - strand at 261.881 kb on - strand at 261.917 kb on + strand at 261.918 kb on - strand at 262.016 kb on - strand, within DDA3937_RS01140 at 262.016 kb on - strand, within DDA3937_RS01140 at 262.060 kb on + strand, within DDA3937_RS01140 at 262.061 kb on - strand, within DDA3937_RS01140 at 262.163 kb on + strand, within DDA3937_RS01140 at 262.251 kb on - strand, within DDA3937_RS01140 at 262.251 kb on - strand, within DDA3937_RS01140 at 262.516 kb on + strand at 262.523 kb on + strand at 262.523 kb on + strand at 262.524 kb on - strand at 262.586 kb on + strand at 262.586 kb on + strand at 262.587 kb on - strand at 262.587 kb on - strand at 262.646 kb on - strand at 262.675 kb on + strand at 262.691 kb on + strand, within DDA3937_RS01145 at 262.691 kb on + strand, within DDA3937_RS01145 at 262.691 kb on + strand, within DDA3937_RS01145 at 262.691 kb on + strand, within DDA3937_RS01145 at 262.691 kb on + strand, within DDA3937_RS01145 at 262.691 kb on + strand at 262.691 kb on + strand, within DDA3937_RS01145 at 262.691 kb on + strand, within DDA3937_RS01145 at 262.691 kb on + strand, within DDA3937_RS01145 at 262.692 kb on - strand, within DDA3937_RS01145 at 262.692 kb on - strand, within DDA3937_RS01145 at 262.692 kb on - strand, within DDA3937_RS01145 at 262.692 kb on - strand, within DDA3937_RS01145 at 262.692 kb on - strand, within DDA3937_RS01145 at 262.692 kb on - strand, within DDA3937_RS01145 at 262.714 kb on + strand, within DDA3937_RS01145 at 262.714 kb on + strand, within DDA3937_RS01145 at 262.715 kb on - strand, within DDA3937_RS01145 at 262.715 kb on - strand, within DDA3937_RS01145 at 262.717 kb on + strand, within DDA3937_RS01145 at 262.718 kb on - strand, within DDA3937_RS01145 at 262.785 kb on + strand, within DDA3937_RS01145 at 262.785 kb on + strand, within DDA3937_RS01145 at 262.786 kb on - strand, within DDA3937_RS01145 at 262.786 kb on - strand, within DDA3937_RS01145 at 262.864 kb on - strand, within DDA3937_RS01145 at 262.864 kb on - strand, within DDA3937_RS01145 at 262.899 kb on + strand, within DDA3937_RS01145 at 262.899 kb on + strand, within DDA3937_RS01145 at 262.922 kb on + strand, within DDA3937_RS01145 at 262.949 kb on + strand, within DDA3937_RS01145 at 263.053 kb on + strand, within DDA3937_RS01145 at 263.054 kb on - strand, within DDA3937_RS01145 at 263.054 kb on - strand, within DDA3937_RS01145 at 263.113 kb on + strand, within DDA3937_RS01145 at 263.136 kb on - strand, within DDA3937_RS01145 at 263.185 kb on - strand, within DDA3937_RS01145 at 263.371 kb on + strand, within DDA3937_RS01145 at 263.371 kb on + strand, within DDA3937_RS01145 at 263.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 260,883 + DDA3937_RS01130 0.71 +0.2 260,916 - DDA3937_RS01130 0.76 +0.0 260,916 - DDA3937_RS01130 0.76 -2.5 260,916 - DDA3937_RS01130 0.76 +0.6 260,916 - DDA3937_RS01130 0.76 +2.4 260,954 + DDA3937_RS01130 0.82 -2.3 260,957 - DDA3937_RS01130 0.83 +0.6 260,957 - DDA3937_RS01130 0.83 +0.2 260,957 - DDA3937_RS01130 0.83 +1.4 260,957 - DDA3937_RS01130 0.83 +0.1 260,975 + DDA3937_RS01130 0.86 -1.3 260,976 - DDA3937_RS01130 0.86 +0.7 260,976 - DDA3937_RS01130 0.86 -2.5 260,976 - DDA3937_RS01130 0.86 +1.1 260,998 - DDA3937_RS01130 0.90 +1.7 260,998 - DDA3937_RS01130 0.90 +1.3 260,998 - DDA3937_RS01130 0.90 -1.1 261,087 + -1.1 261,217 + DDA3937_RS01135 0.21 -0.0 261,217 + DDA3937_RS01135 0.21 -1.7 261,270 + DDA3937_RS01135 0.29 -0.2 261,270 + DDA3937_RS01135 0.29 -1.6 261,270 + DDA3937_RS01135 0.29 -0.3 261,270 + DDA3937_RS01135 0.29 +0.8 261,271 - DDA3937_RS01135 0.30 +0.8 261,271 - DDA3937_RS01135 0.30 +0.8 261,271 - DDA3937_RS01135 0.30 +0.7 261,271 - DDA3937_RS01135 0.30 +0.0 261,271 - DDA3937_RS01135 0.30 -0.6 261,314 + DDA3937_RS01135 0.37 -1.4 261,457 + DDA3937_RS01135 0.59 -0.6 261,573 - DDA3937_RS01135 0.78 +0.5 261,573 - DDA3937_RS01135 0.78 -3.0 261,587 + DDA3937_RS01135 0.80 +0.3 261,588 - DDA3937_RS01135 0.80 +0.6 261,588 - DDA3937_RS01135 0.80 -1.1 261,663 - -1.2 261,691 + +0.1 261,704 + -1.8 261,704 + -3.1 261,704 + -1.5 261,704 + -2.9 261,704 + -1.4 261,705 - +0.9 261,705 - +1.9 261,705 - +0.6 261,705 - -3.8 261,705 - -3.2 261,705 - -2.5 261,755 + +1.8 261,755 + +0.7 261,756 - +0.1 261,756 - +0.5 261,756 - +1.4 261,788 + -0.6 261,788 + -1.0 261,788 + +0.4 261,788 + +1.2 261,789 - +0.1 261,789 - +0.6 261,789 - -0.6 261,812 + +2.8 261,812 + -0.6 261,812 + -0.6 261,812 + +0.3 261,812 + +1.9 261,812 + -1.5 261,812 + -0.3 261,813 - -1.1 261,813 - +0.3 261,813 - +1.2 261,813 - -2.0 261,813 - +2.2 261,813 - +1.4 261,813 - -1.8 261,813 - -0.1 261,813 - -1.1 261,813 - +1.8 261,813 - +1.8 261,819 + -2.4 261,819 + +2.5 261,819 + +0.2 261,819 + -1.9 261,819 + +0.5 261,820 - -1.1 261,880 + -0.6 261,880 + -1.0 261,881 - -1.9 261,881 - -1.2 261,917 + +0.5 261,918 - +1.0 262,016 - DDA3937_RS01140 0.21 +0.3 262,016 - DDA3937_RS01140 0.21 -2.3 262,060 + DDA3937_RS01140 0.28 -1.6 262,061 - DDA3937_RS01140 0.28 -1.6 262,163 + DDA3937_RS01140 0.43 -1.0 262,251 - DDA3937_RS01140 0.56 -2.5 262,251 - DDA3937_RS01140 0.56 -1.8 262,516 + -1.1 262,523 + +1.0 262,523 + -1.6 262,524 - -2.1 262,586 + -0.3 262,586 + +1.0 262,587 - -2.3 262,587 - -0.7 262,646 - -1.8 262,675 + -1.8 262,691 + DDA3937_RS01145 0.10 +1.0 262,691 + DDA3937_RS01145 0.10 +0.9 262,691 + DDA3937_RS01145 0.10 -0.2 262,691 + DDA3937_RS01145 0.10 -1.1 262,691 + DDA3937_RS01145 0.10 +2.6 262,691 + +0.1 262,691 + DDA3937_RS01145 0.10 -0.3 262,691 + DDA3937_RS01145 0.10 -3.3 262,691 + DDA3937_RS01145 0.10 -0.2 262,692 - DDA3937_RS01145 0.10 -0.7 262,692 - DDA3937_RS01145 0.10 -0.6 262,692 - DDA3937_RS01145 0.10 +1.5 262,692 - DDA3937_RS01145 0.10 -1.8 262,692 - DDA3937_RS01145 0.10 -1.6 262,692 - DDA3937_RS01145 0.10 -1.6 262,714 + DDA3937_RS01145 0.12 -1.3 262,714 + DDA3937_RS01145 0.12 -1.1 262,715 - DDA3937_RS01145 0.12 -2.4 262,715 - DDA3937_RS01145 0.12 +1.9 262,717 + DDA3937_RS01145 0.12 +0.4 262,718 - DDA3937_RS01145 0.12 -2.1 262,785 + DDA3937_RS01145 0.17 -1.8 262,785 + DDA3937_RS01145 0.17 -1.1 262,786 - DDA3937_RS01145 0.17 -1.7 262,786 - DDA3937_RS01145 0.17 -0.9 262,864 - DDA3937_RS01145 0.22 +1.8 262,864 - DDA3937_RS01145 0.22 +1.3 262,899 + DDA3937_RS01145 0.24 -1.9 262,899 + DDA3937_RS01145 0.24 -0.9 262,922 + DDA3937_RS01145 0.26 +0.1 262,949 + DDA3937_RS01145 0.28 -1.3 263,053 + DDA3937_RS01145 0.35 -1.8 263,054 - DDA3937_RS01145 0.35 +2.0 263,054 - DDA3937_RS01145 0.35 +1.1 263,113 + DDA3937_RS01145 0.39 -2.4 263,136 - DDA3937_RS01145 0.41 -2.0 263,185 - DDA3937_RS01145 0.44 +0.2 263,371 + DDA3937_RS01145 0.57 +1.7 263,371 + DDA3937_RS01145 0.57 -2.3 263,395 + +1.7
Or see this region's nucleotide sequence