Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00955 and DDA3937_RS00960 are separated by 342 nucleotides DDA3937_RS00960 and DDA3937_RS00965 are separated by 179 nucleotides
DDA3937_RS00955: DDA3937_RS00955 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 218,864 to 221,299
_RS00955
DDA3937_RS00960: DDA3937_RS00960 - methylenetetrahydrofolate reductase, at 221,642 to 222,538
_RS00960
DDA3937_RS00965: DDA3937_RS00965 - glutathione peroxidase, at 222,718 to 223,449
_RS00965
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 220.661 kb on + strand, within DDA3937_RS00955 at 220.662 kb on - strand, within DDA3937_RS00955 at 220.662 kb on - strand at 220.697 kb on + strand, within DDA3937_RS00955 at 220.697 kb on + strand, within DDA3937_RS00955 at 220.697 kb on + strand, within DDA3937_RS00955 at 220.698 kb on - strand, within DDA3937_RS00955 at 220.698 kb on - strand, within DDA3937_RS00955 at 220.698 kb on - strand, within DDA3937_RS00955 at 220.698 kb on - strand, within DDA3937_RS00955 at 220.698 kb on - strand, within DDA3937_RS00955 at 220.698 kb on - strand, within DDA3937_RS00955 at 220.750 kb on + strand, within DDA3937_RS00955 at 220.750 kb on + strand, within DDA3937_RS00955 at 220.808 kb on - strand, within DDA3937_RS00955 at 220.900 kb on + strand, within DDA3937_RS00955 at 221.079 kb on - strand at 221.115 kb on + strand at 221.170 kb on + strand at 221.247 kb on + strand at 221.414 kb on - strand at 221.414 kb on - strand at 221.424 kb on + strand at 221.424 kb on + strand at 221.424 kb on + strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.432 kb on - strand at 221.444 kb on + strand at 221.444 kb on + strand at 221.444 kb on + strand at 221.445 kb on - strand at 221.445 kb on - strand at 221.445 kb on - strand at 221.449 kb on - strand at 221.449 kb on - strand at 221.526 kb on + strand at 221.526 kb on + strand at 221.526 kb on + strand at 221.611 kb on - strand at 221.611 kb on - strand at 221.619 kb on + strand at 221.620 kb on - strand at 221.635 kb on + strand at 221.635 kb on + strand at 221.636 kb on - strand at 221.636 kb on - strand at 221.641 kb on + strand at 221.642 kb on - strand at 221.642 kb on - strand at 221.642 kb on - strand at 221.697 kb on + strand at 221.697 kb on + strand at 221.697 kb on + strand at 221.711 kb on - strand at 221.800 kb on + strand, within DDA3937_RS00960 at 221.800 kb on + strand, within DDA3937_RS00960 at 221.801 kb on - strand, within DDA3937_RS00960 at 221.819 kb on + strand, within DDA3937_RS00960 at 221.820 kb on - strand, within DDA3937_RS00960 at 221.820 kb on - strand, within DDA3937_RS00960 at 221.881 kb on + strand, within DDA3937_RS00960 at 221.881 kb on + strand, within DDA3937_RS00960 at 222.019 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.032 kb on + strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.033 kb on - strand, within DDA3937_RS00960 at 222.080 kb on - strand, within DDA3937_RS00960 at 222.080 kb on - strand, within DDA3937_RS00960 at 222.080 kb on - strand, within DDA3937_RS00960 at 222.096 kb on - strand, within DDA3937_RS00960 at 222.142 kb on + strand, within DDA3937_RS00960 at 222.143 kb on - strand, within DDA3937_RS00960 at 222.143 kb on - strand, within DDA3937_RS00960 at 222.418 kb on + strand, within DDA3937_RS00960 at 222.419 kb on - strand, within DDA3937_RS00960 at 222.419 kb on - strand, within DDA3937_RS00960 at 222.464 kb on + strand at 222.464 kb on + strand at 222.464 kb on + strand at 222.465 kb on - strand at 222.465 kb on - strand at 222.465 kb on - strand at 222.491 kb on + strand at 222.492 kb on - strand at 222.492 kb on - strand at 222.505 kb on + strand at 222.505 kb on + strand at 222.506 kb on - strand at 222.506 kb on - strand at 222.506 kb on - strand at 222.581 kb on + strand at 222.603 kb on + strand at 222.603 kb on + strand at 222.604 kb on - strand at 222.604 kb on - strand at 222.614 kb on + strand at 222.778 kb on + strand at 222.778 kb on + strand at 222.779 kb on - strand at 222.779 kb on - strand at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.795 kb on + strand, within DDA3937_RS00965 at 222.796 kb on - strand, within DDA3937_RS00965 at 222.922 kb on - strand, within DDA3937_RS00965 at 222.948 kb on + strand at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.948 kb on + strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.949 kb on - strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.950 kb on + strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.951 kb on - strand, within DDA3937_RS00965 at 222.965 kb on + strand, within DDA3937_RS00965 at 222.966 kb on - strand, within DDA3937_RS00965 at 222.966 kb on - strand, within DDA3937_RS00965 at 223.068 kb on - strand, within DDA3937_RS00965 at 223.122 kb on + strand, within DDA3937_RS00965 at 223.123 kb on - strand, within DDA3937_RS00965 at 223.161 kb on + strand, within DDA3937_RS00965 at 223.164 kb on + strand, within DDA3937_RS00965 at 223.164 kb on + strand, within DDA3937_RS00965 at 223.209 kb on + strand, within DDA3937_RS00965 at 223.210 kb on - strand, within DDA3937_RS00965 at 223.210 kb on - strand, within DDA3937_RS00965 at 223.228 kb on + strand, within DDA3937_RS00965 at 223.229 kb on - strand, within DDA3937_RS00965 at 223.275 kb on + strand, within DDA3937_RS00965 at 223.275 kb on + strand, within DDA3937_RS00965 at 223.276 kb on - strand, within DDA3937_RS00965 at 223.276 kb on - strand at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.277 kb on + strand, within DDA3937_RS00965 at 223.278 kb on - strand, within DDA3937_RS00965 at 223.278 kb on - strand, within DDA3937_RS00965 at 223.311 kb on + strand, within DDA3937_RS00965 at 223.339 kb on + strand, within DDA3937_RS00965 at 223.340 kb on - strand, within DDA3937_RS00965 at 223.411 kb on + strand at 223.527 kb on - strand at 223.527 kb on - strand at 223.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 220,661 + DDA3937_RS00955 0.74 -1.6 220,662 - DDA3937_RS00955 0.74 +1.6 220,662 - +0.7 220,697 + DDA3937_RS00955 0.75 +0.7 220,697 + DDA3937_RS00955 0.75 +0.4 220,697 + DDA3937_RS00955 0.75 -1.2 220,698 - DDA3937_RS00955 0.75 -1.4 220,698 - DDA3937_RS00955 0.75 -1.8 220,698 - DDA3937_RS00955 0.75 -1.3 220,698 - DDA3937_RS00955 0.75 +1.7 220,698 - DDA3937_RS00955 0.75 -0.6 220,698 - DDA3937_RS00955 0.75 +1.5 220,750 + DDA3937_RS00955 0.77 +0.1 220,750 + DDA3937_RS00955 0.77 -1.6 220,808 - DDA3937_RS00955 0.80 +2.7 220,900 + DDA3937_RS00955 0.84 -0.5 221,079 - +2.0 221,115 + +0.5 221,170 + -1.1 221,247 + -0.3 221,414 - +1.3 221,414 - -2.2 221,424 + -0.9 221,424 + -0.4 221,424 + -1.3 221,425 - -1.1 221,425 - -1.6 221,425 - -3.7 221,425 - -0.5 221,425 - -1.5 221,425 - -0.1 221,425 - -2.0 221,432 - +1.1 221,444 + +2.0 221,444 + -1.1 221,444 + -0.2 221,445 - +1.0 221,445 - +1.0 221,445 - +1.3 221,449 - -0.3 221,449 - +0.2 221,526 + +1.8 221,526 + +0.7 221,526 + +1.2 221,611 - -0.6 221,611 - +0.5 221,619 + -1.0 221,620 - +0.0 221,635 + +0.8 221,635 + +1.8 221,636 - +0.3 221,636 - -1.4 221,641 + -1.7 221,642 - -0.6 221,642 - -2.8 221,642 - +1.1 221,697 + -3.5 221,697 + +2.1 221,697 + -0.6 221,711 - -0.8 221,800 + DDA3937_RS00960 0.18 +1.5 221,800 + DDA3937_RS00960 0.18 -2.8 221,801 - DDA3937_RS00960 0.18 -2.5 221,819 + DDA3937_RS00960 0.20 -1.9 221,820 - DDA3937_RS00960 0.20 +1.3 221,820 - DDA3937_RS00960 0.20 -0.1 221,881 + DDA3937_RS00960 0.27 -1.2 221,881 + DDA3937_RS00960 0.27 -2.8 222,019 + DDA3937_RS00960 0.42 -2.2 222,032 + DDA3937_RS00960 0.43 -2.5 222,032 + DDA3937_RS00960 0.43 +0.9 222,032 + DDA3937_RS00960 0.43 -0.9 222,032 + DDA3937_RS00960 0.43 -0.2 222,032 + DDA3937_RS00960 0.43 +1.3 222,032 + DDA3937_RS00960 0.43 +0.2 222,033 - DDA3937_RS00960 0.44 -1.2 222,033 - DDA3937_RS00960 0.44 -2.0 222,033 - DDA3937_RS00960 0.44 -0.6 222,033 - DDA3937_RS00960 0.44 -1.3 222,033 - DDA3937_RS00960 0.44 -1.3 222,033 - DDA3937_RS00960 0.44 -0.6 222,080 - DDA3937_RS00960 0.49 -3.4 222,080 - DDA3937_RS00960 0.49 -1.7 222,080 - DDA3937_RS00960 0.49 -2.1 222,096 - DDA3937_RS00960 0.51 -0.8 222,142 + DDA3937_RS00960 0.56 -1.1 222,143 - DDA3937_RS00960 0.56 -0.2 222,143 - DDA3937_RS00960 0.56 -0.2 222,418 + DDA3937_RS00960 0.87 -2.6 222,419 - DDA3937_RS00960 0.87 -0.6 222,419 - DDA3937_RS00960 0.87 -2.4 222,464 + +1.9 222,464 + -0.8 222,464 + -0.9 222,465 - +0.3 222,465 - -1.7 222,465 - -3.2 222,491 + -1.3 222,492 - +0.0 222,492 - -3.1 222,505 + -0.1 222,505 + -1.2 222,506 - -2.2 222,506 - -2.2 222,506 - -1.3 222,581 + -0.5 222,603 + +1.4 222,603 + -0.5 222,604 - -0.8 222,604 - -0.4 222,614 + +1.2 222,778 + -0.5 222,778 + -2.3 222,779 - -0.6 222,779 - -0.9 222,795 + DDA3937_RS00965 0.11 -0.3 222,795 + DDA3937_RS00965 0.11 +2.4 222,795 + DDA3937_RS00965 0.11 -1.9 222,795 + DDA3937_RS00965 0.11 -2.2 222,796 - DDA3937_RS00965 0.11 +1.9 222,922 - DDA3937_RS00965 0.28 +1.4 222,948 + +0.7 222,948 + DDA3937_RS00965 0.31 -1.9 222,948 + DDA3937_RS00965 0.31 +0.5 222,948 + DDA3937_RS00965 0.31 +1.4 222,948 + DDA3937_RS00965 0.31 +0.5 222,949 - DDA3937_RS00965 0.32 -0.6 222,949 - DDA3937_RS00965 0.32 +3.5 222,949 - DDA3937_RS00965 0.32 +0.0 222,950 + DDA3937_RS00965 0.32 +0.6 222,950 + DDA3937_RS00965 0.32 +1.7 222,950 + DDA3937_RS00965 0.32 +0.0 222,951 - DDA3937_RS00965 0.32 +1.2 222,951 - DDA3937_RS00965 0.32 -1.6 222,951 - DDA3937_RS00965 0.32 -0.4 222,951 - DDA3937_RS00965 0.32 +1.0 222,951 - DDA3937_RS00965 0.32 +0.9 222,951 - DDA3937_RS00965 0.32 -1.5 222,965 + DDA3937_RS00965 0.34 -1.5 222,966 - DDA3937_RS00965 0.34 +0.4 222,966 - DDA3937_RS00965 0.34 -0.8 223,068 - DDA3937_RS00965 0.48 -0.4 223,122 + DDA3937_RS00965 0.55 -2.1 223,123 - DDA3937_RS00965 0.55 -0.5 223,161 + DDA3937_RS00965 0.61 -0.4 223,164 + DDA3937_RS00965 0.61 -1.3 223,164 + DDA3937_RS00965 0.61 +0.0 223,209 + DDA3937_RS00965 0.67 -0.3 223,210 - DDA3937_RS00965 0.67 +1.5 223,210 - DDA3937_RS00965 0.67 +1.0 223,228 + DDA3937_RS00965 0.70 -2.2 223,229 - DDA3937_RS00965 0.70 -3.0 223,275 + DDA3937_RS00965 0.76 -0.2 223,275 + DDA3937_RS00965 0.76 +0.1 223,276 - DDA3937_RS00965 0.76 -1.8 223,276 - +0.7 223,277 + DDA3937_RS00965 0.76 -0.3 223,277 + DDA3937_RS00965 0.76 +2.9 223,277 + DDA3937_RS00965 0.76 -1.3 223,277 + DDA3937_RS00965 0.76 -1.6 223,277 + DDA3937_RS00965 0.76 +1.5 223,277 + DDA3937_RS00965 0.76 +0.7 223,277 + DDA3937_RS00965 0.76 -2.6 223,278 - DDA3937_RS00965 0.77 -2.8 223,278 - DDA3937_RS00965 0.77 -0.3 223,311 + DDA3937_RS00965 0.81 +1.4 223,339 + DDA3937_RS00965 0.85 +0.6 223,340 - DDA3937_RS00965 0.85 +2.7 223,411 + +0.2 223,527 - -1.4 223,527 - +1.7 223,527 - +1.0
Or see this region's nucleotide sequence