Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00705 and DDA3937_RS00710 are separated by 814 nucleotides DDA3937_RS00710 and DDA3937_RS00715 are separated by 466 nucleotides
DDA3937_RS00705: DDA3937_RS00705 - MCP four helix bundle domain-containing protein, at 163,808 to 165,436
_RS00705
DDA3937_RS00710: DDA3937_RS00710 - MCP four helix bundle domain-containing protein, at 166,251 to 167,912
_RS00710
DDA3937_RS00715: DDA3937_RS00715 - MCP four helix bundle domain-containing protein, at 168,379 to 170,061
_RS00715
Position (kb) 166
167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 165.270 kb on - strand, within DDA3937_RS00705 at 165.319 kb on + strand at 165.319 kb on + strand at 165.319 kb on + strand at 165.320 kb on - strand at 165.320 kb on - strand at 165.333 kb on - strand at 165.338 kb on + strand at 165.338 kb on + strand at 165.338 kb on + strand at 165.338 kb on + strand at 165.339 kb on - strand at 165.451 kb on + strand at 165.452 kb on - strand at 165.454 kb on - strand at 165.454 kb on - strand at 165.455 kb on + strand at 165.455 kb on + strand at 165.455 kb on + strand at 165.456 kb on - strand at 165.456 kb on - strand at 165.462 kb on + strand at 165.477 kb on + strand at 165.477 kb on + strand at 165.479 kb on + strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.488 kb on + strand at 165.488 kb on + strand at 165.489 kb on - strand at 165.599 kb on - strand at 165.609 kb on + strand at 165.609 kb on + strand at 165.610 kb on - strand at 165.610 kb on - strand at 165.610 kb on - strand at 165.613 kb on + strand at 165.613 kb on + strand at 165.613 kb on + strand at 165.613 kb on + strand at 165.614 kb on - strand at 165.700 kb on + strand at 165.749 kb on + strand at 165.750 kb on - strand at 165.754 kb on - strand at 165.841 kb on - strand at 165.854 kb on - strand at 165.893 kb on + strand at 165.918 kb on - strand at 165.958 kb on + strand at 166.031 kb on + strand at 166.253 kb on - strand at 166.283 kb on + strand at 166.350 kb on - strand at 166.365 kb on - strand at 166.367 kb on + strand at 166.367 kb on + strand at 166.367 kb on + strand at 166.368 kb on - strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.372 kb on - strand at 166.372 kb on - strand at 166.505 kb on + strand, within DDA3937_RS00710 at 166.580 kb on + strand, within DDA3937_RS00710 at 166.611 kb on + strand, within DDA3937_RS00710 at 166.612 kb on - strand, within DDA3937_RS00710 at 166.612 kb on - strand, within DDA3937_RS00710 at 166.945 kb on - strand, within DDA3937_RS00710 at 166.967 kb on + strand, within DDA3937_RS00710 at 166.988 kb on + strand, within DDA3937_RS00710 at 166.988 kb on + strand, within DDA3937_RS00710 at 167.007 kb on + strand, within DDA3937_RS00710 at 167.124 kb on + strand, within DDA3937_RS00710 at 167.125 kb on - strand, within DDA3937_RS00710 at 167.139 kb on - strand, within DDA3937_RS00710 at 167.229 kb on - strand, within DDA3937_RS00710 at 167.237 kb on + strand, within DDA3937_RS00710 at 167.237 kb on + strand, within DDA3937_RS00710 at 167.237 kb on + strand at 167.238 kb on - strand, within DDA3937_RS00710 at 167.238 kb on - strand, within DDA3937_RS00710 at 167.238 kb on - strand, within DDA3937_RS00710 at 167.239 kb on + strand, within DDA3937_RS00710 at 167.239 kb on + strand, within DDA3937_RS00710 at 167.239 kb on + strand, within DDA3937_RS00710 at 167.240 kb on - strand, within DDA3937_RS00710 at 167.240 kb on - strand, within DDA3937_RS00710 at 167.240 kb on - strand, within DDA3937_RS00710 at 167.240 kb on - strand, within DDA3937_RS00710 at 167.240 kb on - strand, within DDA3937_RS00710 at 167.240 kb on - strand, within DDA3937_RS00710 at 167.319 kb on - strand, within DDA3937_RS00710 at 167.405 kb on - strand, within DDA3937_RS00710 at 167.405 kb on - strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.434 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.556 kb on + strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.557 kb on - strand, within DDA3937_RS00710 at 167.614 kb on - strand, within DDA3937_RS00710 at 167.633 kb on + strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.634 kb on - strand, within DDA3937_RS00710 at 167.645 kb on + strand, within DDA3937_RS00710 at 167.646 kb on - strand, within DDA3937_RS00710 at 167.667 kb on + strand, within DDA3937_RS00710 at 167.730 kb on - strand, within DDA3937_RS00710 at 167.746 kb on - strand at 167.825 kb on - strand at 167.825 kb on - strand at 167.828 kb on + strand at 167.829 kb on - strand at 167.829 kb on - strand at 167.846 kb on + strand at 167.846 kb on + strand at 167.883 kb on - strand at 167.885 kb on + strand at 167.886 kb on - strand at 167.900 kb on + strand at 167.904 kb on - strand at 167.932 kb on - strand at 167.992 kb on - strand at 168.040 kb on + strand at 168.040 kb on + strand at 168.041 kb on - strand at 168.132 kb on + strand at 168.137 kb on - strand at 168.168 kb on + strand at 168.187 kb on + strand at 168.375 kb on - strand at 168.489 kb on + strand at 168.495 kb on + strand at 168.495 kb on + strand at 168.496 kb on - strand at 168.511 kb on + strand at 168.511 kb on + strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.512 kb on - strand at 168.633 kb on + strand, within DDA3937_RS00715 at 168.633 kb on + strand, within DDA3937_RS00715 at 168.697 kb on + strand, within DDA3937_RS00715 at 168.697 kb on + strand, within DDA3937_RS00715 at 168.698 kb on - strand, within DDA3937_RS00715
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 165,270 - DDA3937_RS00705 0.90 -0.1 165,319 + -0.8 165,319 + +0.1 165,319 + +1.7 165,320 - +1.5 165,320 - -0.9 165,333 - -1.1 165,338 + +0.4 165,338 + -1.5 165,338 + -0.2 165,338 + -1.3 165,339 - +0.6 165,451 + -0.3 165,452 - +0.4 165,454 - -1.4 165,454 - -2.5 165,455 + -1.7 165,455 + -0.1 165,455 + -1.8 165,456 - -1.5 165,456 - +0.6 165,462 + -0.6 165,477 + -1.9 165,477 + +0.6 165,479 + +1.2 165,480 - +0.4 165,480 - -0.9 165,480 - -0.0 165,488 + +1.3 165,488 + -1.2 165,489 - +0.9 165,599 - +0.6 165,609 + +1.5 165,609 + -0.7 165,610 - +0.6 165,610 - +1.5 165,610 - -2.0 165,613 + -1.8 165,613 + +0.1 165,613 + -0.3 165,613 + +1.2 165,614 - -0.3 165,700 + -2.5 165,749 + -1.2 165,750 - +1.4 165,754 - -2.2 165,841 - +2.4 165,854 - +0.5 165,893 + +1.3 165,918 - -0.9 165,958 + +0.4 166,031 + -1.5 166,253 - +1.9 166,283 + +2.6 166,350 - +0.2 166,365 - -0.3 166,367 + +0.6 166,367 + -0.1 166,367 + -1.0 166,368 - -0.6 166,371 + +0.2 166,371 + +1.0 166,371 + +1.7 166,371 + -0.8 166,371 + -3.7 166,371 + -1.8 166,371 + +3.3 166,372 - -0.6 166,372 - +1.1 166,505 + DDA3937_RS00710 0.15 +0.4 166,580 + DDA3937_RS00710 0.20 -0.1 166,611 + DDA3937_RS00710 0.22 +1.7 166,612 - DDA3937_RS00710 0.22 +0.2 166,612 - DDA3937_RS00710 0.22 -0.5 166,945 - DDA3937_RS00710 0.42 -0.2 166,967 + DDA3937_RS00710 0.43 +0.2 166,988 + DDA3937_RS00710 0.44 -3.0 166,988 + DDA3937_RS00710 0.44 -2.0 167,007 + DDA3937_RS00710 0.45 +0.3 167,124 + DDA3937_RS00710 0.53 -0.9 167,125 - DDA3937_RS00710 0.53 -0.3 167,139 - DDA3937_RS00710 0.53 -1.1 167,229 - DDA3937_RS00710 0.59 +2.0 167,237 + DDA3937_RS00710 0.59 -1.8 167,237 + DDA3937_RS00710 0.59 -1.6 167,237 + +2.3 167,238 - DDA3937_RS00710 0.59 -0.4 167,238 - DDA3937_RS00710 0.59 -0.9 167,238 - DDA3937_RS00710 0.59 +2.5 167,239 + DDA3937_RS00710 0.59 -2.1 167,239 + DDA3937_RS00710 0.59 -2.1 167,239 + DDA3937_RS00710 0.59 +1.3 167,240 - DDA3937_RS00710 0.60 +0.9 167,240 - DDA3937_RS00710 0.60 +1.7 167,240 - DDA3937_RS00710 0.60 -2.9 167,240 - DDA3937_RS00710 0.60 -2.5 167,240 - DDA3937_RS00710 0.60 -0.5 167,240 - DDA3937_RS00710 0.60 -1.8 167,319 - DDA3937_RS00710 0.64 -0.9 167,405 - DDA3937_RS00710 0.69 +0.8 167,405 - DDA3937_RS00710 0.69 +1.3 167,434 + DDA3937_RS00710 0.71 -0.1 167,434 + DDA3937_RS00710 0.71 +1.8 167,434 + DDA3937_RS00710 0.71 -2.4 167,434 + DDA3937_RS00710 0.71 -0.6 167,434 + DDA3937_RS00710 0.71 +1.0 167,556 + DDA3937_RS00710 0.79 -1.6 167,556 + DDA3937_RS00710 0.79 -0.3 167,556 + DDA3937_RS00710 0.79 -0.9 167,556 + DDA3937_RS00710 0.79 +0.1 167,557 - DDA3937_RS00710 0.79 -0.6 167,557 - DDA3937_RS00710 0.79 -1.9 167,557 - DDA3937_RS00710 0.79 +0.3 167,557 - DDA3937_RS00710 0.79 -0.3 167,557 - DDA3937_RS00710 0.79 -1.8 167,614 - DDA3937_RS00710 0.82 +1.6 167,633 + DDA3937_RS00710 0.83 -1.5 167,634 - DDA3937_RS00710 0.83 -1.0 167,634 - DDA3937_RS00710 0.83 -1.1 167,634 - DDA3937_RS00710 0.83 -0.3 167,645 + DDA3937_RS00710 0.84 +1.0 167,646 - DDA3937_RS00710 0.84 -1.5 167,667 + DDA3937_RS00710 0.85 -3.0 167,730 - DDA3937_RS00710 0.89 +2.7 167,746 - +0.5 167,825 - -1.5 167,825 - -1.2 167,828 + +0.2 167,829 - -1.3 167,829 - +0.5 167,846 + -0.3 167,846 + -0.9 167,883 - +2.5 167,885 + -0.1 167,886 - -0.5 167,900 + -0.9 167,904 - +1.5 167,932 - +0.1 167,992 - +0.8 168,040 + -0.9 168,040 + +0.8 168,041 - -1.3 168,132 + +4.2 168,137 - -0.8 168,168 + +0.7 168,187 + +0.1 168,375 - -1.3 168,489 + +1.7 168,495 + -1.1 168,495 + -0.3 168,496 - -0.2 168,511 + +1.2 168,511 + -1.6 168,512 - +0.8 168,512 - -2.4 168,512 - -2.1 168,512 - +1.4 168,512 - +0.1 168,512 - -2.6 168,633 + DDA3937_RS00715 0.15 +1.2 168,633 + DDA3937_RS00715 0.15 -1.5 168,697 + DDA3937_RS00715 0.19 -0.3 168,697 + DDA3937_RS00715 0.19 -2.6 168,698 - DDA3937_RS00715 0.19 -3.6
Or see this region's nucleotide sequence