Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00700 and DDA3937_RS00705 are separated by 445 nucleotides DDA3937_RS00705 and DDA3937_RS00710 are separated by 814 nucleotides
DDA3937_RS00700: DDA3937_RS00700 - MCP four helix bundle domain-containing protein, at 161,743 to 163,362
_RS00700
DDA3937_RS00705: DDA3937_RS00705 - MCP four helix bundle domain-containing protein, at 163,808 to 165,436
_RS00705
DDA3937_RS00710: DDA3937_RS00710 - MCP four helix bundle domain-containing protein, at 166,251 to 167,912
_RS00710
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 163.005 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.066 kb on + strand, within DDA3937_RS00700 at 163.067 kb on - strand, within DDA3937_RS00700 at 163.067 kb on - strand, within DDA3937_RS00700 at 163.078 kb on - strand, within DDA3937_RS00700 at 163.185 kb on + strand, within DDA3937_RS00700 at 163.210 kb on - strand at 163.232 kb on + strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.233 kb on - strand at 163.242 kb on + strand at 163.259 kb on - strand at 163.287 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.309 kb on + strand at 163.310 kb on - strand at 163.310 kb on - strand at 163.310 kb on - strand at 163.311 kb on + strand at 163.311 kb on + strand at 163.312 kb on - strand at 163.312 kb on - strand at 163.344 kb on + strand at 163.352 kb on - strand at 163.363 kb on + strand at 163.363 kb on + strand at 163.372 kb on + strand at 163.372 kb on + strand at 163.378 kb on - strand at 163.378 kb on - strand at 163.400 kb on - strand at 163.434 kb on + strand at 163.434 kb on + strand at 163.435 kb on - strand at 163.435 kb on - strand at 163.435 kb on - strand at 163.482 kb on - strand at 163.482 kb on - strand at 163.535 kb on + strand at 163.535 kb on + strand at 163.539 kb on + strand at 163.558 kb on - strand at 163.686 kb on + strand at 163.686 kb on + strand at 163.731 kb on + strand at 163.731 kb on + strand at 163.732 kb on - strand at 163.732 kb on - strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.733 kb on + strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.734 kb on - strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.735 kb on + strand at 163.736 kb on - strand at 163.744 kb on + strand at 163.792 kb on + strand at 163.793 kb on - strand at 163.795 kb on - strand at 163.810 kb on - strand at 163.810 kb on - strand at 163.832 kb on + strand at 164.113 kb on + strand, within DDA3937_RS00705 at 164.113 kb on + strand, within DDA3937_RS00705 at 164.113 kb on + strand, within DDA3937_RS00705 at 164.344 kb on + strand, within DDA3937_RS00705 at 164.345 kb on - strand, within DDA3937_RS00705 at 164.386 kb on + strand, within DDA3937_RS00705 at 164.406 kb on - strand, within DDA3937_RS00705 at 164.432 kb on - strand, within DDA3937_RS00705 at 164.665 kb on + strand, within DDA3937_RS00705 at 164.665 kb on + strand, within DDA3937_RS00705 at 164.665 kb on + strand, within DDA3937_RS00705 at 164.665 kb on + strand, within DDA3937_RS00705 at 164.666 kb on - strand, within DDA3937_RS00705 at 164.752 kb on + strand, within DDA3937_RS00705 at 164.763 kb on + strand, within DDA3937_RS00705 at 164.763 kb on + strand, within DDA3937_RS00705 at 164.763 kb on + strand, within DDA3937_RS00705 at 164.763 kb on + strand, within DDA3937_RS00705 at 164.763 kb on + strand, within DDA3937_RS00705 at 164.763 kb on + strand, within DDA3937_RS00705 at 164.764 kb on - strand, within DDA3937_RS00705 at 164.764 kb on - strand, within DDA3937_RS00705 at 164.864 kb on + strand, within DDA3937_RS00705 at 164.864 kb on + strand, within DDA3937_RS00705 at 164.864 kb on + strand, within DDA3937_RS00705 at 164.865 kb on - strand, within DDA3937_RS00705 at 164.865 kb on - strand, within DDA3937_RS00705 at 164.865 kb on - strand, within DDA3937_RS00705 at 164.865 kb on - strand, within DDA3937_RS00705 at 164.959 kb on + strand, within DDA3937_RS00705 at 164.959 kb on + strand, within DDA3937_RS00705 at 164.959 kb on + strand, within DDA3937_RS00705 at 164.959 kb on + strand, within DDA3937_RS00705 at 164.959 kb on + strand, within DDA3937_RS00705 at 164.960 kb on - strand, within DDA3937_RS00705 at 164.960 kb on - strand, within DDA3937_RS00705 at 164.960 kb on - strand, within DDA3937_RS00705 at 164.960 kb on - strand, within DDA3937_RS00705 at 165.017 kb on - strand, within DDA3937_RS00705 at 165.061 kb on - strand, within DDA3937_RS00705 at 165.089 kb on + strand, within DDA3937_RS00705 at 165.089 kb on + strand, within DDA3937_RS00705 at 165.124 kb on + strand, within DDA3937_RS00705 at 165.270 kb on - strand, within DDA3937_RS00705 at 165.319 kb on + strand at 165.319 kb on + strand at 165.319 kb on + strand at 165.320 kb on - strand at 165.320 kb on - strand at 165.333 kb on - strand at 165.338 kb on + strand at 165.338 kb on + strand at 165.338 kb on + strand at 165.338 kb on + strand at 165.339 kb on - strand at 165.451 kb on + strand at 165.452 kb on - strand at 165.454 kb on - strand at 165.454 kb on - strand at 165.455 kb on + strand at 165.455 kb on + strand at 165.455 kb on + strand at 165.456 kb on - strand at 165.456 kb on - strand at 165.462 kb on + strand at 165.477 kb on + strand at 165.477 kb on + strand at 165.479 kb on + strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.480 kb on - strand at 165.488 kb on + strand at 165.488 kb on + strand at 165.489 kb on - strand at 165.599 kb on - strand at 165.609 kb on + strand at 165.609 kb on + strand at 165.610 kb on - strand at 165.610 kb on - strand at 165.610 kb on - strand at 165.613 kb on + strand at 165.613 kb on + strand at 165.613 kb on + strand at 165.613 kb on + strand at 165.614 kb on - strand at 165.700 kb on + strand at 165.749 kb on + strand at 165.750 kb on - strand at 165.754 kb on - strand at 165.841 kb on - strand at 165.854 kb on - strand at 165.893 kb on + strand at 165.918 kb on - strand at 165.958 kb on + strand at 166.031 kb on + strand at 166.253 kb on - strand at 166.283 kb on + strand at 166.350 kb on - strand at 166.365 kb on - strand at 166.367 kb on + strand at 166.367 kb on + strand at 166.367 kb on + strand at 166.368 kb on - strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.371 kb on + strand at 166.372 kb on - strand at 166.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 163,005 + DDA3937_RS00700 0.78 -0.9 163,066 + DDA3937_RS00700 0.82 +0.4 163,066 + DDA3937_RS00700 0.82 +0.5 163,066 + DDA3937_RS00700 0.82 +0.1 163,067 - DDA3937_RS00700 0.82 -1.9 163,067 - DDA3937_RS00700 0.82 -1.4 163,078 - DDA3937_RS00700 0.82 -0.2 163,185 + DDA3937_RS00700 0.89 -0.6 163,210 - -1.5 163,232 + -0.9 163,233 - +0.2 163,233 - -0.3 163,233 - +0.5 163,233 - +0.2 163,242 + -1.6 163,259 - +1.3 163,287 + -1.2 163,309 + -1.2 163,309 + +2.3 163,309 + -0.3 163,309 + -0.9 163,310 - -1.2 163,310 - -0.9 163,310 - -1.8 163,311 + -0.7 163,311 + +0.7 163,312 - +2.4 163,312 - -1.9 163,344 + +0.8 163,352 - -0.4 163,363 + +0.1 163,363 + +3.2 163,372 + -2.1 163,372 + -2.0 163,378 - -0.6 163,378 - -2.0 163,400 - -1.8 163,434 + +0.4 163,434 + +1.6 163,435 - -1.4 163,435 - -1.1 163,435 - -2.2 163,482 - +2.3 163,482 - +1.7 163,535 + -1.4 163,535 + -2.5 163,539 + +1.0 163,558 - -1.1 163,686 + +0.7 163,686 + +0.4 163,731 + -0.6 163,731 + +0.7 163,732 - -0.9 163,732 - -0.8 163,733 + +1.5 163,733 + -1.0 163,733 + +1.3 163,733 + -0.7 163,733 + -0.9 163,734 - -1.5 163,734 - -1.9 163,734 - -1.8 163,734 - -0.6 163,734 - -2.6 163,734 - +0.1 163,734 - -2.3 163,734 - -0.0 163,734 - +1.7 163,734 - -2.3 163,735 + +2.3 163,735 + +1.1 163,735 + -0.3 163,735 + +0.5 163,735 + +1.8 163,736 - +2.4 163,744 + +2.4 163,792 + -1.5 163,793 - -0.3 163,795 - +0.4 163,810 - +2.4 163,810 - -1.5 163,832 + -1.8 164,113 + DDA3937_RS00705 0.19 +1.9 164,113 + DDA3937_RS00705 0.19 +0.2 164,113 + DDA3937_RS00705 0.19 +0.1 164,344 + DDA3937_RS00705 0.33 -2.1 164,345 - DDA3937_RS00705 0.33 -1.2 164,386 + DDA3937_RS00705 0.35 +0.1 164,406 - DDA3937_RS00705 0.37 +0.0 164,432 - DDA3937_RS00705 0.38 +1.2 164,665 + DDA3937_RS00705 0.53 -0.6 164,665 + DDA3937_RS00705 0.53 -0.6 164,665 + DDA3937_RS00705 0.53 -1.3 164,665 + DDA3937_RS00705 0.53 -2.1 164,666 - DDA3937_RS00705 0.53 +1.7 164,752 + DDA3937_RS00705 0.58 -3.4 164,763 + DDA3937_RS00705 0.59 -0.9 164,763 + DDA3937_RS00705 0.59 +1.1 164,763 + DDA3937_RS00705 0.59 +0.8 164,763 + DDA3937_RS00705 0.59 -1.5 164,763 + DDA3937_RS00705 0.59 +1.1 164,763 + DDA3937_RS00705 0.59 -2.2 164,764 - DDA3937_RS00705 0.59 -3.0 164,764 - DDA3937_RS00705 0.59 +2.6 164,864 + DDA3937_RS00705 0.65 +0.1 164,864 + DDA3937_RS00705 0.65 -0.3 164,864 + DDA3937_RS00705 0.65 +2.2 164,865 - DDA3937_RS00705 0.65 -0.4 164,865 - DDA3937_RS00705 0.65 -0.3 164,865 - DDA3937_RS00705 0.65 -1.9 164,865 - DDA3937_RS00705 0.65 -1.8 164,959 + DDA3937_RS00705 0.71 -1.3 164,959 + DDA3937_RS00705 0.71 -0.3 164,959 + DDA3937_RS00705 0.71 -0.4 164,959 + DDA3937_RS00705 0.71 -0.1 164,959 + DDA3937_RS00705 0.71 -1.6 164,960 - DDA3937_RS00705 0.71 +1.1 164,960 - DDA3937_RS00705 0.71 +1.4 164,960 - DDA3937_RS00705 0.71 -1.9 164,960 - DDA3937_RS00705 0.71 +1.2 165,017 - DDA3937_RS00705 0.74 +2.8 165,061 - DDA3937_RS00705 0.77 +0.1 165,089 + DDA3937_RS00705 0.79 -0.9 165,089 + DDA3937_RS00705 0.79 +2.5 165,124 + DDA3937_RS00705 0.81 +0.3 165,270 - DDA3937_RS00705 0.90 -0.1 165,319 + -0.8 165,319 + +0.1 165,319 + +1.7 165,320 - +1.5 165,320 - -0.9 165,333 - -1.1 165,338 + +0.4 165,338 + -1.5 165,338 + -0.2 165,338 + -1.3 165,339 - +0.6 165,451 + -0.3 165,452 - +0.4 165,454 - -1.4 165,454 - -2.5 165,455 + -1.7 165,455 + -0.1 165,455 + -1.8 165,456 - -1.5 165,456 - +0.6 165,462 + -0.6 165,477 + -1.9 165,477 + +0.6 165,479 + +1.2 165,480 - +0.4 165,480 - -0.9 165,480 - -0.0 165,488 + +1.3 165,488 + -1.2 165,489 - +0.9 165,599 - +0.6 165,609 + +1.5 165,609 + -0.7 165,610 - +0.6 165,610 - +1.5 165,610 - -2.0 165,613 + -1.8 165,613 + +0.1 165,613 + -0.3 165,613 + +1.2 165,614 - -0.3 165,700 + -2.5 165,749 + -1.2 165,750 - +1.4 165,754 - -2.2 165,841 - +2.4 165,854 - +0.5 165,893 + +1.3 165,918 - -0.9 165,958 + +0.4 166,031 + -1.5 166,253 - +1.9 166,283 + +2.6 166,350 - +0.2 166,365 - -0.3 166,367 + +0.6 166,367 + -0.1 166,367 + -1.0 166,368 - -0.6 166,371 + +0.2 166,371 + +1.0 166,371 + +1.7 166,371 + -0.8 166,371 + -3.7 166,371 + -1.8 166,371 + +3.3 166,372 - -0.6 166,372 - +1.1
Or see this region's nucleotide sequence