Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00460

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
108,097	+				-1.1
108,101	+				-2.5
108,156	+				-0.8
108,161	-				-1.0
108,207	+				+0.7
108,233	+				-1.5
108,234	-				-2.5
108,235	+				+0.7
108,235	+				+0.1
108,238	-				-2.1
108,342	+				+3.4
108,342	+				+0.9
108,342	+				+1.1
108,343	-				-1.8
108,372	+				+1.3
108,372	+				-2.2
108,398	+				+0.7
108,401	-				-2.0
108,401	-				-0.2
108,425	-				+2.0
108,452	-				-1.0
108,457	+				+0.0
108,457	+				-0.6
108,457	+				+0.4
108,457	+				-2.5
108,457	+				-1.3
108,457	+				-1.3
108,457	+				-0.9
108,457	+				-0.6
108,458	-				-1.0
108,458	-				+0.4
108,458	-				+1.5
108,458	-				-0.1
108,458	-				+0.5
108,458	-				+1.3
108,458	-				-0.1
108,485	+				-2.3
108,486	-				+1.0
108,521	-				-0.0
108,530	+				-2.5
108,530	+				+0.0
108,530	+				+3.4
108,530	+				-0.7
108,531	-				-1.3
108,566	+				+1.0
108,567	-				+2.7
108,567	-				-1.6
108,576	+				+0.1
108,576	+				+0.2
108,577	-				+0.8
108,577	-				-3.4
108,607	+				-0.7
108,607	+				+0.8
108,607	+				+0.5
108,607	+				-0.3
108,608	-				-0.9
108,639	+				+1.5
108,661	+				+1.9
108,672	+				+2.4
108,673	-				-0.2
108,673	-				+0.7
108,674	+				-1.6
108,704	-				-2.1
108,718	+				+0.1
108,718	+				-0.7
108,719	-				+0.9
108,719	-				-4.6
108,719	-				+1.2
108,719	-				-0.1
108,782	-				-1.6
108,782	-				+2.9
108,782	-				-2.3
108,794	+				-1.5
108,794	+				+2.1
108,860	+		DDA3937_RS22950	0.22	-0.3
108,860	+		DDA3937_RS22950	0.22	-1.4
108,863	+		DDA3937_RS22950	0.23	-0.3
108,863	+		DDA3937_RS22950	0.23	+1.2
108,863	+		DDA3937_RS22950	0.23	-0.2
108,864	-		DDA3937_RS22950	0.23	+0.2
108,866	+		DDA3937_RS22950	0.24	+2.4
108,866	+		DDA3937_RS22950	0.24	-0.0
108,866	+		DDA3937_RS22950	0.24	-1.6
108,866	+		DDA3937_RS22950	0.24	-1.3
108,866	+		DDA3937_RS22950	0.24	-3.4
108,866	+		DDA3937_RS22950	0.24	+0.9
108,866	+		DDA3937_RS22950	0.24	+0.9
108,867	-		DDA3937_RS22950	0.24	-0.2
108,867	-		DDA3937_RS22950	0.24	-1.9
108,867	-		DDA3937_RS22950	0.24	+2.3
108,867	-		DDA3937_RS22950	0.24	+1.3
108,867	-		DDA3937_RS22950	0.24	+0.9
108,867	-		DDA3937_RS22950	0.24	+1.0
108,911	+		DDA3937_RS22950	0.39	+3.0
108,912	-		DDA3937_RS22950	0.40	-0.6
108,926	+		DDA3937_RS22950	0.45	+1.0
108,942	-		DDA3937_RS22950	0.50	-0.7
109,079	+				+1.4
109,079	+				+0.6
109,080	-				-0.9
109,080	-				-0.3
109,080	-				-1.1
109,080	-				-1.6
109,080	-				-1.1
109,080	-				-0.6
109,177	+				-0.2
109,177	+				+0.4
109,178	-				-0.6
109,178	-				-1.0
109,178	-				+3.3
109,178	-				-0.1
109,258	-		DDA3937_RS00460	0.11	-1.6
109,261	+		DDA3937_RS00460	0.11	-0.6
109,261	+		DDA3937_RS00460	0.11	-0.0
109,261	+		DDA3937_RS00460	0.11	-0.6
109,261	+		DDA3937_RS00460	0.11	-3.5
109,351	+		DDA3937_RS00460	0.17	-2.6
109,351	+		DDA3937_RS00460	0.17	-1.5
109,351	+		DDA3937_RS00460	0.17	+1.9
109,351	+		DDA3937_RS00460	0.17	-1.1
109,353	+				+0.7
109,353	+		DDA3937_RS00460	0.17	-0.1
109,353	+		DDA3937_RS00460	0.17	-2.0
109,354	-		DDA3937_RS00460	0.17	+1.3
109,354	-		DDA3937_RS00460	0.17	-1.0
109,354	-		DDA3937_RS00460	0.17	-1.5
109,392	+		DDA3937_RS00460	0.19	-2.1
109,392	+		DDA3937_RS00460	0.19	-1.0
109,413	+		DDA3937_RS00460	0.21	-0.9
109,414	-		DDA3937_RS00460	0.21	-0.4
109,498	+		DDA3937_RS00460	0.26	-1.3
109,499	-		DDA3937_RS00460	0.26	+1.3
109,504	+		DDA3937_RS00460	0.26	+0.2
109,504	+		DDA3937_RS00460	0.26	+0.6
109,505	-		DDA3937_RS00460	0.26	-0.5
109,505	-		DDA3937_RS00460	0.26	+0.3
109,515	+		DDA3937_RS00460	0.27	+1.1
109,561	+		DDA3937_RS00460	0.30	+1.0
109,561	+		DDA3937_RS00460	0.30	-1.0
109,561	+		DDA3937_RS00460	0.30	+1.0
109,561	+		DDA3937_RS00460	0.30	-1.1
109,561	+		DDA3937_RS00460	0.30	+2.7
109,561	+		DDA3937_RS00460	0.30	-1.1
109,561	+		DDA3937_RS00460	0.30	-0.3
109,561	+		DDA3937_RS00460	0.30	-0.6
109,561	+		DDA3937_RS00460	0.30	+0.5
109,562	-		DDA3937_RS00460	0.30	+0.2
109,562	-		DDA3937_RS00460	0.30	+0.5
109,562	-		DDA3937_RS00460	0.30	-2.3
109,562	-		DDA3937_RS00460	0.30	-3.3
109,562	-		DDA3937_RS00460	0.30	-3.1
109,562	-		DDA3937_RS00460	0.30	+0.6
109,562	-		DDA3937_RS00460	0.30	+0.4
109,562	-		DDA3937_RS00460	0.30	-2.3
109,562	-		DDA3937_RS00460	0.30	-0.5
109,564	-		DDA3937_RS00460	0.30	-1.2
109,564	-		DDA3937_RS00460	0.30	-0.2
109,732	+		DDA3937_RS00460	0.40	+1.1
109,733	-		DDA3937_RS00460	0.41	-2.3
109,756	+		DDA3937_RS00460	0.42	-1.9
109,756	+		DDA3937_RS00460	0.42	-1.9
109,757	-		DDA3937_RS00460	0.42	-3.2
109,757	-		DDA3937_RS00460	0.42	-1.7
109,960	+		DDA3937_RS00460	0.55	-2.4
110,113	+		DDA3937_RS00460	0.64	-0.4
110,134	+		DDA3937_RS00460	0.65	-1.0
110,134	+		DDA3937_RS00460	0.65	-2.4
110,140	+		DDA3937_RS00460	0.66	-2.3
110,233	+		DDA3937_RS00460	0.72	-2.0
110,234	-		DDA3937_RS00460	0.72	+0.2
110,314	+		DDA3937_RS00460	0.77	+1.5
110,314	+		DDA3937_RS00460	0.77	+0.4
110,314	+		DDA3937_RS00460	0.77	-2.8
110,314	+		DDA3937_RS00460	0.77	+1.2
110,314	+		DDA3937_RS00460	0.77	+0.9
110,314	+		DDA3937_RS00460	0.77	-0.6
110,315	-		DDA3937_RS00460	0.77	-2.6
110,330	-		DDA3937_RS00460	0.78	+2.9
110,456	-		DDA3937_RS00460	0.86	-2.3
110,456	-		DDA3937_RS00460	0.86	-0.8
110,470	+		DDA3937_RS00460	0.86	-0.4
110,470	+		DDA3937_RS00460	0.86	-2.0
110,470	+		DDA3937_RS00460	0.86	+0.3
110,470	+		DDA3937_RS00460	0.86	-1.4
110,470	+				+0.1
110,470	+		DDA3937_RS00460	0.86	-0.9
110,470	+		DDA3937_RS00460	0.86	-1.7
110,470	+		DDA3937_RS00460	0.86	+1.1
110,470	+		DDA3937_RS00460	0.86	-0.6
110,470	+		DDA3937_RS00460	0.86	-1.1
110,470	+		DDA3937_RS00460	0.86	-3.3
110,470	+		DDA3937_RS00460	0.86	+0.4
110,471	-		DDA3937_RS00460	0.86	-2.3
110,471	-		DDA3937_RS00460	0.86	-0.9
110,471	-		DDA3937_RS00460	0.86	+1.7
110,471	-		DDA3937_RS00460	0.86	+3.4
110,471	-		DDA3937_RS00460	0.86	-2.0
110,471	-		DDA3937_RS00460	0.86	+0.1
110,471	-		DDA3937_RS00460	0.86	-0.9
110,530	-				-0.3
110,539	+				-1.5
110,539	+				-1.2
110,540	-				-4.0
110,540	-				-0.9
110,605	+				+0.1
110,606	-				-3.4
110,636	-				-3.3
110,675	+				-0.6
110,675	+				-0.0
110,675	+				-1.0
110,675	+				-0.7
110,675	+				+0.2
110,675	+				+0.4
110,675	+				-0.8
110,675	+				-1.3
110,675	+				+1.0
110,675	+				+0.6
110,675	+				-1.4
110,675	+				-1.5
110,676	-				-1.9
110,676	-				-0.3
110,681	+				-0.1
110,681	+				-1.4
110,682	-				-1.1
110,682	-				+0.7
110,686	+				+0.2
110,686	+				+0.6
110,686	+				-0.1
110,686	+				-2.2
110,686	+				-2.9
110,686	+				+0.8
110,686	+				-1.3
110,686	+				-1.2
110,687	-				-0.1
110,687	-				-1.1
110,687	-				-1.7
110,690	+				+0.4
110,690	+				+1.1
110,690	+				-1.1
110,690	+				+1.0
110,690	+				-2.0
110,691	-				-0.0
110,691	-				-0.2
110,694	+				+1.9
110,694	+				+0.1
110,694	+				-1.1
110,694	+				-1.5
110,694	+				+1.2
110,695	-				+0.4
110,695	-				-0.4
110,695	-				-1.3
110,708	+				+0.9
110,709	-				+0.3
110,744	+				-3.1
110,796	+				+1.9
110,797	-				+2.4
110,797	-				-1.1
110,880	+				-0.0
110,880	+				-1.2
110,880	+				-2.1
110,880	+				-1.2
110,880	+				+1.4
110,880	+				+0.5
110,880	+				-0.4
110,880	+				+1.1
110,880	+				-0.1
110,881	-				-0.6
110,881	-				+0.9
110,881	-				-2.6
110,881	-				+0.1
110,882	+				-0.3
110,882	+				-1.6
110,882	+				+2.7
110,882	+				+0.6
110,882	+				-0.9
110,882	+				-3.1
110,882	+				+0.1
110,882	+				+0.3
110,882	+				+1.1
110,882	+				-0.6
110,882	+				+1.6
110,883	-				+1.1
110,883	-				+1.0
110,883	-				+0.1
110,883	-				-1.1
110,883	-				-1.5
110,883	-				-1.8
110,883	-				+0.0
110,883	-				-1.5
110,883	-				+0.8
110,883	-				-1.1
110,888	+				-2.9
110,888	+				+1.2
110,888	+				-1.8
110,888	+				+2.3
110,888	+				+1.0
110,888	+				-0.5
110,888	+				+0.9
110,888	+				+0.8
110,888	+				-0.0
110,888	+				+0.4
110,889	-				-0.5
110,889	-				-1.5
110,889	-				+0.4
110,889	-				-1.3
110,890	+				+1.3
110,890	+				+0.5
110,916	+				-0.3
110,930	+				-0.8
110,930	+				-0.9
110,931	-				-1.4
110,970	+				-3.4
110,973	+				+0.8
110,973	+				-0.3
110,973	+				-2.0
110,974	-				-1.1
110,974	-				+0.0
111,045	+		DDA3937_RS00465	0.13	-0.3
111,112	+		DDA3937_RS00465	0.19	-1.6
111,112	+		DDA3937_RS00465	0.19	+1.2
111,113	-		DDA3937_RS00465	0.19	+0.5
111,113	-		DDA3937_RS00465	0.19	+0.6
111,113	-		DDA3937_RS00465	0.19	+0.5
111,113	-		DDA3937_RS00465	0.19	+0.2
111,113	-		DDA3937_RS00465	0.19	-2.8
111,113	-		DDA3937_RS00465	0.19	+0.1
111,122	-		DDA3937_RS00465	0.20	+1.5
111,122	-		DDA3937_RS00465	0.20	+0.2
111,122	-		DDA3937_RS00465	0.20	-0.5
111,122	-		DDA3937_RS00465	0.20	+0.3
111,204	+		DDA3937_RS00465	0.28	-3.6
111,322	-		DDA3937_RS00465	0.40	+1.2
111,322	-		DDA3937_RS00465	0.40	-0.9
111,338	-		DDA3937_RS00465	0.41	-0.9
111,396	+		DDA3937_RS00465	0.47	+1.0
111,396	+		DDA3937_RS00465	0.47	+0.5
111,397	-		DDA3937_RS00465	0.47	-1.1
111,468	+		DDA3937_RS00465	0.54	-0.5
111,468	+		DDA3937_RS00465	0.54	+2.0
111,469	-		DDA3937_RS00465	0.54	-1.6
111,469	-		DDA3937_RS00465	0.54	+1.7
111,480	+		DDA3937_RS00465	0.55	-2.8
111,481	-		DDA3937_RS00465	0.55	-1.3
111,582	+		DDA3937_RS00465	0.65	+1.3
111,582	+		DDA3937_RS00465	0.65	+0.0
111,622	+		DDA3937_RS00465	0.69	-0.0
111,622	+		DDA3937_RS00465	0.69	-2.2
111,622	+		DDA3937_RS00465	0.69	-2.0
111,622	+		DDA3937_RS00465	0.69	-1.6
111,623	-		DDA3937_RS00465	0.69	-0.9
111,623	-		DDA3937_RS00465	0.69	+2.2
111,625	-		DDA3937_RS00465	0.69	-2.1
111,625	-		DDA3937_RS00465	0.69	-2.8