Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00295 and DDA3937_RS00300 are separated by 100 nucleotides DDA3937_RS00300 and DDA3937_RS00305 are separated by 53 nucleotides DDA3937_RS00305 and DDA3937_RS00310 overlap by 4 nucleotides
DDA3937_RS00295: DDA3937_RS00295 - ROK family transcriptional regulator, at 69,021 to 70,124
_RS00295
DDA3937_RS00300: DDA3937_RS00300 - extracellular solute-binding protein, at 70,225 to 71,595
_RS00300
DDA3937_RS00305: DDA3937_RS00305 - sugar ABC transporter permease, at 71,649 to 72,566
_RS00305
DDA3937_RS00310: DDA3937_RS00310 - carbohydrate ABC transporter permease, at 72,563 to 73,609
_RS00310
Position (kb) 70
71
72 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 69.233 kb on + strand, within DDA3937_RS00295 at 69.233 kb on + strand, within DDA3937_RS00295 at 69.234 kb on - strand, within DDA3937_RS00295 at 69.234 kb on - strand, within DDA3937_RS00295 at 69.234 kb on - strand, within DDA3937_RS00295 at 69.234 kb on - strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.235 kb on + strand, within DDA3937_RS00295 at 69.236 kb on - strand, within DDA3937_RS00295 at 69.236 kb on - strand, within DDA3937_RS00295 at 69.236 kb on - strand, within DDA3937_RS00295 at 69.236 kb on - strand, within DDA3937_RS00295 at 69.247 kb on + strand, within DDA3937_RS00295 at 69.248 kb on - strand, within DDA3937_RS00295 at 69.494 kb on + strand, within DDA3937_RS00295 at 69.495 kb on - strand, within DDA3937_RS00295 at 69.496 kb on + strand, within DDA3937_RS00295 at 69.496 kb on + strand, within DDA3937_RS00295 at 69.496 kb on + strand, within DDA3937_RS00295 at 69.496 kb on + strand, within DDA3937_RS00295 at 69.496 kb on + strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.497 kb on - strand, within DDA3937_RS00295 at 69.503 kb on - strand, within DDA3937_RS00295 at 69.624 kb on + strand, within DDA3937_RS00295 at 69.624 kb on + strand, within DDA3937_RS00295 at 69.624 kb on + strand, within DDA3937_RS00295 at 69.624 kb on + strand at 69.624 kb on + strand, within DDA3937_RS00295 at 69.841 kb on + strand, within DDA3937_RS00295 at 69.841 kb on + strand, within DDA3937_RS00295 at 69.841 kb on + strand, within DDA3937_RS00295 at 69.841 kb on + strand, within DDA3937_RS00295 at 69.895 kb on + strand, within DDA3937_RS00295 at 69.895 kb on + strand, within DDA3937_RS00295 at 69.895 kb on + strand, within DDA3937_RS00295 at 69.895 kb on + strand, within DDA3937_RS00295 at 69.896 kb on - strand, within DDA3937_RS00295 at 69.978 kb on + strand, within DDA3937_RS00295 at 69.978 kb on + strand, within DDA3937_RS00295 at 69.978 kb on + strand, within DDA3937_RS00295 at 69.979 kb on - strand, within DDA3937_RS00295 at 69.979 kb on - strand, within DDA3937_RS00295 at 70.180 kb on - strand at 70.185 kb on - strand at 70.185 kb on - strand at 70.189 kb on - strand at 70.189 kb on - strand at 70.209 kb on + strand at 70.209 kb on + strand at 70.259 kb on + strand at 70.332 kb on + strand at 70.332 kb on + strand at 70.332 kb on + strand at 70.332 kb on + strand at 70.561 kb on + strand, within DDA3937_RS00300 at 70.587 kb on + strand, within DDA3937_RS00300 at 70.606 kb on + strand, within DDA3937_RS00300 at 70.606 kb on + strand, within DDA3937_RS00300 at 70.607 kb on - strand, within DDA3937_RS00300 at 70.607 kb on - strand, within DDA3937_RS00300 at 70.645 kb on + strand, within DDA3937_RS00300 at 70.645 kb on + strand, within DDA3937_RS00300 at 70.660 kb on + strand, within DDA3937_RS00300 at 70.660 kb on + strand, within DDA3937_RS00300 at 70.660 kb on + strand, within DDA3937_RS00300 at 70.744 kb on - strand, within DDA3937_RS00300 at 70.820 kb on + strand, within DDA3937_RS00300 at 70.820 kb on + strand, within DDA3937_RS00300 at 70.821 kb on - strand, within DDA3937_RS00300 at 70.821 kb on - strand, within DDA3937_RS00300 at 70.876 kb on + strand, within DDA3937_RS00300 at 71.153 kb on - strand, within DDA3937_RS00300 at 71.153 kb on - strand, within DDA3937_RS00300 at 71.153 kb on - strand, within DDA3937_RS00300 at 71.233 kb on + strand, within DDA3937_RS00300 at 71.233 kb on + strand, within DDA3937_RS00300 at 71.257 kb on + strand, within DDA3937_RS00300 at 71.303 kb on - strand, within DDA3937_RS00300 at 71.305 kb on + strand, within DDA3937_RS00300 at 71.305 kb on + strand, within DDA3937_RS00300 at 71.305 kb on + strand, within DDA3937_RS00300 at 71.305 kb on + strand, within DDA3937_RS00300 at 71.306 kb on - strand, within DDA3937_RS00300 at 71.306 kb on - strand, within DDA3937_RS00300 at 71.346 kb on + strand, within DDA3937_RS00300 at 71.346 kb on + strand, within DDA3937_RS00300 at 71.346 kb on + strand, within DDA3937_RS00300 at 71.346 kb on + strand, within DDA3937_RS00300 at 71.347 kb on - strand, within DDA3937_RS00300 at 71.347 kb on - strand, within DDA3937_RS00300 at 71.347 kb on - strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.350 kb on + strand, within DDA3937_RS00300 at 71.351 kb on - strand, within DDA3937_RS00300 at 71.351 kb on - strand, within DDA3937_RS00300 at 71.351 kb on - strand, within DDA3937_RS00300 at 71.351 kb on - strand, within DDA3937_RS00300 at 71.351 kb on - strand, within DDA3937_RS00300 at 71.351 kb on - strand, within DDA3937_RS00300 at 71.351 kb on - strand, within DDA3937_RS00300 at 71.375 kb on - strand, within DDA3937_RS00300 at 71.375 kb on - strand, within DDA3937_RS00300 at 71.375 kb on - strand, within DDA3937_RS00300 at 71.375 kb on - strand, within DDA3937_RS00300 at 71.424 kb on + strand, within DDA3937_RS00300 at 71.425 kb on - strand, within DDA3937_RS00300 at 71.458 kb on + strand, within DDA3937_RS00300 at 71.460 kb on + strand at 71.649 kb on - strand at 71.798 kb on - strand, within DDA3937_RS00305 at 71.798 kb on - strand, within DDA3937_RS00305 at 71.798 kb on - strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.880 kb on + strand, within DDA3937_RS00305 at 71.881 kb on - strand, within DDA3937_RS00305 at 71.891 kb on + strand, within DDA3937_RS00305 at 72.019 kb on - strand, within DDA3937_RS00305 at 72.134 kb on - strand, within DDA3937_RS00305 at 72.207 kb on - strand, within DDA3937_RS00305 at 72.207 kb on - strand, within DDA3937_RS00305 at 72.318 kb on + strand, within DDA3937_RS00305 at 72.318 kb on + strand, within DDA3937_RS00305 at 72.319 kb on - strand, within DDA3937_RS00305 at 72.319 kb on - strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.345 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.351 kb on + strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.352 kb on - strand, within DDA3937_RS00305 at 72.384 kb on + strand, within DDA3937_RS00305 at 72.384 kb on + strand, within DDA3937_RS00305 at 72.399 kb on + strand, within DDA3937_RS00305 at 72.399 kb on + strand, within DDA3937_RS00305 at 72.399 kb on + strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.400 kb on - strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.408 kb on + strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.409 kb on - strand, within DDA3937_RS00305 at 72.410 kb on + strand, within DDA3937_RS00305 at 72.410 kb on + strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.411 kb on - strand, within DDA3937_RS00305 at 72.414 kb on + strand, within DDA3937_RS00305 at 72.414 kb on + strand, within DDA3937_RS00305 at 72.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 69,233 + DDA3937_RS00295 0.19 -1.3 69,233 + DDA3937_RS00295 0.19 -1.4 69,234 - DDA3937_RS00295 0.19 +0.1 69,234 - DDA3937_RS00295 0.19 -1.5 69,234 - DDA3937_RS00295 0.19 -0.3 69,234 - DDA3937_RS00295 0.19 -1.5 69,235 + DDA3937_RS00295 0.19 -2.9 69,235 + DDA3937_RS00295 0.19 +0.1 69,235 + DDA3937_RS00295 0.19 -1.7 69,235 + DDA3937_RS00295 0.19 -1.1 69,235 + DDA3937_RS00295 0.19 -2.2 69,235 + DDA3937_RS00295 0.19 -2.0 69,235 + DDA3937_RS00295 0.19 -2.4 69,235 + DDA3937_RS00295 0.19 -1.3 69,235 + DDA3937_RS00295 0.19 +0.6 69,235 + DDA3937_RS00295 0.19 +3.3 69,235 + DDA3937_RS00295 0.19 -2.1 69,236 - DDA3937_RS00295 0.19 -2.0 69,236 - DDA3937_RS00295 0.19 +1.8 69,236 - DDA3937_RS00295 0.19 -0.6 69,236 - DDA3937_RS00295 0.19 -0.3 69,247 + DDA3937_RS00295 0.20 +0.6 69,248 - DDA3937_RS00295 0.21 +0.8 69,494 + DDA3937_RS00295 0.43 -4.1 69,495 - DDA3937_RS00295 0.43 -1.2 69,496 + DDA3937_RS00295 0.43 -2.1 69,496 + DDA3937_RS00295 0.43 -1.1 69,496 + DDA3937_RS00295 0.43 +1.5 69,496 + DDA3937_RS00295 0.43 -1.6 69,496 + DDA3937_RS00295 0.43 +1.0 69,497 - DDA3937_RS00295 0.43 +3.0 69,497 - DDA3937_RS00295 0.43 -1.3 69,497 - DDA3937_RS00295 0.43 -0.1 69,497 - DDA3937_RS00295 0.43 +0.1 69,497 - DDA3937_RS00295 0.43 +0.1 69,497 - DDA3937_RS00295 0.43 +1.1 69,497 - DDA3937_RS00295 0.43 -1.6 69,497 - DDA3937_RS00295 0.43 -0.6 69,497 - DDA3937_RS00295 0.43 -0.3 69,497 - DDA3937_RS00295 0.43 +0.3 69,503 - DDA3937_RS00295 0.44 -2.0 69,624 + DDA3937_RS00295 0.55 -0.6 69,624 + DDA3937_RS00295 0.55 -0.3 69,624 + DDA3937_RS00295 0.55 -1.6 69,624 + -0.6 69,624 + DDA3937_RS00295 0.55 +2.4 69,841 + DDA3937_RS00295 0.74 -1.9 69,841 + DDA3937_RS00295 0.74 -0.3 69,841 + DDA3937_RS00295 0.74 +0.4 69,841 + DDA3937_RS00295 0.74 -1.6 69,895 + DDA3937_RS00295 0.79 +1.0 69,895 + DDA3937_RS00295 0.79 -3.5 69,895 + DDA3937_RS00295 0.79 +0.6 69,895 + DDA3937_RS00295 0.79 +1.8 69,896 - DDA3937_RS00295 0.79 -3.0 69,978 + DDA3937_RS00295 0.87 -0.8 69,978 + DDA3937_RS00295 0.87 +0.5 69,978 + DDA3937_RS00295 0.87 +0.7 69,979 - DDA3937_RS00295 0.87 -1.2 69,979 - DDA3937_RS00295 0.87 +2.7 70,180 - -1.6 70,185 - +1.4 70,185 - -0.7 70,189 - -3.6 70,189 - -0.0 70,209 + +1.7 70,209 + -0.2 70,259 + +2.8 70,332 + -2.6 70,332 + +1.0 70,332 + +1.2 70,332 + +0.4 70,561 + DDA3937_RS00300 0.25 -0.1 70,587 + DDA3937_RS00300 0.26 +0.9 70,606 + DDA3937_RS00300 0.28 +0.2 70,606 + DDA3937_RS00300 0.28 -2.3 70,607 - DDA3937_RS00300 0.28 +0.6 70,607 - DDA3937_RS00300 0.28 -1.8 70,645 + DDA3937_RS00300 0.31 -3.8 70,645 + DDA3937_RS00300 0.31 +5.1 70,660 + DDA3937_RS00300 0.32 -1.9 70,660 + DDA3937_RS00300 0.32 -2.6 70,660 + DDA3937_RS00300 0.32 -3.1 70,744 - DDA3937_RS00300 0.38 -0.1 70,820 + DDA3937_RS00300 0.43 -1.3 70,820 + DDA3937_RS00300 0.43 -1.8 70,821 - DDA3937_RS00300 0.43 +0.7 70,821 - DDA3937_RS00300 0.43 +1.2 70,876 + DDA3937_RS00300 0.47 -2.5 71,153 - DDA3937_RS00300 0.68 -1.9 71,153 - DDA3937_RS00300 0.68 -0.6 71,153 - DDA3937_RS00300 0.68 -0.3 71,233 + DDA3937_RS00300 0.74 -2.2 71,233 + DDA3937_RS00300 0.74 -1.3 71,257 + DDA3937_RS00300 0.75 -1.9 71,303 - DDA3937_RS00300 0.79 +1.8 71,305 + DDA3937_RS00300 0.79 +1.4 71,305 + DDA3937_RS00300 0.79 +0.5 71,305 + DDA3937_RS00300 0.79 +1.0 71,305 + DDA3937_RS00300 0.79 -2.6 71,306 - DDA3937_RS00300 0.79 -1.4 71,306 - DDA3937_RS00300 0.79 +0.5 71,346 + DDA3937_RS00300 0.82 -1.8 71,346 + DDA3937_RS00300 0.82 +0.5 71,346 + DDA3937_RS00300 0.82 -1.8 71,346 + DDA3937_RS00300 0.82 +0.3 71,347 - DDA3937_RS00300 0.82 +0.5 71,347 - DDA3937_RS00300 0.82 -0.5 71,347 - DDA3937_RS00300 0.82 +1.1 71,350 + DDA3937_RS00300 0.82 -0.5 71,350 + DDA3937_RS00300 0.82 -0.5 71,350 + DDA3937_RS00300 0.82 -4.6 71,350 + DDA3937_RS00300 0.82 -1.8 71,350 + DDA3937_RS00300 0.82 +2.4 71,350 + DDA3937_RS00300 0.82 -0.3 71,350 + DDA3937_RS00300 0.82 +0.1 71,350 + DDA3937_RS00300 0.82 -2.8 71,351 - DDA3937_RS00300 0.82 -0.2 71,351 - DDA3937_RS00300 0.82 +0.5 71,351 - DDA3937_RS00300 0.82 -1.1 71,351 - DDA3937_RS00300 0.82 +0.5 71,351 - DDA3937_RS00300 0.82 +3.5 71,351 - DDA3937_RS00300 0.82 +0.1 71,351 - DDA3937_RS00300 0.82 -0.6 71,375 - DDA3937_RS00300 0.84 -2.4 71,375 - DDA3937_RS00300 0.84 -0.9 71,375 - DDA3937_RS00300 0.84 -1.6 71,375 - DDA3937_RS00300 0.84 +1.7 71,424 + DDA3937_RS00300 0.87 -1.9 71,425 - DDA3937_RS00300 0.88 +0.8 71,458 + DDA3937_RS00300 0.90 -0.7 71,460 + -2.6 71,649 - -0.1 71,798 - DDA3937_RS00305 0.16 -0.9 71,798 - DDA3937_RS00305 0.16 -1.6 71,798 - DDA3937_RS00305 0.16 +0.9 71,880 + DDA3937_RS00305 0.25 -0.3 71,880 + DDA3937_RS00305 0.25 -0.9 71,880 + DDA3937_RS00305 0.25 +0.2 71,880 + DDA3937_RS00305 0.25 +1.4 71,880 + DDA3937_RS00305 0.25 -2.3 71,881 - DDA3937_RS00305 0.25 +1.2 71,891 + DDA3937_RS00305 0.26 -0.1 72,019 - DDA3937_RS00305 0.40 -2.6 72,134 - DDA3937_RS00305 0.53 -1.9 72,207 - DDA3937_RS00305 0.61 +1.6 72,207 - DDA3937_RS00305 0.61 -0.3 72,318 + DDA3937_RS00305 0.73 -0.9 72,318 + DDA3937_RS00305 0.73 +0.5 72,319 - DDA3937_RS00305 0.73 -2.3 72,319 - DDA3937_RS00305 0.73 -0.6 72,345 + DDA3937_RS00305 0.76 -1.8 72,345 + DDA3937_RS00305 0.76 -0.4 72,345 + DDA3937_RS00305 0.76 -1.5 72,345 + DDA3937_RS00305 0.76 -0.4 72,345 + DDA3937_RS00305 0.76 -3.2 72,351 + DDA3937_RS00305 0.76 -1.2 72,351 + DDA3937_RS00305 0.76 -0.9 72,351 + DDA3937_RS00305 0.76 -0.4 72,351 + DDA3937_RS00305 0.76 -1.3 72,352 - DDA3937_RS00305 0.77 -2.1 72,352 - DDA3937_RS00305 0.77 +1.7 72,352 - DDA3937_RS00305 0.77 -1.2 72,352 - DDA3937_RS00305 0.77 -0.3 72,352 - DDA3937_RS00305 0.77 -0.9 72,352 - DDA3937_RS00305 0.77 -2.6 72,352 - DDA3937_RS00305 0.77 -1.4 72,384 + DDA3937_RS00305 0.80 +0.6 72,384 + DDA3937_RS00305 0.80 -0.2 72,399 + DDA3937_RS00305 0.82 -0.1 72,399 + DDA3937_RS00305 0.82 -1.6 72,399 + DDA3937_RS00305 0.82 -0.9 72,400 - DDA3937_RS00305 0.82 +1.4 72,400 - DDA3937_RS00305 0.82 +0.4 72,400 - DDA3937_RS00305 0.82 +0.1 72,400 - DDA3937_RS00305 0.82 +0.5 72,400 - DDA3937_RS00305 0.82 -2.8 72,408 + DDA3937_RS00305 0.83 +0.3 72,408 + DDA3937_RS00305 0.83 -1.1 72,408 + DDA3937_RS00305 0.83 -0.3 72,408 + DDA3937_RS00305 0.83 -1.4 72,408 + DDA3937_RS00305 0.83 +0.9 72,408 + DDA3937_RS00305 0.83 +1.5 72,408 + DDA3937_RS00305 0.83 +0.2 72,409 - DDA3937_RS00305 0.83 -2.3 72,409 - DDA3937_RS00305 0.83 -1.9 72,409 - DDA3937_RS00305 0.83 -0.4 72,409 - DDA3937_RS00305 0.83 -1.3 72,410 + DDA3937_RS00305 0.83 -0.3 72,410 + DDA3937_RS00305 0.83 +0.8 72,411 - DDA3937_RS00305 0.83 -2.5 72,411 - DDA3937_RS00305 0.83 +0.4 72,411 - DDA3937_RS00305 0.83 -1.4 72,411 - DDA3937_RS00305 0.83 +0.0 72,411 - DDA3937_RS00305 0.83 +0.5 72,411 - DDA3937_RS00305 0.83 -1.3 72,414 + DDA3937_RS00305 0.83 -0.2 72,414 + DDA3937_RS00305 0.83 +0.7 72,537 - +1.7
Or see this region's nucleotide sequence