Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00230 and DDA3937_RS00235 are separated by 168 nucleotides DDA3937_RS00235 and DDA3937_RS00240 are separated by 118 nucleotides
DDA3937_RS00230: DDA3937_RS00230 - LysR family transcriptional regulator, at 54,672 to 55,562
_RS00230
DDA3937_RS00235: DDA3937_RS00235 - MFS transporter, at 55,731 to 56,900
_RS00235
DDA3937_RS00240: DDA3937_RS00240 - histidine-type phosphatase, at 57,019 to 58,296
_RS00240
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.013 kb on + strand, within DDA3937_RS00230 at 55.014 kb on - strand, within DDA3937_RS00230 at 55.014 kb on - strand, within DDA3937_RS00230 at 55.014 kb on - strand, within DDA3937_RS00230 at 55.183 kb on - strand, within DDA3937_RS00230 at 55.183 kb on - strand, within DDA3937_RS00230 at 55.183 kb on - strand, within DDA3937_RS00230 at 55.245 kb on + strand, within DDA3937_RS00230 at 55.245 kb on + strand, within DDA3937_RS00230 at 55.246 kb on - strand, within DDA3937_RS00230 at 55.328 kb on + strand, within DDA3937_RS00230 at 55.499 kb on - strand at 55.595 kb on + strand at 55.595 kb on + strand at 55.639 kb on - strand at 55.639 kb on - strand at 55.639 kb on - strand at 55.741 kb on + strand at 55.741 kb on + strand at 55.741 kb on + strand at 55.741 kb on + strand at 55.741 kb on + strand at 55.741 kb on + strand at 55.742 kb on - strand at 55.742 kb on - strand at 55.747 kb on - strand at 55.823 kb on + strand at 55.823 kb on + strand at 55.824 kb on - strand at 55.824 kb on - strand at 55.824 kb on - strand at 55.827 kb on + strand at 55.827 kb on + strand at 55.827 kb on + strand at 55.827 kb on + strand at 55.827 kb on + strand at 55.827 kb on + strand at 55.827 kb on + strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.828 kb on - strand at 55.830 kb on + strand at 55.831 kb on - strand at 55.831 kb on - strand at 55.831 kb on - strand at 55.917 kb on + strand, within DDA3937_RS00235 at 56.062 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.102 kb on - strand, within DDA3937_RS00235 at 56.291 kb on + strand, within DDA3937_RS00235 at 56.452 kb on - strand, within DDA3937_RS00235 at 56.452 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.719 kb on - strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.754 kb on - strand, within DDA3937_RS00235 at 56.754 kb on - strand, within DDA3937_RS00235 at 56.898 kb on + strand at 56.898 kb on + strand at 56.935 kb on + strand at 56.935 kb on + strand at 56.935 kb on + strand at 56.944 kb on + strand at 56.945 kb on - strand at 57.016 kb on + strand at 57.017 kb on - strand at 57.020 kb on + strand at 57.020 kb on + strand at 57.020 kb on + strand at 57.021 kb on - strand at 57.218 kb on + strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.288 kb on + strand, within DDA3937_RS00240 at 57.288 kb on + strand, within DDA3937_RS00240 at 57.371 kb on + strand, within DDA3937_RS00240 at 57.371 kb on + strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.420 kb on + strand, within DDA3937_RS00240 at 57.433 kb on + strand, within DDA3937_RS00240 at 57.469 kb on + strand, within DDA3937_RS00240 at 57.473 kb on + strand, within DDA3937_RS00240 at 57.473 kb on + strand, within DDA3937_RS00240 at 57.474 kb on - strand, within DDA3937_RS00240 at 57.474 kb on - strand, within DDA3937_RS00240 at 57.497 kb on + strand, within DDA3937_RS00240 at 57.590 kb on + strand, within DDA3937_RS00240 at 57.591 kb on - strand, within DDA3937_RS00240
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 55,013 + DDA3937_RS00230 0.38 +0.8 55,013 + DDA3937_RS00230 0.38 +2.0 55,013 + DDA3937_RS00230 0.38 -0.1 55,013 + DDA3937_RS00230 0.38 -0.9 55,013 + DDA3937_RS00230 0.38 +1.3 55,013 + DDA3937_RS00230 0.38 -1.2 55,014 - DDA3937_RS00230 0.38 +0.1 55,014 - DDA3937_RS00230 0.38 +0.6 55,014 - DDA3937_RS00230 0.38 -2.0 55,183 - DDA3937_RS00230 0.57 -0.6 55,183 - DDA3937_RS00230 0.57 +0.2 55,183 - DDA3937_RS00230 0.57 +1.3 55,245 + DDA3937_RS00230 0.64 +0.3 55,245 + DDA3937_RS00230 0.64 -1.5 55,246 - DDA3937_RS00230 0.64 -2.1 55,328 + DDA3937_RS00230 0.74 -1.5 55,499 - -2.8 55,595 + +0.9 55,595 + +0.7 55,639 - +0.6 55,639 - -0.3 55,639 - -2.8 55,741 + -2.6 55,741 + -1.9 55,741 + -0.1 55,741 + +1.3 55,741 + -1.1 55,741 + +1.7 55,742 - -0.8 55,742 - +0.5 55,747 - -0.1 55,823 + +0.3 55,823 + -1.3 55,824 - +1.1 55,824 - -0.3 55,824 - -0.4 55,827 + -0.2 55,827 + -0.7 55,827 + -3.3 55,827 + -0.3 55,827 + -0.6 55,827 + -1.7 55,827 + -3.1 55,828 - -0.1 55,828 - -0.3 55,828 - -2.2 55,828 - -0.5 55,828 - +1.5 55,828 - -2.0 55,828 - -0.6 55,828 - -1.0 55,828 - -0.8 55,830 + +2.4 55,831 - -1.7 55,831 - +4.6 55,831 - -1.8 55,917 + DDA3937_RS00235 0.16 -0.3 56,062 + DDA3937_RS00235 0.28 +3.0 56,101 + DDA3937_RS00235 0.32 -0.5 56,101 + DDA3937_RS00235 0.32 -1.0 56,101 + DDA3937_RS00235 0.32 +0.7 56,101 + DDA3937_RS00235 0.32 -0.3 56,102 - DDA3937_RS00235 0.32 -2.6 56,291 + DDA3937_RS00235 0.48 -0.7 56,452 - DDA3937_RS00235 0.62 +0.1 56,452 - DDA3937_RS00235 0.62 -2.3 56,666 - DDA3937_RS00235 0.80 -0.4 56,666 - DDA3937_RS00235 0.80 -1.6 56,666 - DDA3937_RS00235 0.80 -3.5 56,666 - DDA3937_RS00235 0.80 -0.1 56,718 + DDA3937_RS00235 0.84 +1.0 56,718 + DDA3937_RS00235 0.84 +0.0 56,718 + DDA3937_RS00235 0.84 -2.6 56,719 - DDA3937_RS00235 0.84 +0.8 56,753 + DDA3937_RS00235 0.87 -0.5 56,753 + DDA3937_RS00235 0.87 -1.3 56,753 + DDA3937_RS00235 0.87 -0.6 56,754 - DDA3937_RS00235 0.87 -2.4 56,754 - DDA3937_RS00235 0.87 +0.7 56,898 + +0.6 56,898 + +0.7 56,935 + -1.8 56,935 + +0.7 56,935 + -1.0 56,944 + -0.1 56,945 - -0.8 57,016 + +0.8 57,017 - -0.8 57,020 + -0.2 57,020 + -0.3 57,020 + -2.1 57,021 - +0.1 57,218 + DDA3937_RS00240 0.16 +1.3 57,219 - DDA3937_RS00240 0.16 +1.1 57,219 - DDA3937_RS00240 0.16 -0.0 57,219 - DDA3937_RS00240 0.16 +0.9 57,219 - DDA3937_RS00240 0.16 -0.0 57,219 - DDA3937_RS00240 0.16 -0.9 57,288 + DDA3937_RS00240 0.21 -1.1 57,288 + DDA3937_RS00240 0.21 -0.9 57,371 + DDA3937_RS00240 0.28 -1.1 57,371 + DDA3937_RS00240 0.28 -0.4 57,372 - DDA3937_RS00240 0.28 -0.9 57,372 - DDA3937_RS00240 0.28 -1.6 57,372 - DDA3937_RS00240 0.28 -1.8 57,372 - DDA3937_RS00240 0.28 -1.4 57,420 + DDA3937_RS00240 0.31 +0.6 57,433 + DDA3937_RS00240 0.32 -1.4 57,469 + DDA3937_RS00240 0.35 -0.9 57,473 + DDA3937_RS00240 0.36 +1.1 57,473 + DDA3937_RS00240 0.36 +1.2 57,474 - DDA3937_RS00240 0.36 -1.8 57,474 - DDA3937_RS00240 0.36 -0.7 57,497 + DDA3937_RS00240 0.37 +2.4 57,590 + DDA3937_RS00240 0.45 +1.1 57,591 - DDA3937_RS00240 0.45 +0.5
Or see this region's nucleotide sequence