Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS22485 and DDA3937_RS22490 are separated by 81 nucleotides DDA3937_RS22490 and DDA3937_RS23355 are separated by 318 nucleotides DDA3937_RS23355 and DDA3937_RS18870 overlap by 4 nucleotides DDA3937_RS18870 and DDA3937_RS18875 overlap by 14 nucleotides
DDA3937_RS22485: DDA3937_RS22485 - hypothetical protein, at 4,309,385 to 4,309,789
_RS22485
DDA3937_RS22490: DDA3937_RS22490 - Hcp family type VI secretion system effector, at 4,309,871 to 4,310,350
_RS22490
DDA3937_RS23355: DDA3937_RS23355 - hypothetical protein, at 4,310,669 to 4,311,031
_RS23355
DDA3937_RS18870: DDA3937_RS18870 - nitrogen fixation protein NifX, at 4,311,028 to 4,311,495
_RS18870
DDA3937_RS18875: DDA3937_RS18875 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 4,311,482 to 4,312,867
_RS18875
Position (kb) 4310
4311
4312 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4309.697 kb on + strand, within DDA3937_RS22485 at 4309.893 kb on - strand at 4309.895 kb on - strand at 4309.895 kb on - strand at 4309.897 kb on + strand at 4309.897 kb on + strand at 4309.897 kb on + strand at 4309.898 kb on - strand at 4309.898 kb on - strand at 4309.899 kb on + strand at 4309.899 kb on + strand at 4309.900 kb on - strand at 4309.900 kb on - strand at 4309.934 kb on + strand, within DDA3937_RS22490 at 4309.934 kb on + strand, within DDA3937_RS22490 at 4309.934 kb on + strand, within DDA3937_RS22490 at 4309.934 kb on + strand, within DDA3937_RS22490 at 4309.935 kb on - strand, within DDA3937_RS22490 at 4309.935 kb on - strand, within DDA3937_RS22490 at 4309.936 kb on + strand, within DDA3937_RS22490 at 4309.936 kb on + strand, within DDA3937_RS22490 at 4309.936 kb on + strand, within DDA3937_RS22490 at 4309.937 kb on - strand, within DDA3937_RS22490 at 4309.937 kb on - strand, within DDA3937_RS22490 at 4309.942 kb on + strand, within DDA3937_RS22490 at 4309.943 kb on - strand, within DDA3937_RS22490 at 4309.944 kb on + strand, within DDA3937_RS22490 at 4309.944 kb on + strand, within DDA3937_RS22490 at 4309.958 kb on - strand at 4309.958 kb on - strand, within DDA3937_RS22490 at 4309.958 kb on - strand, within DDA3937_RS22490 at 4309.958 kb on - strand, within DDA3937_RS22490 at 4309.965 kb on + strand, within DDA3937_RS22490 at 4309.982 kb on - strand, within DDA3937_RS22490 at 4310.061 kb on - strand, within DDA3937_RS22490 at 4310.189 kb on + strand, within DDA3937_RS22490 at 4310.213 kb on - strand, within DDA3937_RS22490 at 4310.213 kb on - strand, within DDA3937_RS22490 at 4310.213 kb on - strand, within DDA3937_RS22490 at 4310.228 kb on + strand, within DDA3937_RS22490 at 4310.389 kb on - strand at 4310.411 kb on - strand at 4310.458 kb on + strand at 4310.498 kb on + strand at 4310.498 kb on + strand at 4310.503 kb on - strand at 4310.521 kb on - strand at 4310.535 kb on + strand at 4310.555 kb on + strand at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.734 kb on + strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.735 kb on - strand, within DDA3937_RS23355 at 4310.738 kb on + strand, within DDA3937_RS23355 at 4310.739 kb on - strand, within DDA3937_RS23355 at 4310.739 kb on - strand, within DDA3937_RS23355 at 4310.800 kb on + strand, within DDA3937_RS23355 at 4310.848 kb on + strand, within DDA3937_RS23355 at 4310.848 kb on + strand, within DDA3937_RS23355 at 4310.849 kb on - strand, within DDA3937_RS23355 at 4311.014 kb on + strand at 4311.014 kb on + strand at 4311.014 kb on + strand at 4311.014 kb on + strand at 4311.014 kb on + strand at 4311.014 kb on + strand at 4311.014 kb on + strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.015 kb on - strand at 4311.018 kb on + strand at 4311.018 kb on + strand at 4311.018 kb on + strand at 4311.018 kb on + strand at 4311.151 kb on + strand, within DDA3937_RS18870 at 4311.151 kb on + strand, within DDA3937_RS18870 at 4311.151 kb on + strand, within DDA3937_RS18870 at 4311.151 kb on + strand, within DDA3937_RS18870 at 4311.151 kb on + strand, within DDA3937_RS18870 at 4311.151 kb on + strand, within DDA3937_RS18870 at 4311.152 kb on - strand, within DDA3937_RS18870 at 4311.152 kb on - strand, within DDA3937_RS18870 at 4311.248 kb on + strand, within DDA3937_RS18870 at 4311.249 kb on - strand, within DDA3937_RS18870 at 4311.249 kb on - strand, within DDA3937_RS18870 at 4311.249 kb on - strand, within DDA3937_RS18870 at 4311.483 kb on + strand at 4311.483 kb on + strand at 4311.484 kb on - strand at 4311.486 kb on + strand at 4311.486 kb on + strand at 4311.486 kb on + strand at 4311.486 kb on + strand at 4311.486 kb on + strand at 4311.486 kb on + strand at 4311.486 kb on + strand at 4311.487 kb on - strand at 4311.487 kb on - strand at 4311.487 kb on - strand at 4311.487 kb on - strand at 4311.621 kb on + strand, within DDA3937_RS18875 at 4311.622 kb on - strand, within DDA3937_RS18875 at 4311.622 kb on - strand, within DDA3937_RS18875 at 4311.622 kb on - strand, within DDA3937_RS18875
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,309,697 + DDA3937_RS22485 0.77 -0.2 4,309,893 - -2.1 4,309,895 - -0.5 4,309,895 - -0.4 4,309,897 + -0.8 4,309,897 + -1.2 4,309,897 + -0.7 4,309,898 - +1.2 4,309,898 - +0.7 4,309,899 + +0.9 4,309,899 + -1.1 4,309,900 - -0.1 4,309,900 - -0.5 4,309,934 + DDA3937_RS22490 0.13 +0.2 4,309,934 + DDA3937_RS22490 0.13 +0.2 4,309,934 + DDA3937_RS22490 0.13 -0.9 4,309,934 + DDA3937_RS22490 0.13 +0.6 4,309,935 - DDA3937_RS22490 0.13 +0.2 4,309,935 - DDA3937_RS22490 0.13 -0.0 4,309,936 + DDA3937_RS22490 0.14 -0.1 4,309,936 + DDA3937_RS22490 0.14 +0.5 4,309,936 + DDA3937_RS22490 0.14 -1.3 4,309,937 - DDA3937_RS22490 0.14 -0.4 4,309,937 - DDA3937_RS22490 0.14 +1.9 4,309,942 + DDA3937_RS22490 0.15 +0.6 4,309,943 - DDA3937_RS22490 0.15 +0.2 4,309,944 + DDA3937_RS22490 0.15 +0.0 4,309,944 + DDA3937_RS22490 0.15 -1.2 4,309,958 - +1.2 4,309,958 - DDA3937_RS22490 0.18 +0.2 4,309,958 - DDA3937_RS22490 0.18 +0.5 4,309,958 - DDA3937_RS22490 0.18 -0.7 4,309,965 + DDA3937_RS22490 0.20 -0.1 4,309,982 - DDA3937_RS22490 0.23 +0.1 4,310,061 - DDA3937_RS22490 0.40 -0.0 4,310,189 + DDA3937_RS22490 0.66 -1.1 4,310,213 - DDA3937_RS22490 0.71 -0.4 4,310,213 - DDA3937_RS22490 0.71 +0.1 4,310,213 - DDA3937_RS22490 0.71 +1.2 4,310,228 + DDA3937_RS22490 0.74 +0.6 4,310,389 - -0.4 4,310,411 - -0.2 4,310,458 + -1.1 4,310,498 + +0.2 4,310,498 + -0.3 4,310,503 - -0.4 4,310,521 - -0.6 4,310,535 + -0.0 4,310,555 + +0.8 4,310,734 + DDA3937_RS23355 0.18 +0.3 4,310,734 + DDA3937_RS23355 0.18 +0.9 4,310,734 + DDA3937_RS23355 0.18 -0.5 4,310,734 + DDA3937_RS23355 0.18 -0.1 4,310,734 + DDA3937_RS23355 0.18 -0.6 4,310,734 + DDA3937_RS23355 0.18 -0.5 4,310,734 + DDA3937_RS23355 0.18 -0.0 4,310,734 + DDA3937_RS23355 0.18 -0.7 4,310,734 + DDA3937_RS23355 0.18 -0.6 4,310,734 + DDA3937_RS23355 0.18 -1.3 4,310,734 + DDA3937_RS23355 0.18 +0.0 4,310,734 + DDA3937_RS23355 0.18 -0.8 4,310,735 - DDA3937_RS23355 0.18 -1.8 4,310,735 - DDA3937_RS23355 0.18 -1.0 4,310,735 - DDA3937_RS23355 0.18 +0.1 4,310,735 - DDA3937_RS23355 0.18 -0.4 4,310,735 - DDA3937_RS23355 0.18 -1.1 4,310,735 - DDA3937_RS23355 0.18 -0.4 4,310,735 - DDA3937_RS23355 0.18 +0.2 4,310,735 - DDA3937_RS23355 0.18 -0.2 4,310,735 - DDA3937_RS23355 0.18 -0.0 4,310,735 - DDA3937_RS23355 0.18 -1.4 4,310,735 - DDA3937_RS23355 0.18 -0.3 4,310,738 + DDA3937_RS23355 0.19 -1.6 4,310,739 - DDA3937_RS23355 0.19 -1.6 4,310,739 - DDA3937_RS23355 0.19 -2.0 4,310,800 + DDA3937_RS23355 0.36 +0.6 4,310,848 + DDA3937_RS23355 0.49 -1.3 4,310,848 + DDA3937_RS23355 0.49 -0.2 4,310,849 - DDA3937_RS23355 0.50 +1.4 4,311,014 + -0.6 4,311,014 + +0.6 4,311,014 + +0.0 4,311,014 + -0.4 4,311,014 + +1.1 4,311,014 + +0.4 4,311,014 + +0.0 4,311,015 - +0.4 4,311,015 - +0.4 4,311,015 - -0.2 4,311,015 - -0.1 4,311,015 - -0.3 4,311,015 - -0.3 4,311,015 - +0.7 4,311,015 - -1.1 4,311,015 - -0.5 4,311,015 - -0.4 4,311,018 + -0.9 4,311,018 + +0.5 4,311,018 + +0.2 4,311,018 + -2.1 4,311,151 + DDA3937_RS18870 0.26 +0.8 4,311,151 + DDA3937_RS18870 0.26 -0.2 4,311,151 + DDA3937_RS18870 0.26 +0.8 4,311,151 + DDA3937_RS18870 0.26 -0.3 4,311,151 + DDA3937_RS18870 0.26 -0.5 4,311,151 + DDA3937_RS18870 0.26 -1.0 4,311,152 - DDA3937_RS18870 0.26 +0.6 4,311,152 - DDA3937_RS18870 0.26 -0.5 4,311,248 + DDA3937_RS18870 0.47 +0.1 4,311,249 - DDA3937_RS18870 0.47 -0.6 4,311,249 - DDA3937_RS18870 0.47 -1.5 4,311,249 - DDA3937_RS18870 0.47 -0.3 4,311,483 + +0.2 4,311,483 + +1.2 4,311,484 - -0.2 4,311,486 + -0.2 4,311,486 + -0.0 4,311,486 + -0.6 4,311,486 + +0.9 4,311,486 + +0.2 4,311,486 + -0.4 4,311,486 + -0.2 4,311,487 - -1.2 4,311,487 - -2.4 4,311,487 - -0.4 4,311,487 - -0.4 4,311,621 + DDA3937_RS18875 0.10 -0.6 4,311,622 - DDA3937_RS18875 0.10 -0.9 4,311,622 - DDA3937_RS18875 0.10 +0.2 4,311,622 - DDA3937_RS18875 0.10 +0.7
Or see this region's nucleotide sequence