Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04050 and DDA3937_RS04055 overlap by 4 nucleotides DDA3937_RS04055 and DDA3937_RS21905 overlap by 1 nucleotides DDA3937_RS21905 and DDA3937_RS04065 are separated by 637 nucleotides
DDA3937_RS04050: DDA3937_RS04050 - AAA family ATPase, at 902,452 to 903,081
_RS04050
DDA3937_RS04055: DDA3937_RS04055 - hypothetical protein, at 903,078 to 903,527
_RS04055
DDA3937_RS21905: DDA3937_RS21905 - restriction endonuclease, at 903,527 to 904,039
_RS21905
DDA3937_RS04065: DDA3937_RS04065 - H-NS histone family protein, at 904,677 to 905,078
_RS04065
Position (kb) 903
904
905 Strain fitness (log2 ratio) -2
-1
0
1 at 902.580 kb on + strand, within DDA3937_RS04050 at 902.602 kb on - strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.730 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.781 kb on + strand, within DDA3937_RS04050 at 902.784 kb on - strand, within DDA3937_RS04050 at 902.826 kb on + strand, within DDA3937_RS04050 at 902.829 kb on + strand, within DDA3937_RS04050 at 902.899 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.972 kb on + strand, within DDA3937_RS04050 at 903.040 kb on - strand at 903.040 kb on - strand at 903.553 kb on - strand at 903.579 kb on + strand, within DDA3937_RS21905 at 903.582 kb on - strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.688 kb on - strand, within DDA3937_RS21905 at 903.696 kb on + strand, within DDA3937_RS21905 at 903.697 kb on - strand, within DDA3937_RS21905 at 903.724 kb on + strand, within DDA3937_RS21905 at 903.738 kb on + strand, within DDA3937_RS21905 at 903.751 kb on - strand, within DDA3937_RS21905 at 903.755 kb on - strand, within DDA3937_RS21905 at 903.802 kb on + strand, within DDA3937_RS21905 at 903.828 kb on + strand, within DDA3937_RS21905 at 903.843 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.921 kb on - strand, within DDA3937_RS21905 at 903.925 kb on + strand, within DDA3937_RS21905 at 903.927 kb on + strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.979 kb on - strand, within DDA3937_RS21905 at 904.070 kb on + strand at 904.133 kb on + strand at 904.134 kb on - strand at 904.145 kb on - strand at 904.151 kb on - strand at 904.226 kb on - strand at 904.293 kb on + strand at 904.324 kb on - strand at 904.339 kb on + strand at 904.339 kb on + strand at 904.340 kb on - strand at 904.343 kb on + strand at 904.382 kb on - strand at 904.382 kb on - strand at 904.414 kb on + strand at 904.444 kb on + strand at 904.558 kb on + strand at 904.558 kb on + strand at 904.558 kb on + strand at 904.579 kb on - strand at 904.650 kb on + strand at 904.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 902,580 + DDA3937_RS04050 0.20 -0.3 902,602 - DDA3937_RS04050 0.24 -1.1 902,622 + DDA3937_RS04050 0.27 -0.6 902,622 + DDA3937_RS04050 0.27 -0.9 902,730 - DDA3937_RS04050 0.44 +0.1 902,773 - DDA3937_RS04050 0.51 -1.3 902,773 - DDA3937_RS04050 0.51 +1.1 902,781 + DDA3937_RS04050 0.52 +0.7 902,784 - DDA3937_RS04050 0.53 -0.1 902,826 + DDA3937_RS04050 0.59 -0.9 902,829 + DDA3937_RS04050 0.60 +0.6 902,899 + DDA3937_RS04050 0.71 -0.1 902,912 + DDA3937_RS04050 0.73 -0.5 902,912 + DDA3937_RS04050 0.73 +0.1 902,912 + DDA3937_RS04050 0.73 +0.1 902,912 + DDA3937_RS04050 0.73 -0.9 902,972 + DDA3937_RS04050 0.83 -1.2 903,040 - +0.1 903,040 - -1.3 903,553 - -0.3 903,579 + DDA3937_RS21905 0.10 -1.3 903,582 - DDA3937_RS21905 0.11 -0.2 903,687 + DDA3937_RS21905 0.31 -1.8 903,687 + DDA3937_RS21905 0.31 -0.7 903,687 + DDA3937_RS21905 0.31 -1.7 903,688 - DDA3937_RS21905 0.31 -0.4 903,696 + DDA3937_RS21905 0.33 -0.2 903,697 - DDA3937_RS21905 0.33 -1.2 903,724 + DDA3937_RS21905 0.38 -0.9 903,738 + DDA3937_RS21905 0.41 -0.5 903,751 - DDA3937_RS21905 0.44 -1.0 903,755 - DDA3937_RS21905 0.44 +0.7 903,802 + DDA3937_RS21905 0.54 -0.5 903,828 + DDA3937_RS21905 0.59 +1.1 903,843 + DDA3937_RS21905 0.62 -0.9 903,885 + DDA3937_RS21905 0.70 +0.3 903,885 + DDA3937_RS21905 0.70 +0.3 903,921 - DDA3937_RS21905 0.77 +0.1 903,925 + DDA3937_RS21905 0.78 -0.2 903,927 + DDA3937_RS21905 0.78 -0.8 903,928 - DDA3937_RS21905 0.78 -2.3 903,928 - DDA3937_RS21905 0.78 +0.1 903,979 - DDA3937_RS21905 0.88 -0.7 904,070 + -0.1 904,133 + -0.5 904,134 - -0.3 904,145 - +0.3 904,151 - -1.7 904,226 - -1.4 904,293 + +0.2 904,324 - +0.1 904,339 + +0.1 904,339 + -0.0 904,340 - -0.9 904,343 + -0.4 904,382 - +0.2 904,382 - -1.3 904,414 + -1.5 904,444 + -2.5 904,558 + -2.3 904,558 + -0.3 904,558 + +0.3 904,579 - -1.1 904,650 + -1.9 904,651 - -1.4
Or see this region's nucleotide sequence