Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04430 and DDA3937_RS21675 are separated by 1 nucleotides DDA3937_RS21675 and DDA3937_RS04440 are separated by 38 nucleotides DDA3937_RS04440 and DDA3937_RS04445 are separated by 567 nucleotides
DDA3937_RS04430: DDA3937_RS04430 - Hcp family type VI secretion system effector, at 978,492 to 978,971
_RS04430
DDA3937_RS21675: DDA3937_RS21675 - DUF4225 domain-containing protein, at 978,973 to 979,806
_RS21675
DDA3937_RS04440: DDA3937_RS04440 - hypothetical protein, at 979,845 to 980,234
_RS04440
DDA3937_RS04445: DDA3937_RS04445 - MacB family efflux pump subunit, at 980,802 to 982,748
_RS04445
Position (kb) 978
979
980 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 978.001 kb on + strand at 978.001 kb on + strand at 978.001 kb on + strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.002 kb on - strand at 978.005 kb on + strand at 978.006 kb on - strand at 978.018 kb on + strand at 978.018 kb on + strand at 978.019 kb on - strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.050 kb on + strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.051 kb on - strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.086 kb on + strand at 978.087 kb on - strand at 978.087 kb on - strand at 978.088 kb on + strand at 978.088 kb on + strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.089 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.092 kb on - strand at 978.210 kb on + strand at 978.397 kb on - strand at 978.400 kb on + strand at 978.400 kb on + strand at 978.401 kb on - strand at 978.401 kb on - strand at 978.437 kb on - strand at 978.518 kb on + strand at 978.518 kb on + strand at 978.519 kb on - strand at 978.539 kb on + strand at 978.644 kb on - strand, within DDA3937_RS04430 at 978.648 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.659 kb on - strand, within DDA3937_RS04430 at 978.789 kb on + strand, within DDA3937_RS04430 at 978.943 kb on - strand at 978.945 kb on - strand at 978.962 kb on - strand at 979.084 kb on + strand, within DDA3937_RS21675 at 979.086 kb on + strand, within DDA3937_RS21675 at 979.098 kb on - strand, within DDA3937_RS21675 at 979.181 kb on + strand, within DDA3937_RS21675 at 979.249 kb on - strand, within DDA3937_RS21675 at 979.502 kb on - strand, within DDA3937_RS21675 at 979.786 kb on + strand at 979.795 kb on - strand at 979.858 kb on + strand at 980.413 kb on - strand at 980.422 kb on - strand at 980.429 kb on - strand at 980.434 kb on - strand at 980.493 kb on + strand at 980.494 kb on - strand at 980.498 kb on - strand at 980.498 kb on - strand at 980.590 kb on + strand at 980.593 kb on - strand at 980.617 kb on - strand at 980.647 kb on - strand at 980.656 kb on + strand at 980.657 kb on - strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.658 kb on + strand at 980.659 kb on - strand at 980.659 kb on - strand at 980.679 kb on - strand at 980.679 kb on - strand at 980.682 kb on + strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.683 kb on - strand at 980.694 kb on + strand at 980.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 978,001 + +0.0 978,001 + -1.4 978,001 + +1.0 978,002 - -1.1 978,002 - -1.5 978,002 - -1.6 978,002 - +0.3 978,005 + +1.3 978,006 - -0.8 978,018 + +0.1 978,018 + +1.7 978,019 - +0.0 978,050 + +0.4 978,050 + +1.6 978,050 + -0.2 978,050 + -1.4 978,050 + -0.2 978,051 - +0.3 978,051 - -0.3 978,051 - +0.0 978,051 - -0.6 978,051 - -1.2 978,051 - -0.1 978,051 - -0.3 978,086 + +0.0 978,086 + -1.3 978,086 + -0.2 978,087 - -1.8 978,087 - -0.1 978,088 + -1.5 978,088 + +0.2 978,089 - +0.4 978,089 - -0.7 978,089 - -0.7 978,089 - -1.0 978,092 - +0.4 978,092 - -0.6 978,092 - -0.4 978,210 + +0.7 978,397 - -0.6 978,400 + -0.4 978,400 + -0.9 978,401 - +0.1 978,401 - +0.5 978,437 - -0.7 978,518 + +0.0 978,518 + +0.6 978,519 - -0.6 978,539 + -0.5 978,644 - DDA3937_RS04430 0.32 -0.8 978,648 - DDA3937_RS04430 0.33 -0.7 978,659 - DDA3937_RS04430 0.35 -1.1 978,659 - DDA3937_RS04430 0.35 -1.5 978,789 + DDA3937_RS04430 0.62 -3.1 978,943 - -0.6 978,945 - -1.8 978,962 - +0.2 979,084 + DDA3937_RS21675 0.13 -1.2 979,086 + DDA3937_RS21675 0.14 -1.0 979,098 - DDA3937_RS21675 0.15 -3.1 979,181 + DDA3937_RS21675 0.25 +0.0 979,249 - DDA3937_RS21675 0.33 -1.6 979,502 - DDA3937_RS21675 0.63 -1.0 979,786 + +0.3 979,795 - +0.4 979,858 + -1.8 980,413 - +0.4 980,422 - -0.4 980,429 - +0.2 980,434 - +1.0 980,493 + +0.4 980,494 - -0.6 980,498 - +0.2 980,498 - -0.1 980,590 + +1.3 980,593 - -2.0 980,617 - +0.0 980,647 - -0.4 980,656 + -0.9 980,657 - -0.1 980,658 + -2.1 980,658 + -0.6 980,658 + +1.0 980,658 + -2.9 980,658 + -1.0 980,659 - -1.1 980,659 - +0.0 980,679 - -0.4 980,679 - -1.4 980,682 + +1.6 980,683 - +0.3 980,683 - +0.1 980,683 - -0.6 980,683 - +0.3 980,683 - +0.4 980,694 + +0.1 980,695 - +2.6
Or see this region's nucleotide sequence