Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19665 and DDA3937_RS19670 are separated by 44 nucleotides DDA3937_RS19670 and DDA3937_RS19675 are separated by 157 nucleotides
DDA3937_RS19665: DDA3937_RS19665 - maltodextrin phosphorylase, at 4,474,936 to 4,477,353
_RS19665
DDA3937_RS19670: DDA3937_RS19670 - DeoR/GlpR family transcriptional regulator, at 4,477,398 to 4,478,156
_RS19670
DDA3937_RS19675: DDA3937_RS19675 - rhomboid family intramembrane serine protease GlpG, at 4,478,314 to 4,479,138
_RS19675
Position (kb)
4477
4478
4479 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4476.426 kb on - strand, within DDA3937_RS19665 at 4476.506 kb on + strand, within DDA3937_RS19665 at 4476.541 kb on - strand, within DDA3937_RS19665 at 4476.541 kb on - strand, within DDA3937_RS19665 at 4476.611 kb on + strand, within DDA3937_RS19665 at 4476.612 kb on - strand, within DDA3937_RS19665 at 4476.612 kb on - strand, within DDA3937_RS19665 at 4476.839 kb on + strand, within DDA3937_RS19665 at 4476.840 kb on - strand, within DDA3937_RS19665 at 4476.840 kb on - strand, within DDA3937_RS19665 at 4476.912 kb on - strand, within DDA3937_RS19665 at 4476.918 kb on - strand, within DDA3937_RS19665 at 4477.085 kb on + strand, within DDA3937_RS19665 at 4477.085 kb on + strand, within DDA3937_RS19665 at 4477.085 kb on + strand, within DDA3937_RS19665 at 4477.148 kb on + strand at 4477.148 kb on + strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.416 kb on + strand at 4477.416 kb on + strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.459 kb on - strand at 4477.512 kb on - strand, within DDA3937_RS19670 at 4477.591 kb on - strand, within DDA3937_RS19670 at 4477.634 kb on + strand, within DDA3937_RS19670 at 4477.869 kb on - strand, within DDA3937_RS19670 at 4478.015 kb on + strand at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.016 kb on - strand, within DDA3937_RS19670 at 4478.016 kb on - strand, within DDA3937_RS19670 at 4478.257 kb on + strand at 4478.304 kb on + strand at 4478.304 kb on + strand at 4478.304 kb on + strand at 4478.335 kb on - strand at 4478.417 kb on + strand, within DDA3937_RS19675 at 4478.418 kb on - strand, within DDA3937_RS19675 at 4478.434 kb on + strand, within DDA3937_RS19675 at 4478.435 kb on - strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.511 kb on - strand, within DDA3937_RS19675 at 4478.526 kb on - strand, within DDA3937_RS19675 at 4478.552 kb on + strand, within DDA3937_RS19675 at 4478.552 kb on + strand, within DDA3937_RS19675 at 4478.603 kb on - strand, within DDA3937_RS19675 at 4478.660 kb on + strand, within DDA3937_RS19675 at 4478.814 kb on - strand, within DDA3937_RS19675 at 4478.882 kb on + strand, within DDA3937_RS19675 at 4479.027 kb on + strand, within DDA3937_RS19675 at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.083 kb on + strand at 4479.083 kb on + strand at 4479.083 kb on + strand at 4479.084 kb on - strand at 4479.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,476,426 - DDA3937_RS19665 0.62 -0.7 4,476,506 + DDA3937_RS19665 0.65 -0.3 4,476,541 - DDA3937_RS19665 0.66 -0.3 4,476,541 - DDA3937_RS19665 0.66 +0.9 4,476,611 + DDA3937_RS19665 0.69 +0.5 4,476,612 - DDA3937_RS19665 0.69 -0.6 4,476,612 - DDA3937_RS19665 0.69 -0.9 4,476,839 + DDA3937_RS19665 0.79 -0.9 4,476,840 - DDA3937_RS19665 0.79 +1.4 4,476,840 - DDA3937_RS19665 0.79 -1.6 4,476,912 - DDA3937_RS19665 0.82 -0.8 4,476,918 - DDA3937_RS19665 0.82 +0.1 4,477,085 + DDA3937_RS19665 0.89 +1.0 4,477,085 + DDA3937_RS19665 0.89 +0.1 4,477,085 + DDA3937_RS19665 0.89 +0.6 4,477,148 + -0.5 4,477,148 + -0.7 4,477,149 - -1.3 4,477,149 - -0.3 4,477,149 - -0.6 4,477,149 - +1.0 4,477,149 - +0.5 4,477,416 + +1.2 4,477,416 + -1.1 4,477,417 - -0.7 4,477,417 - -0.9 4,477,417 - -1.5 4,477,417 - -0.9 4,477,417 - -2.5 4,477,417 - -0.1 4,477,417 - -0.9 4,477,417 - -0.2 4,477,417 - -0.5 4,477,421 + -2.2 4,477,421 + +0.7 4,477,421 + +0.2 4,477,421 + -1.3 4,477,421 + -1.3 4,477,421 + -0.8 4,477,421 + +0.7 4,477,421 + -0.2 4,477,421 + -0.6 4,477,421 + -2.1 4,477,421 + -0.3 4,477,422 - +1.4 4,477,422 - -0.8 4,477,422 - -1.5 4,477,422 - -0.3 4,477,422 - -1.3 4,477,422 - -2.3 4,477,459 - -1.4 4,477,512 - DDA3937_RS19670 0.15 -0.1 4,477,591 - DDA3937_RS19670 0.25 -0.8 4,477,634 + DDA3937_RS19670 0.31 -0.3 4,477,869 - DDA3937_RS19670 0.62 -2.1 4,478,015 + -0.3 4,478,015 + DDA3937_RS19670 0.81 -0.6 4,478,015 + DDA3937_RS19670 0.81 -0.3 4,478,015 + DDA3937_RS19670 0.81 +0.4 4,478,016 - DDA3937_RS19670 0.81 -0.6 4,478,016 - DDA3937_RS19670 0.81 -1.8 4,478,257 + -0.1 4,478,304 + -0.3 4,478,304 + -0.8 4,478,304 + -0.8 4,478,335 - +0.0 4,478,417 + DDA3937_RS19675 0.12 -0.5 4,478,418 - DDA3937_RS19675 0.13 -0.5 4,478,434 + DDA3937_RS19675 0.15 -0.3 4,478,435 - DDA3937_RS19675 0.15 +0.4 4,478,510 + DDA3937_RS19675 0.24 -0.7 4,478,510 + DDA3937_RS19675 0.24 -1.1 4,478,510 + DDA3937_RS19675 0.24 -2.8 4,478,510 + DDA3937_RS19675 0.24 +1.1 4,478,511 - DDA3937_RS19675 0.24 -0.2 4,478,526 - DDA3937_RS19675 0.26 -0.3 4,478,552 + DDA3937_RS19675 0.29 -1.3 4,478,552 + DDA3937_RS19675 0.29 -0.2 4,478,603 - DDA3937_RS19675 0.35 +0.1 4,478,660 + DDA3937_RS19675 0.42 -0.4 4,478,814 - DDA3937_RS19675 0.61 -0.0 4,478,882 + DDA3937_RS19675 0.69 +0.2 4,479,027 + DDA3937_RS19675 0.86 +0.2 4,479,081 + -0.6 4,479,081 + -0.8 4,479,081 + -0.0 4,479,081 + -0.9 4,479,081 + -1.4 4,479,081 + -0.3 4,479,081 + -0.9 4,479,081 + -2.1 4,479,081 + -0.8 4,479,081 + +0.2 4,479,081 + -0.1 4,479,081 + +0.7 4,479,082 - -0.8 4,479,082 - -0.3 4,479,082 - +0.8 4,479,082 - +1.4 4,479,082 - +0.1 4,479,083 + +0.4 4,479,083 + -0.3 4,479,083 + -0.4 4,479,084 - +0.5 4,479,084 - +0.1
Or see this region's nucleotide sequence