Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18970 and DDA3937_RS18975 are separated by 12 nucleotides DDA3937_RS18975 and DDA3937_RS18980 are separated by 14 nucleotides DDA3937_RS18980 and DDA3937_RS18985 are separated by 156 nucleotides DDA3937_RS18985 and DDA3937_RS18990 are separated by 140 nucleotides DDA3937_RS18990 and DDA3937_RS18995 are separated by 155 nucleotides
DDA3937_RS18970: DDA3937_RS18970 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 4,336,606 to 4,337,340
_RS18970
DDA3937_RS18975: DDA3937_RS18975 - fumarate reductase subunit FrdC, at 4,337,353 to 4,337,748
_RS18975
DDA3937_RS18980: DDA3937_RS18980 - fumarate reductase subunit FrdD, at 4,337,763 to 4,338,119
_RS18980
DDA3937_RS18985: DDA3937_RS18985 - outer membrane lipoprotein Blc, at 4,338,276 to 4,338,815
_RS18985
DDA3937_RS18990: DDA3937_RS18990 - DMT family protein, at 4,338,956 to 4,339,309
_RS18990
DDA3937_RS18995: DDA3937_RS18995 - elongation factor P, at 4,339,465 to 4,340,031
_RS18995
Position (kb) 4338
4339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4337.290 kb on - strand at 4337.338 kb on + strand at 4337.339 kb on - strand at 4337.367 kb on + strand at 4337.368 kb on - strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.374 kb on + strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.375 kb on - strand at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.428 kb on + strand at 4337.428 kb on + strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.429 kb on - strand, within DDA3937_RS18975 at 4337.430 kb on + strand, within DDA3937_RS18975 at 4337.430 kb on + strand, within DDA3937_RS18975 at 4337.431 kb on - strand, within DDA3937_RS18975 at 4337.431 kb on - strand, within DDA3937_RS18975 at 4337.648 kb on + strand, within DDA3937_RS18975 at 4337.649 kb on - strand, within DDA3937_RS18975 at 4337.913 kb on + strand, within DDA3937_RS18980 at 4337.913 kb on + strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.914 kb on - strand, within DDA3937_RS18980 at 4337.939 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.063 kb on + strand, within DDA3937_RS18980 at 4338.117 kb on + strand at 4338.117 kb on + strand at 4338.117 kb on + strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.118 kb on - strand at 4338.165 kb on - strand at 4338.235 kb on - strand at 4338.240 kb on + strand at 4338.282 kb on + strand at 4338.282 kb on + strand at 4338.282 kb on + strand at 4338.283 kb on - strand at 4338.295 kb on + strand at 4338.296 kb on - strand at 4338.296 kb on - strand at 4338.387 kb on + strand, within DDA3937_RS18985 at 4338.387 kb on + strand, within DDA3937_RS18985 at 4338.388 kb on - strand, within DDA3937_RS18985 at 4338.390 kb on - strand, within DDA3937_RS18985 at 4338.403 kb on - strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.462 kb on + strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.463 kb on - strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.552 kb on + strand, within DDA3937_RS18985 at 4338.553 kb on - strand, within DDA3937_RS18985 at 4338.553 kb on - strand, within DDA3937_RS18985 at 4338.609 kb on + strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.619 kb on - strand, within DDA3937_RS18985 at 4338.621 kb on - strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.625 kb on + strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.626 kb on - strand, within DDA3937_RS18985 at 4338.645 kb on + strand, within DDA3937_RS18985 at 4338.681 kb on + strand, within DDA3937_RS18985 at 4338.681 kb on + strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.682 kb on - strand, within DDA3937_RS18985 at 4338.778 kb on + strand at 4338.779 kb on - strand at 4338.779 kb on - strand at 4338.814 kb on - strand at 4338.814 kb on - strand at 4338.814 kb on - strand at 4338.822 kb on + strand at 4338.870 kb on - strand at 4338.939 kb on + strand at 4338.939 kb on + strand at 4338.982 kb on + strand at 4338.982 kb on + strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4338.983 kb on - strand at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.021 kb on + strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.022 kb on - strand, within DDA3937_RS18990 at 4339.024 kb on - strand, within DDA3937_RS18990 at 4339.051 kb on + strand, within DDA3937_RS18990 at 4339.052 kb on - strand, within DDA3937_RS18990 at 4339.052 kb on - strand, within DDA3937_RS18990 at 4339.069 kb on + strand, within DDA3937_RS18990 at 4339.070 kb on - strand, within DDA3937_RS18990 at 4339.164 kb on + strand, within DDA3937_RS18990 at 4339.165 kb on - strand, within DDA3937_RS18990 at 4339.165 kb on - strand, within DDA3937_RS18990 at 4339.165 kb on - strand, within DDA3937_RS18990 at 4339.258 kb on + strand, within DDA3937_RS18990 at 4339.259 kb on - strand, within DDA3937_RS18990 at 4339.259 kb on - strand, within DDA3937_RS18990 at 4339.262 kb on + strand, within DDA3937_RS18990 at 4339.262 kb on + strand, within DDA3937_RS18990 at 4339.262 kb on + strand, within DDA3937_RS18990 at 4339.263 kb on - strand, within DDA3937_RS18990 at 4339.263 kb on - strand, within DDA3937_RS18990 at 4339.263 kb on - strand, within DDA3937_RS18990 at 4339.267 kb on + strand, within DDA3937_RS18990 at 4339.267 kb on + strand, within DDA3937_RS18990 at 4339.291 kb on + strand at 4339.294 kb on + strand at 4339.294 kb on + strand at 4339.295 kb on - strand at 4339.309 kb on + strand at 4339.339 kb on - strand at 4339.339 kb on - strand at 4339.341 kb on + strand at 4339.341 kb on + strand at 4339.341 kb on + strand at 4339.342 kb on - strand at 4339.342 kb on - strand at 4339.342 kb on - strand at 4339.342 kb on - strand at 4339.360 kb on + strand at 4339.361 kb on - strand at 4339.377 kb on + strand at 4339.377 kb on + strand at 4339.378 kb on - strand at 4339.378 kb on - strand at 4339.378 kb on - strand at 4339.378 kb on - strand at 4339.430 kb on - strand at 4339.450 kb on + strand at 4339.451 kb on - strand at 4339.466 kb on + strand at 4339.466 kb on + strand at 4339.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,337,290 - -0.6 4,337,338 + +0.2 4,337,339 - +0.1 4,337,367 + -0.3 4,337,368 - +0.8 4,337,374 + +0.9 4,337,374 + -0.5 4,337,374 + +0.3 4,337,374 + +1.2 4,337,374 + -0.6 4,337,374 + +0.2 4,337,374 + +0.7 4,337,375 - -0.8 4,337,375 - +0.1 4,337,375 - -0.9 4,337,375 - -2.1 4,337,375 - +0.8 4,337,428 + DDA3937_RS18975 0.19 +0.7 4,337,428 + DDA3937_RS18975 0.19 -0.4 4,337,428 + DDA3937_RS18975 0.19 -0.7 4,337,428 + DDA3937_RS18975 0.19 +0.6 4,337,428 + DDA3937_RS18975 0.19 -0.5 4,337,428 + DDA3937_RS18975 0.19 -0.1 4,337,428 + DDA3937_RS18975 0.19 -0.8 4,337,428 + DDA3937_RS18975 0.19 +0.2 4,337,428 + DDA3937_RS18975 0.19 +0.2 4,337,428 + DDA3937_RS18975 0.19 -2.5 4,337,428 + -0.8 4,337,428 + DDA3937_RS18975 0.19 +0.1 4,337,429 - DDA3937_RS18975 0.19 +0.1 4,337,429 - DDA3937_RS18975 0.19 -0.2 4,337,429 - DDA3937_RS18975 0.19 -1.8 4,337,429 - DDA3937_RS18975 0.19 +0.5 4,337,429 - DDA3937_RS18975 0.19 -0.4 4,337,430 + DDA3937_RS18975 0.19 +1.7 4,337,430 + DDA3937_RS18975 0.19 -0.0 4,337,431 - DDA3937_RS18975 0.20 -0.1 4,337,431 - DDA3937_RS18975 0.20 -0.6 4,337,648 + DDA3937_RS18975 0.74 -0.8 4,337,649 - DDA3937_RS18975 0.75 -0.4 4,337,913 + DDA3937_RS18980 0.42 +0.6 4,337,913 + DDA3937_RS18980 0.42 -1.6 4,337,914 - DDA3937_RS18980 0.42 -0.8 4,337,914 - DDA3937_RS18980 0.42 +0.3 4,337,914 - DDA3937_RS18980 0.42 +0.6 4,337,914 - DDA3937_RS18980 0.42 +0.6 4,337,939 + DDA3937_RS18980 0.49 -0.4 4,338,063 + DDA3937_RS18980 0.84 +0.2 4,338,063 + DDA3937_RS18980 0.84 -1.4 4,338,063 + DDA3937_RS18980 0.84 -0.7 4,338,117 + -0.1 4,338,117 + +0.2 4,338,117 + -0.6 4,338,118 - -0.5 4,338,118 - -0.2 4,338,118 - +0.7 4,338,118 - -0.2 4,338,165 - +0.5 4,338,235 - -0.1 4,338,240 + -0.4 4,338,282 + +0.1 4,338,282 + +0.4 4,338,282 + +0.2 4,338,283 - +0.0 4,338,295 + -1.5 4,338,296 - -0.5 4,338,296 - -0.0 4,338,387 + DDA3937_RS18985 0.21 +0.3 4,338,387 + DDA3937_RS18985 0.21 +0.7 4,338,388 - DDA3937_RS18985 0.21 +0.2 4,338,390 - DDA3937_RS18985 0.21 -0.1 4,338,403 - DDA3937_RS18985 0.24 +2.5 4,338,462 + DDA3937_RS18985 0.34 +0.8 4,338,462 + DDA3937_RS18985 0.34 -0.1 4,338,462 + DDA3937_RS18985 0.34 -1.2 4,338,462 + DDA3937_RS18985 0.34 +0.5 4,338,463 - DDA3937_RS18985 0.35 -0.9 4,338,463 - DDA3937_RS18985 0.35 +0.1 4,338,463 - DDA3937_RS18985 0.35 -0.2 4,338,463 - DDA3937_RS18985 0.35 +0.5 4,338,463 - DDA3937_RS18985 0.35 +0.8 4,338,463 - DDA3937_RS18985 0.35 +0.0 4,338,552 + DDA3937_RS18985 0.51 +0.7 4,338,552 + DDA3937_RS18985 0.51 +0.1 4,338,552 + DDA3937_RS18985 0.51 +1.8 4,338,552 + DDA3937_RS18985 0.51 +0.6 4,338,553 - DDA3937_RS18985 0.51 +0.6 4,338,553 - DDA3937_RS18985 0.51 -0.8 4,338,609 + DDA3937_RS18985 0.62 +0.1 4,338,619 - DDA3937_RS18985 0.64 -0.5 4,338,619 - DDA3937_RS18985 0.64 +1.0 4,338,619 - DDA3937_RS18985 0.64 -1.1 4,338,621 - DDA3937_RS18985 0.64 +0.7 4,338,625 + DDA3937_RS18985 0.65 +0.4 4,338,625 + DDA3937_RS18985 0.65 -0.0 4,338,625 + DDA3937_RS18985 0.65 -0.1 4,338,626 - DDA3937_RS18985 0.65 +0.1 4,338,626 - DDA3937_RS18985 0.65 -0.5 4,338,626 - +0.2 4,338,626 - DDA3937_RS18985 0.65 +0.5 4,338,626 - DDA3937_RS18985 0.65 +0.5 4,338,645 + DDA3937_RS18985 0.68 -0.0 4,338,681 + DDA3937_RS18985 0.75 -0.8 4,338,681 + DDA3937_RS18985 0.75 -0.4 4,338,682 - DDA3937_RS18985 0.75 -0.6 4,338,682 - DDA3937_RS18985 0.75 -2.2 4,338,682 - DDA3937_RS18985 0.75 +0.1 4,338,778 + -0.5 4,338,779 - +0.8 4,338,779 - +0.4 4,338,814 - -1.0 4,338,814 - -1.5 4,338,814 - -0.4 4,338,822 + -0.6 4,338,870 - -0.5 4,338,939 + +0.2 4,338,939 + +0.5 4,338,982 + -0.4 4,338,982 + +0.7 4,338,983 - +0.4 4,338,983 - -0.9 4,338,983 - +0.5 4,338,983 - -0.6 4,338,983 - +0.6 4,339,021 + DDA3937_RS18990 0.18 +0.8 4,339,021 + DDA3937_RS18990 0.18 +1.6 4,339,021 + DDA3937_RS18990 0.18 -0.0 4,339,021 + DDA3937_RS18990 0.18 -0.3 4,339,021 + DDA3937_RS18990 0.18 -0.4 4,339,022 - DDA3937_RS18990 0.19 -1.1 4,339,022 - DDA3937_RS18990 0.19 -1.1 4,339,022 - DDA3937_RS18990 0.19 +0.1 4,339,022 - DDA3937_RS18990 0.19 -0.5 4,339,022 - DDA3937_RS18990 0.19 -1.2 4,339,022 - DDA3937_RS18990 0.19 -0.2 4,339,022 - DDA3937_RS18990 0.19 -0.6 4,339,024 - DDA3937_RS18990 0.19 -0.3 4,339,051 + DDA3937_RS18990 0.27 -1.0 4,339,052 - DDA3937_RS18990 0.27 +0.3 4,339,052 - DDA3937_RS18990 0.27 -0.6 4,339,069 + DDA3937_RS18990 0.32 -0.3 4,339,070 - DDA3937_RS18990 0.32 -0.3 4,339,164 + DDA3937_RS18990 0.59 -1.2 4,339,165 - DDA3937_RS18990 0.59 -1.0 4,339,165 - DDA3937_RS18990 0.59 -0.4 4,339,165 - DDA3937_RS18990 0.59 +1.0 4,339,258 + DDA3937_RS18990 0.85 +1.8 4,339,259 - DDA3937_RS18990 0.86 -0.2 4,339,259 - DDA3937_RS18990 0.86 +0.4 4,339,262 + DDA3937_RS18990 0.86 -0.1 4,339,262 + DDA3937_RS18990 0.86 +1.1 4,339,262 + DDA3937_RS18990 0.86 +1.2 4,339,263 - DDA3937_RS18990 0.87 -2.2 4,339,263 - DDA3937_RS18990 0.87 -1.7 4,339,263 - DDA3937_RS18990 0.87 -1.3 4,339,267 + DDA3937_RS18990 0.88 +0.1 4,339,267 + DDA3937_RS18990 0.88 +0.2 4,339,291 + -0.3 4,339,294 + +0.5 4,339,294 + -0.4 4,339,295 - -0.4 4,339,309 + -0.4 4,339,339 - +1.1 4,339,339 - -0.1 4,339,341 + +0.2 4,339,341 + -0.8 4,339,341 + -1.9 4,339,342 - -1.1 4,339,342 - -0.5 4,339,342 - -0.3 4,339,342 - -0.1 4,339,360 + +0.2 4,339,361 - -0.4 4,339,377 + -0.1 4,339,377 + -0.4 4,339,378 - +0.4 4,339,378 - +0.1 4,339,378 - +0.1 4,339,378 - +0.2 4,339,430 - -0.4 4,339,450 + -1.2 4,339,451 - -0.4 4,339,466 + +0.7 4,339,466 + -0.2 4,339,466 + -0.6
Or see this region's nucleotide sequence