Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16795

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS16790 and DDA3937_RS16795 are separated by 115 nucleotidesDDA3937_RS16795 and DDA3937_RS16800 overlap by 4 nucleotides DDA3937_RS16790: DDA3937_RS16790 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,821,021 to 3,822,376 _RS16790 DDA3937_RS16795: DDA3937_RS16795 - YfiM family lipoprotein, at 3,822,492 to 3,822,815 _RS16795 DDA3937_RS16800: DDA3937_RS16800 - MFS transporter, at 3,822,812 to 3,824,110 _RS16800 Position (kb) 3822 3823Strain fitness (log2 ratio) -2 -1 0 1at 3822.375 kb on - strandat 3822.435 kb on + strandat 3822.435 kb on + strandat 3822.435 kb on + strandat 3822.436 kb on - strandat 3822.436 kb on - strandat 3822.436 kb on - strandat 3822.438 kb on + strandat 3822.438 kb on + strandat 3822.438 kb on + strandat 3822.471 kb on + strandat 3822.471 kb on + strandat 3822.472 kb on - strandat 3822.472 kb on - strandat 3822.472 kb on - strandat 3822.508 kb on + strandat 3822.509 kb on - strandat 3822.509 kb on - strandat 3822.509 kb on - strandat 3822.511 kb on + strandat 3822.512 kb on - strandat 3822.512 kb on - strandat 3822.711 kb on + strand, within DDA3937_RS16795at 3822.711 kb on + strand, within DDA3937_RS16795at 3822.731 kb on + strand, within DDA3937_RS16795at 3822.731 kb on + strand, within DDA3937_RS16795at 3822.732 kb on - strand, within DDA3937_RS16795at 3822.793 kb on + strandat 3822.888 kb on + strandat 3822.888 kb on + strandat 3822.888 kb on + strandat 3822.889 kb on - strandat 3822.939 kb on + strandat 3822.939 kb on + strandat 3822.940 kb on - strandat 3822.940 kb on - strandat 3822.940 kb on - strandat 3822.940 kb on - strandat 3822.940 kb on - strandat 3822.978 kb on + strand, within DDA3937_RS16800at 3822.978 kb on + strand, within DDA3937_RS16800at 3822.978 kb on + strand, within DDA3937_RS16800at 3822.978 kb on + strand, within DDA3937_RS16800at 3822.979 kb on - strand, within DDA3937_RS16800at 3822.979 kb on - strand, within DDA3937_RS16800at 3823.053 kb on + strand, within DDA3937_RS16800at 3823.053 kb on + strand, within DDA3937_RS16800at 3823.305 kb on + strand, within DDA3937_RS16800at 3823.305 kb on + strand, within DDA3937_RS16800at 3823.306 kb on - strand, within DDA3937_RS16800at 3823.315 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strandat 3823.317 kb on + strand, within DDA3937_RS16800at 3823.317 kb on + strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.318 kb on - strand, within DDA3937_RS16800at 3823.324 kb on + strand, within DDA3937_RS16800at 3823.324 kb on + strand, within DDA3937_RS16800at 3823.324 kb on + strand, within DDA3937_RS16800at 3823.325 kb on - strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strandat 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.326 kb on + strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.327 kb on - strand, within DDA3937_RS16800at 3823.330 kb on + strand, within DDA3937_RS16800at 3823.330 kb on + strand, within DDA3937_RS16800at 3823.330 kb on + strand, within DDA3937_RS16800at 3823.330 kb on + strand, within DDA3937_RS16800at 3823.331 kb on - strand, within DDA3937_RS16800at 3823.331 kb on - strand, within DDA3937_RS16800at 3823.331 kb on - strand, within DDA3937_RS16800at 3823.331 kb on - strand, within DDA3937_RS16800at 3823.331 kb on - strand, within DDA3937_RS16800at 3823.332 kb on + strand, within DDA3937_RS16800at 3823.332 kb on + strand, within DDA3937_RS16800at 3823.333 kb on - strand, within DDA3937_RS16800at 3823.333 kb on - strand, within DDA3937_RS16800at 3823.333 kb on - strand, within DDA3937_RS16800at 3823.333 kb on - strand, within DDA3937_RS16800at 3823.372 kb on + strand, within DDA3937_RS16800at 3823.372 kb on + strand, within DDA3937_RS16800at 3823.385 kb on - strand, within DDA3937_RS16800at 3823.502 kb on + strand, within DDA3937_RS16800at 3823.516 kb on + strand, within DDA3937_RS16800at 3823.532 kb on - strand, within DDA3937_RS16800at 3823.544 kb on - strand, within DDA3937_RS16800at 3823.546 kb on - strand, within DDA3937_RS16800at 3823.572 kb on - strand, within DDA3937_RS16800at 3823.572 kb on - strand, within DDA3937_RS16800at 3823.572 kb on - strand, within DDA3937_RS16800at 3823.572 kb on - strand, within DDA3937_RS16800at 3823.574 kb on + strand, within DDA3937_RS16800at 3823.575 kb on - strand, within DDA3937_RS16800at 3823.581 kb on - strand, within DDA3937_RS16800at 3823.614 kb on + strand, within DDA3937_RS16800at 3823.614 kb on + strand, within DDA3937_RS16800at 3823.614 kb on + strand, within DDA3937_RS16800at 3823.614 kb on + strand, within DDA3937_RS16800at 3823.614 kb on + strand, within DDA3937_RS16800at 3823.629 kb on + strand, within DDA3937_RS16800at 3823.629 kb on + strand, within DDA3937_RS16800at 3823.630 kb on - strand, within DDA3937_RS16800at 3823.630 kb on - strand, within DDA3937_RS16800at 3823.630 kb on - strand, within DDA3937_RS16800at 3823.639 kb on + strand, within DDA3937_RS16800at 3823.666 kb on + strand, within DDA3937_RS16800at 3823.667 kb on - strand, within DDA3937_RS16800at 3823.667 kb on - strand, within DDA3937_RS16800at 3823.667 kb on - strand, within DDA3937_RS16800at 3823.667 kb on - strand, within DDA3937_RS16800at 3823.668 kb on + strand, within DDA3937_RS16800at 3823.668 kb on + strand, within DDA3937_RS16800at 3823.668 kb on + strand, within DDA3937_RS16800at 3823.668 kb on + strand, within DDA3937_RS16800at 3823.669 kb on - strand, within DDA3937_RS16800at 3823.669 kb on - strand, within DDA3937_RS16800at 3823.669 kb on - strand, within DDA3937_RS16800at 3823.669 kb on - strand, within DDA3937_RS16800at 3823.669 kb on - strand, within DDA3937_RS16800at 3823.669 kb on - strand, within DDA3937_RS16800at 3823.669 kb on - strand, within DDA3937_RS16800at 3823.678 kb on + strand, within DDA3937_RS16800at 3823.679 kb on - strand, within DDA3937_RS16800at 3823.681 kb on + strand, within DDA3937_RS16800at 3823.681 kb on + strand, within DDA3937_RS16800at 3823.681 kb on + strand, within DDA3937_RS16800at 3823.681 kb on + strand, within DDA3937_RS16800at 3823.682 kb on - strand, within DDA3937_RS16800at 3823.682 kb on - strand, within DDA3937_RS16800at 3823.682 kb on - strand, within DDA3937_RS16800at 3823.724 kb on + strand, within DDA3937_RS16800at 3823.725 kb on - strand, within DDA3937_RS16800

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,822,375 - +1.0
3,822,435 + +0.5
3,822,435 + +0.2
3,822,435 + +1.0
3,822,436 - +0.3
3,822,436 - +0.5
3,822,436 - +0.0
3,822,438 + +0.0
3,822,438 + +0.1
3,822,438 + +0.1
3,822,471 + -0.4
3,822,471 + -0.8
3,822,472 - -1.0
3,822,472 - -0.2
3,822,472 - -0.4
3,822,508 + -0.2
3,822,509 - -1.4
3,822,509 - -1.5
3,822,509 - -0.2
3,822,511 + -0.5
3,822,512 - -1.0
3,822,512 - -0.5
3,822,711 + DDA3937_RS16795 0.68 -1.3
3,822,711 + DDA3937_RS16795 0.68 -0.3
3,822,731 + DDA3937_RS16795 0.74 +0.0
3,822,731 + DDA3937_RS16795 0.74 -0.1
3,822,732 - DDA3937_RS16795 0.74 +1.0
3,822,793 + -0.2
3,822,888 + -0.7
3,822,888 + -0.3
3,822,888 + -0.3
3,822,889 - -1.3
3,822,939 + -1.6
3,822,939 + -1.1
3,822,940 - -1.0
3,822,940 - -1.6
3,822,940 - -1.3
3,822,940 - -0.6
3,822,940 - +0.4
3,822,978 + DDA3937_RS16800 0.13 -1.0
3,822,978 + DDA3937_RS16800 0.13 +0.1
3,822,978 + DDA3937_RS16800 0.13 -0.2
3,822,978 + DDA3937_RS16800 0.13 -1.0
3,822,979 - DDA3937_RS16800 0.13 +0.1
3,822,979 - DDA3937_RS16800 0.13 -0.6
3,823,053 + DDA3937_RS16800 0.19 -1.8
3,823,053 + DDA3937_RS16800 0.19 -1.1
3,823,305 + DDA3937_RS16800 0.38 -0.8
3,823,305 + DDA3937_RS16800 0.38 -0.6
3,823,306 - DDA3937_RS16800 0.38 -0.6
3,823,315 + DDA3937_RS16800 0.39 -0.8
3,823,317 + DDA3937_RS16800 0.39 -1.1
3,823,317 + DDA3937_RS16800 0.39 +0.4
3,823,317 + DDA3937_RS16800 0.39 -0.6
3,823,317 + DDA3937_RS16800 0.39 -0.0
3,823,317 + DDA3937_RS16800 0.39 +0.8
3,823,317 + DDA3937_RS16800 0.39 +1.0
3,823,317 + DDA3937_RS16800 0.39 -0.2
3,823,317 + +0.4
3,823,317 + DDA3937_RS16800 0.39 +0.2
3,823,317 + DDA3937_RS16800 0.39 +1.0
3,823,318 - DDA3937_RS16800 0.39 +0.0
3,823,318 - DDA3937_RS16800 0.39 -0.2
3,823,318 - DDA3937_RS16800 0.39 -0.7
3,823,318 - DDA3937_RS16800 0.39 +0.7
3,823,318 - DDA3937_RS16800 0.39 -0.9
3,823,318 - DDA3937_RS16800 0.39 -0.3
3,823,318 - DDA3937_RS16800 0.39 +1.5
3,823,318 - DDA3937_RS16800 0.39 +1.1
3,823,318 - DDA3937_RS16800 0.39 +1.3
3,823,324 + DDA3937_RS16800 0.39 -0.0
3,823,324 + DDA3937_RS16800 0.39 -0.8
3,823,324 + DDA3937_RS16800 0.39 +1.0
3,823,325 - DDA3937_RS16800 0.39 -1.3
3,823,326 + DDA3937_RS16800 0.40 +1.3
3,823,326 + DDA3937_RS16800 0.40 -0.8
3,823,326 + DDA3937_RS16800 0.40 -0.6
3,823,326 + DDA3937_RS16800 0.40 +0.2
3,823,326 + DDA3937_RS16800 0.40 -0.6
3,823,326 + DDA3937_RS16800 0.40 -1.6
3,823,326 + DDA3937_RS16800 0.40 -0.8
3,823,326 + DDA3937_RS16800 0.40 -2.2
3,823,326 + DDA3937_RS16800 0.40 +0.2
3,823,326 + +0.4
3,823,326 + DDA3937_RS16800 0.40 +1.0
3,823,326 + DDA3937_RS16800 0.40 -0.1
3,823,326 + DDA3937_RS16800 0.40 -1.4
3,823,326 + DDA3937_RS16800 0.40 +0.4
3,823,327 - DDA3937_RS16800 0.40 +1.0
3,823,327 - DDA3937_RS16800 0.40 +0.3
3,823,327 - DDA3937_RS16800 0.40 -0.9
3,823,327 - DDA3937_RS16800 0.40 -0.4
3,823,327 - DDA3937_RS16800 0.40 +0.8
3,823,327 - DDA3937_RS16800 0.40 -2.0
3,823,327 - DDA3937_RS16800 0.40 -0.6
3,823,327 - DDA3937_RS16800 0.40 -0.0
3,823,327 - DDA3937_RS16800 0.40 +1.7
3,823,327 - DDA3937_RS16800 0.40 +0.2
3,823,330 + DDA3937_RS16800 0.40 -0.5
3,823,330 + DDA3937_RS16800 0.40 -0.1
3,823,330 + DDA3937_RS16800 0.40 -0.0
3,823,330 + DDA3937_RS16800 0.40 +0.0
3,823,331 - DDA3937_RS16800 0.40 -0.4
3,823,331 - DDA3937_RS16800 0.40 -0.5
3,823,331 - DDA3937_RS16800 0.40 +0.4
3,823,331 - DDA3937_RS16800 0.40 +1.0
3,823,331 - DDA3937_RS16800 0.40 -0.5
3,823,332 + DDA3937_RS16800 0.40 -0.2
3,823,332 + DDA3937_RS16800 0.40 +0.0
3,823,333 - DDA3937_RS16800 0.40 +0.0
3,823,333 - DDA3937_RS16800 0.40 -1.6
3,823,333 - DDA3937_RS16800 0.40 +0.4
3,823,333 - DDA3937_RS16800 0.40 +0.6
3,823,372 + DDA3937_RS16800 0.43 -0.2
3,823,372 + DDA3937_RS16800 0.43 -0.6
3,823,385 - DDA3937_RS16800 0.44 +0.0
3,823,502 + DDA3937_RS16800 0.53 +0.3
3,823,516 + DDA3937_RS16800 0.54 -1.3
3,823,532 - DDA3937_RS16800 0.55 -0.1
3,823,544 - DDA3937_RS16800 0.56 +0.7
3,823,546 - DDA3937_RS16800 0.57 +0.8
3,823,572 - DDA3937_RS16800 0.59 +0.4
3,823,572 - DDA3937_RS16800 0.59 -0.0
3,823,572 - DDA3937_RS16800 0.59 -1.8
3,823,572 - DDA3937_RS16800 0.59 +0.4
3,823,574 + DDA3937_RS16800 0.59 +0.5
3,823,575 - DDA3937_RS16800 0.59 +0.3
3,823,581 - DDA3937_RS16800 0.59 +0.6
3,823,614 + DDA3937_RS16800 0.62 -0.8
3,823,614 + DDA3937_RS16800 0.62 -2.0
3,823,614 + DDA3937_RS16800 0.62 -0.1
3,823,614 + DDA3937_RS16800 0.62 -0.6
3,823,614 + DDA3937_RS16800 0.62 +0.4
3,823,629 + DDA3937_RS16800 0.63 -0.3
3,823,629 + DDA3937_RS16800 0.63 +0.4
3,823,630 - DDA3937_RS16800 0.63 +0.2
3,823,630 - DDA3937_RS16800 0.63 -1.0
3,823,630 - DDA3937_RS16800 0.63 -0.1
3,823,639 + DDA3937_RS16800 0.64 -0.4
3,823,666 + DDA3937_RS16800 0.66 +1.0
3,823,667 - DDA3937_RS16800 0.66 -0.4
3,823,667 - DDA3937_RS16800 0.66 -2.1
3,823,667 - DDA3937_RS16800 0.66 -0.7
3,823,667 - DDA3937_RS16800 0.66 -0.2
3,823,668 + DDA3937_RS16800 0.66 +1.0
3,823,668 + DDA3937_RS16800 0.66 -0.9
3,823,668 + DDA3937_RS16800 0.66 -1.1
3,823,668 + DDA3937_RS16800 0.66 -1.1
3,823,669 - DDA3937_RS16800 0.66 -1.3
3,823,669 - DDA3937_RS16800 0.66 -0.5
3,823,669 - DDA3937_RS16800 0.66 -0.8
3,823,669 - DDA3937_RS16800 0.66 -1.3
3,823,669 - DDA3937_RS16800 0.66 -1.1
3,823,669 - DDA3937_RS16800 0.66 +0.0
3,823,669 - DDA3937_RS16800 0.66 -0.2
3,823,678 + DDA3937_RS16800 0.67 -1.8
3,823,679 - DDA3937_RS16800 0.67 -0.3
3,823,681 + DDA3937_RS16800 0.67 +1.0
3,823,681 + DDA3937_RS16800 0.67 -1.1
3,823,681 + DDA3937_RS16800 0.67 -0.7
3,823,681 + DDA3937_RS16800 0.67 -1.5
3,823,682 - DDA3937_RS16800 0.67 -1.3
3,823,682 - DDA3937_RS16800 0.67 +1.0
3,823,682 - DDA3937_RS16800 0.67 +0.1
3,823,724 + DDA3937_RS16800 0.70 +0.3
3,823,725 - DDA3937_RS16800 0.70 -0.3

Or see this region's nucleotide sequence