Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15915

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,639,356	+				+0.4
3,639,356	+				-2.1
3,639,357	-				-0.4
3,639,357	-				+0.1
3,639,378	+				+0.4
3,639,378	+				+0.2
3,639,378	+				-0.1
3,639,378	+				+0.9
3,639,378	+				-0.3
3,639,378	+				-0.0
3,639,379	-				-0.3
3,639,379	-				-0.0
3,639,379	-				-0.5
3,639,382	+				+0.4
3,639,383	-				-0.1
3,639,383	-				+1.0
3,639,383	-				-1.0
3,639,472	-		DDA3937_RS15910	0.20	+0.1
3,639,575	-		DDA3937_RS15910	0.33	+1.3
3,639,977	-		DDA3937_RS15910	0.83	+0.3
3,640,099	+				-0.2
3,640,100	-				-2.0
3,640,133	+				+0.1
3,640,134	-				+1.0
3,640,134	-				-0.3
3,640,134	-				-0.6
3,640,180	+				+0.7
3,640,181	-				+0.6
3,640,193	-				-0.5
3,640,207	-				+0.1
3,640,212	+				+1.0
3,640,212	+				+1.2
3,640,212	+				-0.0
3,640,213	-				+0.9
3,640,213	-				-0.7
3,640,257	+				-1.3
3,640,316	+				+0.7
3,640,317	-				+0.5
3,640,317	-				-0.6
3,640,317	-				-0.0
3,640,320	-				-1.5
3,640,320	-				+0.4
3,640,332	+				-0.3
3,640,343	+				+0.6
3,640,343	+				+0.7
3,640,344	-				+0.3
3,640,344	-				+2.0
3,640,344	-				-0.6
3,640,616	+		DDA3937_RS15915	0.11	-0.3
3,640,617	-		DDA3937_RS15915	0.11	+0.4
3,640,617	-		DDA3937_RS15915	0.11	+0.2
3,640,889	+		DDA3937_RS15915	0.22	-1.3
3,640,889	+		DDA3937_RS15915	0.22	-1.0
3,641,248	-		DDA3937_RS15915	0.36	-0.0
3,641,288	+		DDA3937_RS15915	0.38	-0.0
3,641,289	-		DDA3937_RS15915	0.38	-0.6
3,641,760	-		DDA3937_RS15915	0.57	+0.6
3,641,964	-		DDA3937_RS15915	0.65	-2.5
3,642,125	+		DDA3937_RS15915	0.71	-0.6
3,642,708	-				+0.1
3,642,720	-				+0.2
3,642,720	-				-0.4
3,642,732	-				-0.0
3,642,744	-				-2.0
3,642,744	-				-0.7
3,642,744	-				-0.1
3,642,804	+				-0.7
3,642,804	+				+1.7
3,642,805	-				-0.6
3,642,805	-				-0.0
3,642,805	-				+0.3
3,642,805	-				+0.5
3,642,820	-				-0.3
3,642,844	+				+0.7
3,642,844	+				+0.6
3,642,844	+				-1.7
3,642,844	+				+0.3
3,642,844	+				-0.4
3,642,845	-				+0.9
3,642,845	-				+0.2
3,642,901	+				-1.1
3,642,901	+				-1.2
3,642,949	+				+0.1
3,642,950	-				+1.0
3,642,950	-				-1.0
3,642,953	+				+0.6
3,642,962	-				-1.6
3,643,228	+		DDA3937_RS15920	0.11	+1.7
3,643,228	+		DDA3937_RS15920	0.11	+0.0
3,643,264	+		DDA3937_RS15920	0.13	+0.5
3,643,264	+		DDA3937_RS15920	0.13	-0.1
3,643,264	+		DDA3937_RS15920	0.13	-1.1
3,643,264	+		DDA3937_RS15920	0.13	-0.0
3,643,265	-		DDA3937_RS15920	0.13	+0.5
3,643,265	-		DDA3937_RS15920	0.13	+0.0
3,643,355	+		DDA3937_RS15920	0.16	+0.4
3,643,395	+		DDA3937_RS15920	0.18	-0.0
3,643,395	+		DDA3937_RS15920	0.18	+2.0
3,643,396	-		DDA3937_RS15920	0.18	+0.3
3,643,396	-		DDA3937_RS15920	0.18	-0.8
3,643,396	-		DDA3937_RS15920	0.18	+0.2
3,643,544	+		DDA3937_RS15920	0.24	+1.0
3,643,544	+		DDA3937_RS15920	0.24	-1.3
3,643,544	+		DDA3937_RS15920	0.24	-0.8
3,643,544	+		DDA3937_RS15920	0.24	-1.0
3,643,644	-		DDA3937_RS15920	0.28	+1.6
3,643,737	+		DDA3937_RS15920	0.32	+0.2