Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15280

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,507,339	+		DDA3937_RS15275	0.31	-0.1
3,507,340	-		DDA3937_RS15275	0.31	-0.4
3,507,383	+		DDA3937_RS15275	0.34	+0.7
3,507,694	+		DDA3937_RS15275	0.56	+0.1
3,507,694	+		DDA3937_RS15275	0.56	-1.9
3,507,739	+		DDA3937_RS15275	0.59	-0.8
3,507,786	-		DDA3937_RS15275	0.63	-0.5
3,507,981	+		DDA3937_RS15275	0.77	-0.4
3,507,982	-		DDA3937_RS15275	0.77	-0.6
3,508,009	+		DDA3937_RS15275	0.79	-0.5
3,508,010	-		DDA3937_RS15275	0.79	-0.1
3,508,030	+		DDA3937_RS15275	0.80	-0.6
3,508,030	+		DDA3937_RS15275	0.80	-2.8
3,508,030	+		DDA3937_RS15275	0.80	-0.9
3,508,030	+		DDA3937_RS15275	0.80	+1.0
3,508,030	+		DDA3937_RS15275	0.80	-0.1
3,508,115	-		DDA3937_RS15275	0.86	-0.1
3,508,148	-		DDA3937_RS15275	0.88	-1.4
3,508,205	+				+0.2
3,508,205	+				+0.3
3,508,205	+				+0.9
3,508,205	+				-0.3
3,508,205	+				-0.1
3,508,206	-				-0.0
3,508,206	-				+0.1
3,508,207	+				-0.2
3,508,207	+				-0.7
3,508,207	+				+0.0
3,508,207	+				+1.9
3,508,207	+				+0.5
3,508,207	+				+0.1
3,508,207	+				-0.4
3,508,208	-				-0.2
3,508,208	-				+0.9
3,508,208	-				+1.2
3,508,208	-				+0.1
3,508,208	-				+0.1
3,508,208	-				-1.1
3,508,208	-				+0.7
3,508,208	-				-0.1
3,508,208	-				-1.4
3,508,208	-				-2.1
3,508,208	-				-0.3
3,508,208	-				+3.3
3,508,211	+				+0.6
3,508,211	+				-0.3
3,508,212	-				-0.1
3,508,212	-				+0.2
3,508,312	+				-1.8
3,508,312	+				+1.2
3,508,312	+				+0.2
3,508,312	+				-0.4
3,508,312	+				-1.1
3,508,313	-				-0.1
3,508,313	-				-0.6
3,508,313	-				+0.9
3,508,432	+				+0.0
3,508,461	-		DDA3937_RS15280	0.11	+0.0
3,508,492	+		DDA3937_RS15280	0.13	+0.6
3,508,493	-		DDA3937_RS15280	0.13	+1.5
3,508,527	+		DDA3937_RS15280	0.15	+1.3
3,508,527	+		DDA3937_RS15280	0.15	+0.2
3,508,540	-		DDA3937_RS15280	0.16	+1.2
3,509,042	+		DDA3937_RS15280	0.53	-0.8
3,509,042	+		DDA3937_RS15280	0.53	+1.0
3,509,043	-		DDA3937_RS15280	0.53	-1.7
3,509,043	-		DDA3937_RS15280	0.53	-0.2
3,509,043	-		DDA3937_RS15280	0.53	+0.3
3,509,096	+		DDA3937_RS15280	0.57	+0.5
3,509,097	-		DDA3937_RS15280	0.57	-0.5
3,509,129	+		DDA3937_RS15280	0.60	-0.3
3,509,299	-		DDA3937_RS15280	0.72	-0.7
3,509,389	+		DDA3937_RS15280	0.79	+0.2
3,509,389	+		DDA3937_RS15280	0.79	+0.7
3,509,391	+		DDA3937_RS15280	0.79	+0.4
3,509,391	+		DDA3937_RS15280	0.79	-0.6
3,509,611	+				+2.1
3,509,611	+				-0.1
3,509,611	+				-0.0
3,509,611	+				-0.9
3,509,612	-				-0.5
3,509,612	-				-0.8
3,509,612	-				+0.8
3,509,669	+				-0.4
3,509,669	+				-0.4
3,509,669	+				-1.6
3,509,669	+				-0.6
3,509,670	-				-0.2
3,509,670	-				-0.3
3,509,670	-				-0.1
3,509,783	+		DDA3937_RS15285	0.13	+0.8
3,509,783	+		DDA3937_RS15285	0.13	-0.3
3,509,783	+		DDA3937_RS15285	0.13	+0.3
3,509,784	-		DDA3937_RS15285	0.13	+0.3
3,509,943	+		DDA3937_RS15285	0.35	-1.8
3,510,017	+		DDA3937_RS15285	0.45	-0.6
3,510,017	+		DDA3937_RS15285	0.45	+1.4
3,510,017	+		DDA3937_RS15285	0.45	-0.2
3,510,017	+		DDA3937_RS15285	0.45	+0.4
3,510,017	+		DDA3937_RS15285	0.45	+0.1
3,510,017	+		DDA3937_RS15285	0.45	-0.1
3,510,018	-		DDA3937_RS15285	0.45	+0.7
3,510,018	-		DDA3937_RS15285	0.45	-1.4
3,510,018	-		DDA3937_RS15285	0.45	+0.1
3,510,019	+		DDA3937_RS15285	0.45	-0.4
3,510,019	+		DDA3937_RS15285	0.45	-0.6
3,510,019	+		DDA3937_RS15285	0.45	-0.7
3,510,020	-		DDA3937_RS15285	0.45	-1.9
3,510,020	-		DDA3937_RS15285	0.45	+0.6
3,510,020	-		DDA3937_RS15285	0.45	+1.0
3,510,032	+		DDA3937_RS15285	0.47	+0.3
3,510,033	-		DDA3937_RS15285	0.47	-0.4
3,510,034	+		DDA3937_RS15285	0.47	-2.1
3,510,034	+		DDA3937_RS15285	0.47	-0.1
3,510,034	+		DDA3937_RS15285	0.47	-1.5
3,510,035	-		DDA3937_RS15285	0.47	-0.2
3,510,267	-		DDA3937_RS15285	0.79	-0.6
3,510,419	+				-0.6
3,510,508	+				+0.1
3,510,509	-				-0.1
3,510,509	-				+1.4
3,510,509	-				+0.3
3,510,509	-				+0.2
3,510,509	-				+0.7
3,510,510	+				-0.3
3,510,511	-				+0.1
3,510,515	+				-0.1
3,510,515	+				+1.0
3,510,516	-				+0.2
3,510,516	-				-0.9
3,510,516	-				-1.4
3,510,516	-				-0.1
3,510,516	-				+0.2
3,510,516	-				+0.9
3,510,516	-				-0.6
3,510,519	+				-0.5
3,510,519	+				+1.1
3,510,519	+				-1.4
3,510,520	-				-0.4
3,510,520	-				+0.0
3,510,520	-				-0.3
3,510,520	-				-0.1
3,510,520	-				+0.5
3,510,520	-				-1.9
3,510,522	-				+0.6
3,510,569	+				-0.4
3,510,569	+				+0.7
3,510,569	+				-1.6
3,510,569	+				+0.3
3,510,569	+				+0.1
3,510,569	+				-0.1
3,510,569	+				+0.0
3,510,569	+				+0.6
3,510,570	-				-0.6
3,510,570	-				-0.5
3,510,570	-				-0.5
3,510,570	-				+0.5
3,510,570	-				-2.2
3,510,570	-				-0.4
3,510,570	-				+0.1
3,510,570	-				+0.0
3,510,570	-				+0.4
3,510,574	+				-0.1
3,510,574	+				-0.2
3,510,575	-				+0.3
3,510,575	-				-0.2
3,510,575	-				-1.6
3,510,581	+				-0.0
3,510,581	+				+0.1
3,510,582	-				+0.3
3,510,582	-				-0.4
3,510,585	+				+0.3
3,510,586	-				-1.4
3,510,605	+				-0.2
3,510,605	+				-0.1
3,510,621	-				-0.4
3,510,651	-				-2.2