Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15185

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,482,547	-				+0.7
3,482,573	+		DDA3937_RS15175	0.11	-0.5
3,482,573	+		DDA3937_RS15175	0.11	+0.1
3,482,609	+		DDA3937_RS15175	0.18	-0.1
3,482,609	+		DDA3937_RS15175	0.18	-1.3
3,482,610	-		DDA3937_RS15175	0.18	-0.2
3,482,661	-		DDA3937_RS15175	0.27	+0.7
3,482,731	+		DDA3937_RS15175	0.41	-0.1
3,482,732	-		DDA3937_RS15175	0.41	+0.7
3,482,751	+		DDA3937_RS15175	0.45	-1.2
3,482,751	+				-1.9
3,482,751	+		DDA3937_RS15175	0.45	-0.4
3,482,751	+		DDA3937_RS15175	0.45	+0.1
3,482,752	-		DDA3937_RS15175	0.45	-0.1
3,482,752	-		DDA3937_RS15175	0.45	-0.9
3,482,752	-		DDA3937_RS15175	0.45	+1.5
3,482,807	-		DDA3937_RS15175	0.55	+0.3
3,482,857	+		DDA3937_RS15175	0.65	-0.7
3,482,858	-		DDA3937_RS15175	0.65	+0.9
3,482,922	-		DDA3937_RS15175	0.77	+0.7
3,482,975	+		DDA3937_RS15175	0.87	-0.4
3,482,976	-		DDA3937_RS15175	0.87	-0.1
3,483,017	+				-0.8
3,483,018	-				-0.0
3,483,018	-				-0.5
3,483,078	+				-1.9
3,483,078	+				-0.1
3,483,078	+				+0.2
3,483,079	-				-1.0
3,483,079	-				-0.5
3,483,119	+				-0.9
3,483,138	+				-0.1
3,483,191	-				+0.1
3,483,191	-				+0.9
3,483,394	-				-0.2
3,483,457	-				-0.8
3,483,464	+				-1.6
3,483,464	+				+0.3
3,483,465	-				-0.7
3,483,474	-				-1.4
3,483,477	+				-0.5
3,483,477	+				-0.7
3,483,478	-				-0.5
3,483,523	+				-0.3
3,483,523	+				-1.1
3,483,524	-				+0.5
3,483,526	-				-1.3
3,483,538	-				+0.1
3,483,538	-				-1.0
3,483,538	-				-1.7
3,483,540	+				-0.3
3,483,540	+				-0.3
3,483,541	-				-2.1
3,483,541	-				-0.9
3,483,584	+				+0.3
3,483,584	+				+0.3
3,483,584	+				-2.7
3,483,591	+				-0.9
3,483,591	+				-0.2
3,483,592	-		DDA3937_RS15185	0.10	-0.1
3,483,592	-		DDA3937_RS15185	0.10	-2.0
3,483,592	-		DDA3937_RS15185	0.10	-0.7
3,483,594	+		DDA3937_RS15185	0.10	-0.1
3,483,594	+		DDA3937_RS15185	0.10	-0.9
3,483,594	+		DDA3937_RS15185	0.10	+0.8
3,483,595	-		DDA3937_RS15185	0.10	-1.5
3,483,598	+		DDA3937_RS15185	0.11	-0.1
3,483,598	+		DDA3937_RS15185	0.11	-2.1
3,483,598	+		DDA3937_RS15185	0.11	-0.1
3,483,598	+		DDA3937_RS15185	0.11	-0.8
3,483,598	+		DDA3937_RS15185	0.11	+0.6
3,483,599	-		DDA3937_RS15185	0.11	-0.3
3,483,648	+		DDA3937_RS15185	0.18	-1.1
3,483,648	+		DDA3937_RS15185	0.18	-0.9
3,483,724	+		DDA3937_RS15185	0.30	-0.5
3,483,725	-		DDA3937_RS15185	0.30	-0.1
3,483,787	+		DDA3937_RS15185	0.40	+0.6
3,483,788	-		DDA3937_RS15185	0.40	-2.2
3,483,788	-		DDA3937_RS15185	0.40	-2.4
3,483,789	+		DDA3937_RS15185	0.40	-0.1
3,483,789	+		DDA3937_RS15185	0.40	+0.1
3,483,790	-		DDA3937_RS15185	0.40	-1.5
3,483,840	+		DDA3937_RS15185	0.48	-0.4
3,483,840	+		DDA3937_RS15185	0.48	-1.0
3,483,840	+		DDA3937_RS15185	0.48	-0.8
3,483,840	+		DDA3937_RS15185	0.48	-0.7
3,483,893	-		DDA3937_RS15185	0.56	-0.3
3,484,096	+		DDA3937_RS15185	0.86	-1.8
3,484,097	-		DDA3937_RS15185	0.87	-1.7
3,484,120	+				-0.3
3,484,120	+				-1.5
3,484,120	+				+0.7
3,484,120	+				-0.9
3,484,120	+				-0.7
3,484,120	+				-0.7
3,484,121	-				-1.4
3,484,121	-				+0.6
3,484,121	-				+0.0
3,484,121	-				-1.7
3,484,121	-				-1.4
3,484,132	+				-1.0
3,484,132	+				+1.5
3,484,132	+				-1.6
3,484,132	+				-1.5
3,484,132	+				-1.1
3,484,132	+				+0.2
3,484,132	+				-3.1
3,484,133	-				-1.7
3,484,250	+				-1.2
3,484,315	+				+0.3
3,484,315	+				+0.2
3,484,316	-				+0.2
3,484,316	-				+0.6
3,484,320	+				-0.1
3,484,320	+				-0.0
3,484,320	+				-0.4
3,484,321	-				-0.1
3,484,340	-				-1.7
3,484,350	+				-0.1
3,484,350	+				-0.7
3,484,350	+				-1.1
3,484,350	+				-0.7
3,484,397	-		DDA3937_RS15190	0.14	+0.4
3,484,683	-				-0.4
3,484,713	+				-0.4
3,484,714	-				-0.0
3,484,714	-				-0.3
3,484,814	-		DDA3937_RS15195	0.41	-0.2
3,484,814	-		DDA3937_RS15195	0.41	+0.4
3,484,814	-		DDA3937_RS15195	0.41	-1.1
3,484,814	-		DDA3937_RS15195	0.41	+0.6
3,485,002	-				+0.0
3,485,003	+				-1.0
3,485,003	+				-0.7
3,485,003	+				-1.3
3,485,003	+				-0.7
3,485,003	+				+0.6
3,485,004	-				+0.2
3,485,004	-				-0.0
3,485,004	-				+0.2
3,485,056	+				+0.8
3,485,056	+				-2.4
3,485,056	+				-1.4
3,485,056	+				-0.5
3,485,056	+				-0.1
3,485,057	-				-0.1
3,485,057	-				-0.7
3,485,057	-				-0.7
3,485,057	-				-0.5
3,485,057	-				-1.0
3,485,057	-				-0.3
3,485,059	+				-1.0
3,485,059	+				-0.7
3,485,060	-				+0.7
3,485,060	-				-0.4
3,485,060	-				-1.1
3,485,060	-				+0.4
3,485,063	-				+0.1
3,485,067	+				-0.5
3,485,068	-				-0.6
3,485,068	-				+0.0
3,485,148	+				-0.7
3,485,148	+				-0.3
3,485,148	+				+0.4
3,485,148	+				-0.4
3,485,149	-				-0.1
3,485,149	-				-1.1
3,485,149	-				+0.0
3,485,149	-				-0.5
3,485,149	-				+0.9
3,485,149	-				-1.4
3,485,157	+				-1.2
3,485,157	+				+0.0
3,485,157	+				-0.5
3,485,158	-				+0.6
3,485,158	-				-0.1
3,485,158	-				+1.4
3,485,158	-				+0.2
3,485,158	-				-0.7
3,485,158	-				-0.8
3,485,158	-				-0.7
3,485,160	+				-1.1
3,485,161	-				+0.5
3,485,161	-				-0.8
3,485,161	-				+0.0
3,485,179	+				-0.3
3,485,179	+				-0.5
3,485,179	+				+1.5
3,485,179	+				+0.6
3,485,179	+				-0.4
3,485,179	+				+0.5
3,485,180	-				+0.2
3,485,180	-				-0.2
3,485,180	-				-0.1