Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13835

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,146,053	+				-1.2
3,146,053	+				+0.4
3,146,053	+				-0.2
3,146,054	-				-1.5
3,146,054	-				-1.7
3,146,054	-				-1.5
3,146,057	+				-0.2
3,146,057	+				+0.0
3,146,075	+				+0.0
3,146,075	+				-1.2
3,146,075	+				+0.6
3,146,076	-				-0.1
3,146,076	-				-0.2
3,146,097	+				-1.2
3,146,097	+				-1.5
3,146,097	+				-2.2
3,146,098	-				-0.7
3,146,098	-				-0.5
3,146,119	+				-0.4
3,146,119	+				+3.4
3,146,120	-				+0.7
3,146,176	-				+0.2
3,146,176	-				+0.3
3,146,196	+				-0.3
3,146,196	+				-0.6
3,146,196	+				-0.6
3,146,197	-				+0.6
3,146,197	-				+0.1
3,146,215	+				-0.0
3,146,215	+				-0.5
3,146,216	-				+0.0
3,146,216	-				-1.4
3,146,216	-				+1.2
3,146,219	+				-0.9
3,146,219	+				-1.5
3,146,219	+				-2.3
3,146,219	+				+0.1
3,146,219	+				-1.6
3,146,220	-				+0.9
3,146,220	-				-0.2
3,146,220	-				-1.2
3,146,220	-				+0.3
3,146,220	-				+0.5
3,146,235	-				+0.6
3,146,237	+				-0.7
3,146,250	+				-0.0
3,146,250	+				-0.5
3,146,251	-				-0.2
3,146,251	-				-0.9
3,146,251	-				-0.2
3,146,254	-				-0.4
3,146,254	-				+0.3
3,146,254	-				+0.8
3,146,309	+				+0.2
3,146,310	-				-0.2
3,146,321	-				-1.0
3,146,410	+				-2.7
3,146,410	+				-1.9
3,146,410	+				+0.8
3,146,410	+				-1.4
3,146,411	-				-0.2
3,146,411	-				+1.1
3,146,411	-				-0.5
3,146,411	-				-0.4
3,146,413	+				-0.3
3,146,434	-				+0.8
3,146,437	+				-1.2
3,146,446	-				-1.3
3,146,446	-				-0.3
3,146,501	+				+3.1
3,146,501	+				+0.4
3,146,501	+				-1.4
3,146,502	-				+0.8
3,146,550	+				+0.6
3,146,551	-				+0.3
3,146,551	-				+2.1
3,146,551	-				-1.0
3,146,577	+				+0.7
3,146,578	-				-1.0
3,146,602	+				-0.1
3,146,706	-				-1.2
3,146,730	-				-1.0
3,146,733	+				+0.5
3,146,733	+				-1.0
3,146,734	-				+0.4
3,146,740	+				-0.0
3,146,741	-				+0.5
3,147,127	-		DDA3937_RS13835	0.16	+1.5
3,147,145	+		DDA3937_RS13835	0.19	+0.6
3,147,145	+		DDA3937_RS13835	0.19	+0.5
3,147,146	-				-0.5
3,147,183	-		DDA3937_RS13835	0.25	+0.5
3,147,224	+		DDA3937_RS13835	0.31	+0.7
3,147,325	+		DDA3937_RS13835	0.47	-0.2
3,147,325	+		DDA3937_RS13835	0.47	-0.9
3,147,325	+		DDA3937_RS13835	0.47	-0.9
3,147,375	+		DDA3937_RS13835	0.55	+1.1
3,147,376	-		DDA3937_RS13835	0.55	-0.1
3,147,376	-		DDA3937_RS13835	0.55	+1.0
3,147,414	+		DDA3937_RS13835	0.61	-0.2
3,147,415	-		DDA3937_RS13835	0.61	+1.0
3,147,415	-		DDA3937_RS13835	0.61	+0.4
3,147,415	-		DDA3937_RS13835	0.61	-1.0
3,147,417	+		DDA3937_RS13835	0.61	+0.0
3,147,418	-		DDA3937_RS13835	0.61	-0.4
3,147,462	-		DDA3937_RS13835	0.68	-0.1
3,147,474	+		DDA3937_RS13835	0.70	+0.2
3,147,474	+		DDA3937_RS13835	0.70	-0.0
3,147,475	-		DDA3937_RS13835	0.70	-0.1
3,147,475	-		DDA3937_RS13835	0.70	+0.3
3,147,655	+				+0.0
3,147,656	-				+0.7
3,147,656	-				+0.3
3,147,656	-				+0.5
3,147,703	+				-0.7
3,147,703	+				+0.1
3,147,703	+				+0.8
3,147,704	-				+1.4
3,147,704	-				+0.4
3,147,704	-				+2.0
3,147,704	-				+1.5
3,147,704	-				+0.6
3,147,708	-				-0.0
3,147,766	-		DDA3937_RS13840	0.30	+0.1
3,147,766	-		DDA3937_RS13840	0.30	-0.0
3,147,766	-		DDA3937_RS13840	0.30	+0.3
3,147,856	+		DDA3937_RS13840	0.62	+0.1
3,147,856	+		DDA3937_RS13840	0.62	+0.4
3,147,856	+		DDA3937_RS13840	0.62	-0.2
3,147,857	-		DDA3937_RS13840	0.62	-0.6
3,147,857	-		DDA3937_RS13840	0.62	+0.8
3,147,950	-				+0.5
3,147,962	-				-1.7
3,148,088	+				-0.3
3,148,088	+				-1.7
3,148,088	+				+0.7
3,148,088	+				-0.5
3,148,088	+				-0.6
3,148,088	+				-0.7
3,148,154	+				+0.1
3,148,181	-				-0.3
3,148,245	-				-0.5
3,148,245	-				-0.9
3,148,258	+		DDA3937_RS13845	0.10	-1.9
3,148,259	-		DDA3937_RS13845	0.10	-0.0
3,148,313	+		DDA3937_RS13845	0.12	+0.1
3,148,313	+		DDA3937_RS13845	0.12	-0.3
3,148,313	+		DDA3937_RS13845	0.12	+1.3
3,148,313	+		DDA3937_RS13845	0.12	-0.1
3,148,313	+		DDA3937_RS13845	0.12	-0.6
3,148,313	+		DDA3937_RS13845	0.12	-0.3
3,148,313	+		DDA3937_RS13845	0.12	-1.0
3,148,314	-		DDA3937_RS13845	0.12	+0.5
3,148,314	-		DDA3937_RS13845	0.12	-0.4
3,148,314	-		DDA3937_RS13845	0.12	-0.5
3,148,314	-		DDA3937_RS13845	0.12	-0.2
3,148,314	-		DDA3937_RS13845	0.12	-0.2
3,148,314	-		DDA3937_RS13845	0.12	+0.0
3,148,314	-		DDA3937_RS13845	0.12	-1.7
3,148,314	-		DDA3937_RS13845	0.12	-0.1
3,148,323	-		DDA3937_RS13845	0.13	-0.2
3,148,469	+		DDA3937_RS13845	0.18	+0.3
3,148,469	+		DDA3937_RS13845	0.18	-0.9
3,148,470	-		DDA3937_RS13845	0.18	+0.1
3,148,470	-		DDA3937_RS13845	0.18	-0.2
3,148,493	+		DDA3937_RS13845	0.19	+0.5
3,148,493	+		DDA3937_RS13845	0.19	-1.2
3,148,493	+		DDA3937_RS13845	0.19	-0.5
3,148,494	-				+0.8
3,148,494	-		DDA3937_RS13845	0.19	-0.1
3,148,494	-		DDA3937_RS13845	0.19	+0.0
3,148,494	-		DDA3937_RS13845	0.19	+0.7
3,148,494	-		DDA3937_RS13845	0.19	-2.4
3,148,494	-		DDA3937_RS13845	0.19	-1.0
3,148,494	-		DDA3937_RS13845	0.19	+0.4
3,148,494	-		DDA3937_RS13845	0.19	-0.3
3,148,507	-		DDA3937_RS13845	0.19	+0.4
3,148,517	+		DDA3937_RS13845	0.20	-0.2
3,148,517	+		DDA3937_RS13845	0.20	-1.6
3,148,518	-		DDA3937_RS13845	0.20	+0.8
3,148,580	+		DDA3937_RS13845	0.22	+0.3
3,148,581	-		DDA3937_RS13845	0.22	-1.2
3,148,637	+		DDA3937_RS13845	0.24	-1.2
3,148,638	-		DDA3937_RS13845	0.24	-0.2