Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13380

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,054,473	-		DDA3937_RS13370	0.89	-0.2
3,054,476	+		DDA3937_RS13370	0.89	-0.4
3,054,476	+		DDA3937_RS13370	0.89	-0.4
3,054,476	+		DDA3937_RS13370	0.89	-0.7
3,054,476	+		DDA3937_RS13370	0.89	-0.1
3,054,476	+		DDA3937_RS13370	0.89	-0.3
3,054,476	+		DDA3937_RS13370	0.89	-0.2
3,054,476	+		DDA3937_RS13370	0.89	-0.6
3,054,476	+		DDA3937_RS13370	0.89	-0.4
3,054,476	+		DDA3937_RS13370	0.89	+1.0
3,054,476	+		DDA3937_RS13370	0.89	+1.0
3,054,476	+		DDA3937_RS13370	0.89	+1.1
3,054,476	+		DDA3937_RS13370	0.89	+0.3
3,054,476	+		DDA3937_RS13370	0.89	-0.3
3,054,477	-		DDA3937_RS13370	0.89	-1.0
3,054,477	-		DDA3937_RS13370	0.89	-0.9
3,054,477	-		DDA3937_RS13370	0.89	-0.5
3,054,477	-		DDA3937_RS13370	0.89	+0.5
3,054,477	-		DDA3937_RS13370	0.89	-0.6
3,054,477	-		DDA3937_RS13370	0.89	+0.3
3,054,477	-		DDA3937_RS13370	0.89	-0.0
3,054,477	-		DDA3937_RS13370	0.89	-0.6
3,054,477	-		DDA3937_RS13370	0.89	+1.0
3,054,477	-		DDA3937_RS13370	0.89	-0.2
3,054,477	-		DDA3937_RS13370	0.89	+0.2
3,054,477	-		DDA3937_RS13370	0.89	-0.8
3,054,477	-		DDA3937_RS13370	0.89	+0.6
3,054,520	+				+0.5
3,054,520	+				+0.1
3,054,520	+				-0.5
3,054,520	+				-0.3
3,054,520	+				-0.2
3,054,521	-				+0.1
3,054,579	+				+0.2
3,054,580	-				-0.5
3,054,723	+		DDA3937_RS13375	0.21	+2.1
3,054,998	+		DDA3937_RS13375	0.58	+0.4
3,055,064	+		DDA3937_RS13375	0.67	-0.1
3,055,064	+		DDA3937_RS13375	0.67	+1.0
3,055,064	+		DDA3937_RS13375	0.67	-0.2
3,055,064	+		DDA3937_RS13375	0.67	+1.4
3,055,064	+		DDA3937_RS13375	0.67	+1.0
3,055,065	-		DDA3937_RS13375	0.67	-3.0
3,055,065	-		DDA3937_RS13375	0.67	+0.0
3,055,119	-		DDA3937_RS13375	0.74	+0.2
3,055,161	+		DDA3937_RS13375	0.80	-0.4
3,055,343	+				-2.6
3,055,343	+				+0.6
3,055,344	-				-0.7
3,055,344	-				-1.0
3,055,344	-				-2.1
3,055,364	+				-1.5
3,055,373	+				-0.2
3,055,373	+				-0.3
3,055,373	+				+0.2
3,055,373	+				-0.8
3,055,374	-				+0.2
3,055,374	-				-0.3
3,055,504	+		DDA3937_RS13380	0.14	+0.3
3,055,505	-		DDA3937_RS13380	0.14	+0.1
3,055,505	-		DDA3937_RS13380	0.14	-0.2
3,055,505	-		DDA3937_RS13380	0.14	+0.8
3,055,593	+		DDA3937_RS13380	0.21	+0.8
3,055,594	-		DDA3937_RS13380	0.21	+0.4
3,055,594	-		DDA3937_RS13380	0.21	-1.1
3,055,594	-		DDA3937_RS13380	0.21	+0.1
3,055,594	-		DDA3937_RS13380	0.21	+0.4
3,055,594	-		DDA3937_RS13380	0.21	+0.7
3,055,594	-		DDA3937_RS13380	0.21	-1.4
3,055,636	+		DDA3937_RS13380	0.24	+0.8
3,055,636	+		DDA3937_RS13380	0.24	-0.2
3,055,643	-		DDA3937_RS13380	0.24	+0.2
3,055,643	-		DDA3937_RS13380	0.24	+0.1
3,055,719	+		DDA3937_RS13380	0.30	-0.4
3,055,719	+		DDA3937_RS13380	0.30	+1.5
3,055,763	+		DDA3937_RS13380	0.33	-1.8
3,055,764	-		DDA3937_RS13380	0.33	+0.2
3,055,839	-		DDA3937_RS13380	0.39	-0.9
3,055,839	-		DDA3937_RS13380	0.39	-0.2
3,055,839	-		DDA3937_RS13380	0.39	+0.0
3,055,868	+		DDA3937_RS13380	0.41	-0.2
3,055,900	-		DDA3937_RS13380	0.43	-0.4
3,055,900	-		DDA3937_RS13380	0.43	-0.7
3,055,900	-		DDA3937_RS13380	0.43	-0.3
3,055,901	+		DDA3937_RS13380	0.43	+0.4
3,055,902	-		DDA3937_RS13380	0.43	-0.6
3,055,902	-		DDA3937_RS13380	0.43	-0.2
3,055,921	+		DDA3937_RS13380	0.44	-0.8
3,055,921	+		DDA3937_RS13380	0.44	-0.7
3,055,922	-				-0.2
3,055,973	+		DDA3937_RS13380	0.48	+0.0
3,056,045	+		DDA3937_RS13380	0.54	-1.4
3,056,061	+		DDA3937_RS13380	0.55	-0.3
3,056,062	-		DDA3937_RS13380	0.55	-0.6
3,056,062	-		DDA3937_RS13380	0.55	-0.7
3,056,062	-		DDA3937_RS13380	0.55	-0.3
3,056,062	-		DDA3937_RS13380	0.55	-0.2
3,056,066	+		DDA3937_RS13380	0.55	+1.0
3,056,066	+		DDA3937_RS13380	0.55	+0.3
3,056,107	+		DDA3937_RS13380	0.58	-0.4
3,056,107	+				+0.1
3,056,107	+		DDA3937_RS13380	0.58	+0.3
3,056,107	+		DDA3937_RS13380	0.58	+0.8
3,056,107	+		DDA3937_RS13380	0.58	-0.1
3,056,107	+		DDA3937_RS13380	0.58	-0.3
3,056,107	+		DDA3937_RS13380	0.58	-0.0
3,056,108	-		DDA3937_RS13380	0.58	-0.3
3,056,108	-		DDA3937_RS13380	0.58	-0.4
3,056,108	-		DDA3937_RS13380	0.58	+1.8
3,056,108	-		DDA3937_RS13380	0.58	+0.3
3,056,108	-		DDA3937_RS13380	0.58	+0.0
3,056,108	-		DDA3937_RS13380	0.58	+0.3
3,056,108	-		DDA3937_RS13380	0.58	+0.1
3,056,108	-		DDA3937_RS13380	0.58	+1.8
3,056,117	+		DDA3937_RS13380	0.59	+0.1
3,056,117	+		DDA3937_RS13380	0.59	-1.7
3,056,216	+		DDA3937_RS13380	0.66	-0.2
3,056,234	-		DDA3937_RS13380	0.67	-0.9
3,056,252	+		DDA3937_RS13380	0.69	+1.2
3,056,252	+		DDA3937_RS13380	0.69	-0.5
3,056,253	-		DDA3937_RS13380	0.69	-0.1
3,056,270	+		DDA3937_RS13380	0.70	-0.3
3,056,270	+		DDA3937_RS13380	0.70	+0.1
3,056,271	-		DDA3937_RS13380	0.70	-0.5
3,056,285	+		DDA3937_RS13380	0.71	-1.2
3,056,357	+		DDA3937_RS13380	0.76	-1.8
3,056,357	+		DDA3937_RS13380	0.76	-0.6
3,056,358	-		DDA3937_RS13380	0.76	-0.3
3,056,358	-		DDA3937_RS13380	0.76	-1.6
3,056,358	-		DDA3937_RS13380	0.76	-0.3
3,056,395	-		DDA3937_RS13380	0.79	-0.4
3,056,420	+		DDA3937_RS13380	0.81	+1.0
3,056,420	+		DDA3937_RS13380	0.81	-0.8
3,056,421	-		DDA3937_RS13380	0.81	-1.0
3,056,421	-		DDA3937_RS13380	0.81	+0.5
3,056,423	+		DDA3937_RS13380	0.81	-0.2
3,056,446	+		DDA3937_RS13380	0.83	-0.2
3,056,446	+		DDA3937_RS13380	0.83	-0.2
3,056,446	+		DDA3937_RS13380	0.83	+0.2
3,056,446	+		DDA3937_RS13380	0.83	-1.1
3,056,446	+		DDA3937_RS13380	0.83	+0.5
3,056,446	+		DDA3937_RS13380	0.83	+0.4
3,056,446	+		DDA3937_RS13380	0.83	+0.6
3,056,447	-		DDA3937_RS13380	0.83	-0.9
3,056,447	-		DDA3937_RS13380	0.83	-0.5
3,056,460	+		DDA3937_RS13380	0.84	+0.4
3,056,500	-		DDA3937_RS13380	0.87	-0.4
3,056,500	-		DDA3937_RS13380	0.87	-0.4
3,056,500	-		DDA3937_RS13380	0.87	-2.2
3,056,523	-		DDA3937_RS13380	0.88	-1.4
3,056,523	-		DDA3937_RS13380	0.88	+0.0
3,056,523	-		DDA3937_RS13380	0.88	-1.0
3,056,535	+		DDA3937_RS13380	0.89	+0.2
3,056,535	+		DDA3937_RS13380	0.89	-2.8
3,056,572	+				+0.5
3,056,572	+				-2.0
3,056,658	-				+0.2
3,056,671	-				+1.2
3,056,673	-				+0.7
3,056,704	+				-0.3
3,056,704	+				-0.0
3,056,705	-				-0.7
3,056,807	-		DDA3937_RS13385	0.27	-1.6
3,056,817	+		DDA3937_RS13385	0.29	-0.2
3,056,818	-		DDA3937_RS13385	0.29	-1.0
3,056,818	-		DDA3937_RS13385	0.29	-0.9
3,056,818	-		DDA3937_RS13385	0.29	-0.3
3,056,894	+		DDA3937_RS13385	0.46	+0.5
3,056,905	+		DDA3937_RS13385	0.49	+0.2
3,056,950	-		DDA3937_RS13385	0.59	-0.3
3,056,952	+		DDA3937_RS13385	0.59	-0.3
3,056,952	+		DDA3937_RS13385	0.59	+0.6
3,056,952	+		DDA3937_RS13385	0.59	+0.6
3,056,952	+		DDA3937_RS13385	0.59	-0.1
3,057,022	+		DDA3937_RS13385	0.75	+0.5
3,057,022	+		DDA3937_RS13385	0.75	-1.4
3,057,022	+		DDA3937_RS13385	0.75	+0.6
3,057,023	-		DDA3937_RS13385	0.76	-0.6
3,057,023	-		DDA3937_RS13385	0.76	+1.0
3,057,023	-		DDA3937_RS13385	0.76	-0.8
3,057,049	+		DDA3937_RS13385	0.81	-0.6
3,057,050	-		DDA3937_RS13385	0.82	-0.6
3,057,128	+				+0.2
3,057,128	+				-0.1
3,057,129	-				-0.8
3,057,129	-				-1.2
3,057,129	-				-0.6
3,057,133	-				-1.2
3,057,133	-				+1.1
3,057,133	-				-0.5
3,057,133	-				-1.1
3,057,203	+				+0.4
3,057,204	-				-1.5
3,057,231	-				+0.2
3,057,231	-				+0.0
3,057,396	+		DDA3937_RS13390	0.20	-0.4
3,057,516	+		DDA3937_RS13390	0.29	+1.4
3,057,545	+		DDA3937_RS13390	0.31	-0.8
3,057,553	-		DDA3937_RS13390	0.32	-0.4
3,057,553	-		DDA3937_RS13390	0.32	-0.3
3,057,582	+		DDA3937_RS13390	0.34	-1.2
3,057,582	+		DDA3937_RS13390	0.34	-1.5