Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12820

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,918,628	+		DDA3937_RS12815	0.62	-0.8
2,918,629	-		DDA3937_RS12815	0.62	-0.6
2,918,688	+		DDA3937_RS12815	0.68	-0.1
2,918,689	-		DDA3937_RS12815	0.68	-0.3
2,918,925	+				+0.4
2,918,925	+				-1.2
2,918,926	-				-0.5
2,919,251	-		DDA3937_RS22300	0.64	+0.2
2,919,261	+		DDA3937_RS22300	0.70	+0.0
2,919,378	+				+0.6
2,919,378	+				-0.7
2,919,379	-				+0.0
2,919,379	-				+0.8
2,919,433	+				+0.4
2,919,434	-				-0.4
2,919,434	-				+0.6
2,919,450	-				-2.0
2,919,552	+				-0.3
2,919,552	+				-1.0
2,919,553	-				+0.4
2,919,553	-				-0.0
2,919,559	+				+0.3
2,919,559	+				-0.1
2,919,559	+				-0.7
2,919,560	-				-0.6
2,919,562	-				-0.2
2,919,574	-				+0.6
2,919,579	+				-0.4
2,919,581	+				+0.5
2,919,599	+				+0.5
2,919,683	+		DDA3937_RS12820	0.12	-1.7
2,919,696	+		DDA3937_RS12820	0.15	-0.8
2,919,697	-		DDA3937_RS12820	0.15	-2.5
2,919,751	+		DDA3937_RS12820	0.24	-1.1
2,919,751	+		DDA3937_RS12820	0.24	-0.8
2,919,952	+		DDA3937_RS12820	0.60	-2.2
2,919,969	+		DDA3937_RS12820	0.63	-1.0
2,919,969	+		DDA3937_RS12820	0.63	-0.2
2,919,969	+		DDA3937_RS12820	0.63	-0.1
2,919,970	-		DDA3937_RS12820	0.63	-0.4
2,920,107	+		DDA3937_RS12820	0.87	-0.4
2,920,108	-		DDA3937_RS12820	0.88	-0.7
2,920,108	-		DDA3937_RS12820	0.88	-2.0
2,920,108	-		DDA3937_RS12820	0.88	+0.5
2,920,110	+		DDA3937_RS12820	0.88	-0.6
2,920,110	+		DDA3937_RS12820	0.88	-0.8
2,920,111	-		DDA3937_RS12820	0.88	+0.0
2,920,129	+				-0.4
2,920,129	+				-0.6
2,920,173	-				+0.2
2,920,173	-				-2.4
2,920,236	+				-0.4
2,920,236	+				+0.6
2,920,237	-				-1.0
2,920,237	-				-0.4
2,920,237	-				-1.0
2,920,237	-				-0.9
2,920,237	-				-0.8
2,920,314	+				+1.3
2,920,314	+				+0.2
2,920,314	+				+0.8
2,920,315	-				+0.5
2,920,321	-				+0.8
2,920,321	-				-0.1
2,920,321	-				-0.1
2,920,322	+				+0.0
2,920,322	+				-0.7
2,920,322	+				-1.3
2,920,322	+				+1.0
2,920,322	+				-0.5
2,920,322	+				-1.0
2,920,323	-				+0.0
2,920,323	-				-1.2
2,920,377	+		DDA3937_RS12825	0.12	-1.4
2,920,378	-		DDA3937_RS12825	0.12	-1.2
2,920,378	-		DDA3937_RS12825	0.12	-0.5
2,920,419	+		DDA3937_RS12825	0.15	-0.2
2,920,419	+		DDA3937_RS12825	0.15	-0.1
2,920,438	+		DDA3937_RS12825	0.16	+2.0
2,920,536	+		DDA3937_RS12825	0.22	+0.8
2,920,536	+		DDA3937_RS12825	0.22	-0.1
2,920,670	+		DDA3937_RS12825	0.30	-1.2
2,920,670	+		DDA3937_RS12825	0.30	-0.4
2,920,671	-		DDA3937_RS12825	0.30	+0.2
2,920,671	-		DDA3937_RS12825	0.30	-0.7
2,920,734	+		DDA3937_RS12825	0.34	-1.8
2,920,735	-		DDA3937_RS12825	0.34	+0.5
2,920,735	-		DDA3937_RS12825	0.34	-1.5
2,920,955	+		DDA3937_RS12825	0.47	-0.6
2,920,955	+		DDA3937_RS12825	0.47	-1.0
2,920,955	+		DDA3937_RS12825	0.47	-0.4
2,920,956	-		DDA3937_RS12825	0.47	-0.7
2,920,956	-		DDA3937_RS12825	0.47	+1.0
2,920,956	-		DDA3937_RS12825	0.47	-1.5
2,920,956	-		DDA3937_RS12825	0.47	-1.2
2,920,956	-		DDA3937_RS12825	0.47	-0.0
2,920,956	-		DDA3937_RS12825	0.47	-1.2
2,920,956	-		DDA3937_RS12825	0.47	-1.0
2,920,964	+		DDA3937_RS12825	0.48	-0.0
2,920,964	+		DDA3937_RS12825	0.48	-1.5
2,920,965	-		DDA3937_RS12825	0.48	-0.1
2,920,973	+		DDA3937_RS12825	0.49	-0.8
2,920,973	+		DDA3937_RS12825	0.49	+0.7
2,920,974	-		DDA3937_RS12825	0.49	-0.5