Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12385

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,817,344	-		DDA3937_RS12380	0.31	+1.0
2,817,344	-		DDA3937_RS12380	0.31	-0.6
2,817,344	-		DDA3937_RS12380	0.31	-1.8
2,817,360	-		DDA3937_RS12380	0.32	+0.1
2,817,361	+		DDA3937_RS12380	0.32	+1.0
2,817,361	+		DDA3937_RS12380	0.32	-0.3
2,817,361	+		DDA3937_RS12380	0.32	+1.1
2,817,361	+		DDA3937_RS12380	0.32	-0.3
2,817,361	+				+1.1
2,817,361	+		DDA3937_RS12380	0.32	+0.1
2,817,361	+		DDA3937_RS12380	0.32	+0.4
2,817,362	-		DDA3937_RS12380	0.32	+0.3
2,817,396	+		DDA3937_RS12380	0.35	+0.4
2,817,396	+		DDA3937_RS12380	0.35	-1.0
2,817,449	+		DDA3937_RS12380	0.40	+0.2
2,817,449	+		DDA3937_RS12380	0.40	+1.7
2,817,449	+		DDA3937_RS12380	0.40	+0.9
2,817,573	-		DDA3937_RS12380	0.51	+0.7
2,817,756	+		DDA3937_RS12380	0.66	-0.3
2,817,757	-		DDA3937_RS12380	0.66	-1.5
2,817,815	+		DDA3937_RS12380	0.72	+1.4
2,817,816	-		DDA3937_RS12380	0.72	-0.9
2,818,007	-		DDA3937_RS12380	0.88	-0.8
2,818,007	-		DDA3937_RS12380	0.88	-1.0
2,818,028	+				-2.2
2,818,028	+				-1.1
2,818,029	-				-0.3
2,818,029	-				+2.6
2,818,029	-				+1.0
2,818,029	-				+0.7
2,818,029	-				-1.8
2,818,029	-				+0.1
2,818,095	-				-0.3
2,818,095	-				+1.7
2,818,210	-				-0.3
2,818,210	-				-0.9
2,818,210	-				+0.7
2,818,238	-				-1.1
2,818,244	-				+0.1
2,818,244	-				-1.9
2,818,246	-				+0.7
2,818,255	+				+0.3
2,818,256	-				-1.0
2,818,276	+				+0.3
2,818,279	+				-0.9
2,818,279	+				+0.1
2,818,583	+		DDA3937_RS12385	0.32	-0.5
2,818,584	-		DDA3937_RS12385	0.32	-0.7
2,818,617	+		DDA3937_RS12385	0.36	-1.3
2,818,617	+		DDA3937_RS12385	0.36	-0.2
2,818,617	+		DDA3937_RS12385	0.36	-1.1
2,818,617	+		DDA3937_RS12385	0.36	+0.7
2,818,617	+		DDA3937_RS12385	0.36	-0.8
2,818,617	+		DDA3937_RS12385	0.36	+0.1
2,818,618	-		DDA3937_RS12385	0.36	-0.8
2,818,618	-		DDA3937_RS12385	0.36	-1.2
2,818,618	-		DDA3937_RS12385	0.36	-0.7
2,818,618	-		DDA3937_RS12385	0.36	-0.9
2,818,618	-		DDA3937_RS12385	0.36	+0.7
2,818,619	+		DDA3937_RS12385	0.36	+2.3
2,818,619	+		DDA3937_RS12385	0.36	-0.2
2,818,619	+		DDA3937_RS12385	0.36	-0.4
2,818,619	+		DDA3937_RS12385	0.36	+0.7
2,818,619	+		DDA3937_RS12385	0.36	-0.3
2,818,620	-		DDA3937_RS12385	0.36	-0.9
2,818,620	-		DDA3937_RS12385	0.36	-2.8
2,818,620	-		DDA3937_RS12385	0.36	+0.0
2,818,620	-		DDA3937_RS12385	0.36	-0.7
2,818,620	-		DDA3937_RS12385	0.36	-0.3
2,818,620	-		DDA3937_RS12385	0.36	+0.5
2,818,620	-		DDA3937_RS12385	0.36	-0.6
2,818,620	-		DDA3937_RS12385	0.36	-0.6
2,818,706	+		DDA3937_RS12385	0.46	+0.7
2,818,817	-		DDA3937_RS12385	0.58	+0.7
2,818,919	+		DDA3937_RS12385	0.70	+0.5
2,818,919	+		DDA3937_RS12385	0.70	-0.3
2,818,941	-		DDA3937_RS12385	0.72	-0.1
2,818,941	-		DDA3937_RS12385	0.72	-0.5
2,818,941	-		DDA3937_RS12385	0.72	-0.2
2,818,970	+		DDA3937_RS12385	0.75	-1.9
2,818,971	-		DDA3937_RS12385	0.75	-0.4
2,818,974	+		DDA3937_RS12385	0.76	-0.4
2,818,975	-		DDA3937_RS12385	0.76	-0.2
2,819,026	-		DDA3937_RS12385	0.82	-0.7
2,819,026	-		DDA3937_RS12385	0.82	-0.2
2,819,053	-		DDA3937_RS12385	0.85	-0.3
2,819,053	-		DDA3937_RS12385	0.85	-0.7
2,819,053	-		DDA3937_RS12385	0.85	-1.5
2,819,053	-		DDA3937_RS12385	0.85	-0.2
2,819,070	+		DDA3937_RS12385	0.86	-0.6
2,819,091	+		DDA3937_RS12385	0.89	-0.6
2,819,091	+		DDA3937_RS12385	0.89	+0.4
2,819,091	+		DDA3937_RS12385	0.89	-2.6
2,819,092	-		DDA3937_RS12385	0.89	+0.7
2,819,119	+				-2.9
2,819,119	+				+0.4
2,819,122	+				-0.7
2,819,159	+				-0.1
2,819,189	-				+0.1
2,819,382	+				-1.9
2,819,382	+				-1.9
2,819,382	+				-0.6
2,819,383	-				-0.0
2,819,383	-				-1.6
2,819,383	-				-0.5
2,819,383	-				-1.1
2,819,383	-				-0.3
2,819,383	-				+0.2
2,819,383	-				-0.7
2,819,389	-				-0.3
2,819,506	-				-0.6
2,819,565	-				-2.1
2,819,565	-				+0.4
2,819,573	+				+0.2
2,819,729	+		DDA3937_RS12390	0.18	-1.3
2,819,771	+		DDA3937_RS12390	0.20	-1.0
2,819,787	+		DDA3937_RS12390	0.21	-0.3
2,819,930	+		DDA3937_RS12390	0.31	+0.7
2,819,931	-		DDA3937_RS12390	0.31	-2.3
2,819,931	-		DDA3937_RS12390	0.31	+0.7