Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11645

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,646,877	+		DDA3937_RS11640	0.43	-1.0
2,646,896	+		DDA3937_RS11640	0.45	-0.1
2,646,897	-		DDA3937_RS11640	0.45	+0.4
2,646,897	-		DDA3937_RS11640	0.45	+0.4
2,646,970	-		DDA3937_RS11640	0.53	+0.1
2,647,059	+		DDA3937_RS11640	0.62	+1.6
2,647,060	-		DDA3937_RS11640	0.62	-0.8
2,647,060	-		DDA3937_RS11640	0.62	-0.7
2,647,060	-		DDA3937_RS11640	0.62	+1.0
2,647,109	+		DDA3937_RS11640	0.67	-0.3
2,647,139	+		DDA3937_RS11640	0.70	+0.3
2,647,162	+		DDA3937_RS11640	0.72	+1.3
2,647,163	-		DDA3937_RS11640	0.72	+0.0
2,647,246	-		DDA3937_RS11640	0.81	-0.5
2,647,292	-		DDA3937_RS11640	0.85	-0.5
2,647,297	-		DDA3937_RS11640	0.86	-0.5
2,647,318	-		DDA3937_RS11640	0.88	-1.2
2,647,348	+				-1.4
2,647,348	+				+0.0
2,647,348	+				-0.7
2,647,349	-				-0.0
2,647,349	-				-0.2
2,647,349	-				-1.6
2,647,350	+				+0.6
2,647,350	+				-2.2
2,647,350	+				+1.9
2,647,351	-				-0.6
2,647,351	-				+0.2
2,647,351	-				+0.5
2,647,351	-				+0.6
2,647,351	-				-1.1
2,647,420	-				-0.7
2,647,446	+				+0.2
2,647,457	-				-1.4
2,647,459	-				+2.6
2,647,515	+				-0.7
2,647,515	+				+0.0
2,647,515	+				-0.0
2,647,515	+				-0.9
2,647,515	+				-0.7
2,647,516	-				+0.1
2,647,516	-				+0.2
2,647,516	-				-0.3
2,647,516	-				+1.0
2,647,516	-				+0.1
2,647,516	-				-0.8
2,647,525	+				-2.4
2,647,526	-				-0.3
2,647,526	-				+0.0
2,647,550	+				-0.9
2,647,551	-				+0.3
2,647,551	-				+1.3
2,647,557	+				-1.9
2,647,558	-				-1.9
2,647,573	+				-0.8
2,647,626	+				-0.0
2,647,648	-				-1.3
2,647,648	-				+0.3
2,647,648	-				-0.0
2,647,648	-				+0.6
2,647,650	+				+1.6
2,647,659	-				+0.1
2,647,663	-				-0.4
2,647,673	+				+0.6
2,647,673	+				-1.9
2,647,674	-				-0.2
2,647,674	-				+0.3
2,647,681	-				-1.0
2,647,754	+				+0.0
2,647,755	-				+0.6
2,647,755	-				-1.9
2,647,837	-				-0.6
2,647,837	-				-0.8
2,647,864	+				-0.9
2,647,864	+				-0.9
2,647,864	+				-0.5
2,647,864	+				+0.1
2,647,864	+				-0.6
2,647,864	+				-0.7
2,647,864	+				-0.3
2,647,865	-				+0.5
2,647,865	-				+0.3
2,647,865	-				-0.1
2,647,871	+				-0.3
2,647,871	+				-0.6
2,647,872	-				+0.4
2,647,872	-				-0.1
2,647,904	+				+0.6
2,647,905	-				-0.4
2,647,905	-				-1.4
2,647,905	-				+0.6
2,647,959	+		DDA3937_RS11645	0.13	-0.6
2,647,960	-		DDA3937_RS11645	0.13	-1.6
2,648,073	+		DDA3937_RS11645	0.31	-1.0
2,648,073	+		DDA3937_RS11645	0.31	-0.7
2,648,107	+		DDA3937_RS11645	0.36	-2.8
2,648,107	+		DDA3937_RS11645	0.36	-0.5
2,648,108	-		DDA3937_RS11645	0.36	+0.1
2,648,108	-				-1.0
2,648,108	-		DDA3937_RS11645	0.36	-0.1
2,648,138	+		DDA3937_RS11645	0.41	+0.9
2,648,138	+		DDA3937_RS11645	0.41	+0.0
2,648,138	+		DDA3937_RS11645	0.41	+0.6
2,648,139	-		DDA3937_RS11645	0.41	-0.4
2,648,205	+		DDA3937_RS11645	0.51	-1.0
2,648,205	+		DDA3937_RS11645	0.51	-1.4
2,648,205	+		DDA3937_RS11645	0.51	-2.4
2,648,206	-		DDA3937_RS11645	0.51	-2.0
2,648,206	-		DDA3937_RS11645	0.51	-0.4
2,648,207	+		DDA3937_RS11645	0.52	-1.0
2,648,208	-		DDA3937_RS11645	0.52	+0.6
2,648,228	-		DDA3937_RS11645	0.55	+1.1
2,648,258	+		DDA3937_RS11645	0.60	-1.2
2,648,258	+		DDA3937_RS11645	0.60	-0.1
2,648,258	+		DDA3937_RS11645	0.60	-1.5
2,648,259	-		DDA3937_RS11645	0.60	-1.2
2,648,472	+				-0.7
2,648,472	+				-0.1
2,648,473	-				-0.4
2,648,476	+				-0.5
2,648,477	-				-1.2
2,648,503	+				+0.4
2,648,504	-				-2.0
2,648,549	+				-1.8
2,648,549	+				-0.6
2,648,550	-				-0.2
2,648,550	-				+0.9
2,648,608	+				-0.4
2,648,807	-		DDA3937_RS11650	0.18	+0.4
2,648,959	+		DDA3937_RS11650	0.28	-1.0
2,648,960	-		DDA3937_RS11650	0.28	+0.1
2,648,998	-		DDA3937_RS11650	0.31	+0.8
2,649,036	+		DDA3937_RS11650	0.33	-0.9
2,649,036	+		DDA3937_RS11650	0.33	-0.1
2,649,036	+		DDA3937_RS11650	0.33	+0.2
2,649,036	+		DDA3937_RS11650	0.33	+0.5
2,649,037	-		DDA3937_RS11650	0.33	-1.3
2,649,037	-		DDA3937_RS11650	0.33	+0.4
2,649,037	-		DDA3937_RS11650	0.33	+0.2
2,649,037	-		DDA3937_RS11650	0.33	-0.1
2,649,063	+		DDA3937_RS11650	0.35	-1.5
2,649,063	+		DDA3937_RS11650	0.35	+0.5
2,649,064	-				+1.2
2,649,389	-		DDA3937_RS11650	0.57	+1.1