Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS11075 and DDA3937_RS11080 overlap by 4 nucleotides DDA3937_RS11080 and DDA3937_RS11085 overlap by 4 nucleotides
DDA3937_RS11075: DDA3937_RS11075 - exodeoxyribonuclease V subunit alpha, at 2,498,288 to 2,500,333
_RS11075
DDA3937_RS11080: DDA3937_RS11080 - exodeoxyribonuclease V subunit beta, at 2,500,330 to 2,504,004
_RS11080
DDA3937_RS11085: DDA3937_RS11085 - exodeoxyribonuclease V subunit gamma, at 2,504,001 to 2,507,531
_RS11085
Position (kb)
2500
2501
2502
2503
2504
2505 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2500.307 kb on + strand at 2500.308 kb on - strand at 2500.308 kb on - strand at 2500.308 kb on - strand at 2500.325 kb on + strand at 2500.475 kb on + strand at 2500.638 kb on - strand at 2502.180 kb on - strand, within DDA3937_RS11080 at 2502.258 kb on + strand, within DDA3937_RS11080 at 2502.669 kb on - strand, within DDA3937_RS11080 at 2502.674 kb on + strand, within DDA3937_RS11080 at 2502.674 kb on + strand, within DDA3937_RS11080 at 2502.675 kb on - strand, within DDA3937_RS11080 at 2503.428 kb on + strand, within DDA3937_RS11080 at 2503.429 kb on - strand, within DDA3937_RS11080 at 2503.585 kb on - strand, within DDA3937_RS11080 at 2503.987 kb on + strand at 2503.988 kb on - strand at 2504.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,500,307 + -0.2 2,500,308 - -0.2 2,500,308 - +0.1 2,500,308 - +0.0 2,500,325 + +1.4 2,500,475 + -0.2 2,500,638 - -1.1 2,502,180 - DDA3937_RS11080 0.50 -0.4 2,502,258 + DDA3937_RS11080 0.52 -3.0 2,502,669 - DDA3937_RS11080 0.64 -0.1 2,502,674 + DDA3937_RS11080 0.64 +0.2 2,502,674 + DDA3937_RS11080 0.64 -0.9 2,502,675 - DDA3937_RS11080 0.64 -1.4 2,503,428 + DDA3937_RS11080 0.84 -0.4 2,503,429 - DDA3937_RS11080 0.84 -2.2 2,503,585 - DDA3937_RS11080 0.89 +0.6 2,503,987 + -1.2 2,503,988 - -0.5 2,504,024 + -0.4
Or see this region's nucleotide sequence