Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10500

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,362,550	+				+0.1
2,362,550	+				+0.4
2,362,550	+				-0.7
2,362,551	-				+0.6
2,362,631	+				-1.2
2,362,635	+				+0.5
2,362,711	+				-2.3
2,362,711	+				+0.3
2,362,711	+				+0.3
2,362,711	+				-0.3
2,362,711	+				-1.1
2,362,712	-				-0.4
2,362,712	-				-0.2
2,362,712	-				+0.4
2,362,712	-				-1.7
2,362,730	+				-1.2
2,362,730	+				-0.9
2,362,731	-				+0.0
2,362,732	+				-0.0
2,362,826	+		DDA3937_RS10495	0.18	+0.6
2,362,852	+		DDA3937_RS10495	0.22	+1.2
2,362,853	-		DDA3937_RS10495	0.22	-0.1
2,362,946	+		DDA3937_RS10495	0.37	-0.6
2,362,946	+		DDA3937_RS10495	0.37	-2.7
2,362,946	+		DDA3937_RS10495	0.37	+0.7
2,362,947	-		DDA3937_RS10495	0.37	-1.7
2,362,947	-		DDA3937_RS10495	0.37	+0.3
2,362,952	+		DDA3937_RS10495	0.38	-0.2
2,362,952	+		DDA3937_RS10495	0.38	-0.2
2,362,953	-		DDA3937_RS10495	0.38	+0.7
2,362,953	-		DDA3937_RS10495	0.38	+0.2
2,362,988	-		DDA3937_RS10495	0.44	-0.2
2,362,988	-		DDA3937_RS10495	0.44	-0.3
2,362,990	+		DDA3937_RS10495	0.44	-0.0
2,362,991	-		DDA3937_RS10495	0.44	-1.9
2,363,003	+		DDA3937_RS10495	0.46	+0.4
2,363,003	+		DDA3937_RS10495	0.46	-0.4
2,363,003	+		DDA3937_RS10495	0.46	-0.3
2,363,003	+		DDA3937_RS10495	0.46	+0.4
2,363,004	-		DDA3937_RS10495	0.47	-0.8
2,363,004	-		DDA3937_RS10495	0.47	-1.3
2,363,360	+				-0.6
2,363,370	+				+0.1
2,363,370	+				-0.9
2,363,370	+				-0.7
2,363,371	-				+0.1
2,363,371	-				-0.3
2,363,374	+				+0.9
2,363,375	-				+1.0
2,363,395	+				-1.3
2,363,396	-				-1.3
2,363,396	-				-0.6
2,363,396	-				-1.0
2,363,416	+				-0.2
2,363,419	-				-1.1
2,363,419	-				-0.2
2,363,592	+				-0.8
2,363,593	-				+0.1
2,363,593	-				+2.2
2,363,593	-				-2.5
2,363,613	+				-0.0
2,363,740	+				-0.3
2,363,740	+		DDA3937_RS10500	0.24	-0.1
2,363,740	+		DDA3937_RS10500	0.24	-0.7
2,363,740	+				+1.4
2,363,741	-		DDA3937_RS10500	0.24	-0.5
2,363,741	-		DDA3937_RS10500	0.24	-0.9
2,363,743	+		DDA3937_RS10500	0.24	-2.3
2,363,743	+		DDA3937_RS10500	0.24	-0.8
2,363,743	+		DDA3937_RS10500	0.24	-1.2
2,363,743	+		DDA3937_RS10500	0.24	-1.9
2,363,744	-		DDA3937_RS10500	0.24	+0.7
2,363,744	-		DDA3937_RS10500	0.24	+0.1
2,363,744	-		DDA3937_RS10500	0.24	-0.7
2,363,862	+				+0.7
2,363,862	+		DDA3937_RS10500	0.38	+1.9
2,363,862	+		DDA3937_RS10500	0.38	-2.3
2,363,862	+		DDA3937_RS10500	0.38	-0.3
2,363,879	+		DDA3937_RS10500	0.40	-0.3
2,363,879	+		DDA3937_RS10500	0.40	-0.7
2,363,879	+		DDA3937_RS10500	0.40	-1.7
2,363,883	+		DDA3937_RS10500	0.40	+0.1
2,363,944	+				-2.2
2,363,944	+		DDA3937_RS10500	0.47	+0.0
2,364,005	+		DDA3937_RS10500	0.54	-1.7
2,364,006	-		DDA3937_RS10500	0.54	-0.4
2,364,006	-		DDA3937_RS10500	0.54	-2.0
2,364,076	+		DDA3937_RS10500	0.62	-0.7
2,364,076	+		DDA3937_RS10500	0.62	-0.3
2,364,076	+		DDA3937_RS10500	0.62	-0.7
2,364,113	+		DDA3937_RS10500	0.66	-0.9
2,364,113	+		DDA3937_RS10500	0.66	-1.2
2,364,114	-		DDA3937_RS10500	0.66	-2.2
2,364,237	+		DDA3937_RS10500	0.80	-0.2
2,364,238	-		DDA3937_RS10500	0.80	-1.3
2,364,238	-		DDA3937_RS10500	0.80	-2.3
2,364,241	+		DDA3937_RS10500	0.80	+0.7
2,364,241	+		DDA3937_RS10500	0.80	-0.2
2,364,242	-		DDA3937_RS10500	0.80	-2.3
2,364,425	+				-1.2
2,364,425	+				-0.1
2,364,426	-				-2.2
2,364,426	-				-0.2
2,364,477	+				-1.3
2,364,478	-				-0.5
2,364,478	-				-1.9
2,364,517	-				-0.1
2,364,669	-		DDA3937_RS10505	0.31	+0.4
2,364,669	-		DDA3937_RS10505	0.31	+0.2
2,364,686	+		DDA3937_RS10505	0.34	-0.3
2,364,686	+		DDA3937_RS10505	0.34	-0.2
2,364,686	+		DDA3937_RS10505	0.34	+0.7
2,364,686	+		DDA3937_RS10505	0.34	+0.4
2,364,686	+		DDA3937_RS10505	0.34	+0.6
2,364,687	-		DDA3937_RS10505	0.34	-0.4
2,364,687	-		DDA3937_RS10505	0.34	-0.2
2,364,687	-		DDA3937_RS10505	0.34	+1.1
2,364,687	-		DDA3937_RS10505	0.34	-1.8
2,364,687	-				+1.0
2,364,687	-		DDA3937_RS10505	0.34	+0.9
2,364,739	+		DDA3937_RS10505	0.43	-1.2
2,364,739	+		DDA3937_RS10505	0.43	-0.2
2,364,739	+		DDA3937_RS10505	0.43	-0.7
2,364,739	+		DDA3937_RS10505	0.43	-0.9
2,364,805	-		DDA3937_RS10505	0.54	-1.5
2,364,885	+		DDA3937_RS10505	0.67	-0.2
2,364,885	+		DDA3937_RS10505	0.67	-0.5
2,365,177	+		DDA3937_RS10510	0.10	-0.1
2,365,177	+		DDA3937_RS10510	0.10	-0.9
2,365,177	+		DDA3937_RS10510	0.10	-0.0
2,365,178	-		DDA3937_RS10510	0.10	+0.9
2,365,178	-		DDA3937_RS10510	0.10	+0.8
2,365,178	-		DDA3937_RS10510	0.10	+0.2
2,365,181	+		DDA3937_RS10510	0.11	-0.3
2,365,181	+		DDA3937_RS10510	0.11	-0.4
2,365,187	+		DDA3937_RS10510	0.12	-0.1
2,365,221	+		DDA3937_RS10510	0.16	+0.7
2,365,298	-		DDA3937_RS10510	0.26	+0.4
2,365,313	+				+0.3
2,365,314	-		DDA3937_RS10510	0.28	+0.3
2,365,328	-		DDA3937_RS10510	0.30	+1.4
2,365,367	+		DDA3937_RS10510	0.35	-0.9