Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10440

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,350,548	+				-0.2
2,350,548	+				-1.2
2,350,549	-				+0.4
2,350,549	-				-1.7
2,350,568	+				-1.7
2,350,569	-				+0.1
2,350,569	-				+0.2
2,350,593	+				-0.6
2,350,594	-				-0.3
2,350,594	-				+0.2
2,350,594	-				-1.3
2,350,692	+		DDA3937_RS10435	0.13	-2.4
2,350,693	-		DDA3937_RS10435	0.13	+0.7
2,350,959	-		DDA3937_RS10435	0.60	+2.2
2,351,070	+		DDA3937_RS10435	0.80	-0.1
2,351,198	+				-1.7
2,351,242	+				-1.7
2,351,253	+				+0.2
2,351,287	+				-0.9
2,351,310	+				-1.1
2,351,315	+				-1.0
2,351,350	+				+0.5
2,351,350	+				+0.3
2,351,351	-				-0.3
2,351,360	+				-0.4
2,351,365	+				-2.2
2,351,365	+				-0.3
2,351,394	-				-0.3
2,351,394	-				-0.2
2,351,404	+				-1.1
2,351,404	+				+1.1
2,351,404	+				+1.0
2,351,404	+				+0.2
2,351,405	-				-3.5
2,351,405	-				+0.7
2,351,408	+				-1.2
2,351,408	+				+0.7
2,351,408	+				-0.7
2,351,409	-				+0.7
2,351,409	-				-0.9
2,351,409	-				-0.3
2,351,409	-				-0.6
2,351,409	-				-0.6
2,351,436	+				-0.4
2,351,436	+				-0.9
2,351,439	+				+0.1
2,351,440	-				-0.3
2,351,688	+		DDA3937_RS10440	0.42	-1.9
2,351,693	-		DDA3937_RS10440	0.42	-0.9
2,351,845	+		DDA3937_RS10440	0.63	-0.7
2,351,977	+		DDA3937_RS10440	0.80	+0.3
2,351,977	+		DDA3937_RS10440	0.80	-0.1
2,351,978	-		DDA3937_RS10440	0.80	-0.3
2,351,978	-		DDA3937_RS10440	0.80	-1.0
2,352,003	+		DDA3937_RS10440	0.84	-0.7
2,352,004	-		DDA3937_RS10440	0.84	-0.8
2,352,004	-		DDA3937_RS10440	0.84	-1.3
2,352,101	+				-0.9
2,352,103	+				-0.3
2,352,104	-				-0.3
2,352,104	-				-2.5
2,352,154	-				-0.5
2,352,162	+				-0.6
2,352,163	-				-0.8
2,352,389	-		DDA3937_RS22220	0.40	-0.1
2,352,445	+				+2.2
2,352,446	-		DDA3937_RS22220	0.55	-0.1
2,352,540	+		DDA3937_RS22220	0.81	+0.2
2,352,540	+		DDA3937_RS22220	0.81	-2.5
2,352,607	+				+1.9
2,352,607	+				-0.9
2,352,607	+				+1.7
2,352,607	+				-0.5
2,352,608	-				+0.2
2,352,662	+		DDA3937_RS10445	0.17	-0.5
2,352,699	-		DDA3937_RS10445	0.36	-0.2
2,352,757	-		DDA3937_RS10445	0.65	-1.6
2,352,787	+		DDA3937_RS10445	0.80	-0.9
2,352,788	-		DDA3937_RS10445	0.80	-0.2
2,352,788	-		DDA3937_RS10445	0.80	-0.0
2,352,843	-				-0.8
2,352,851	+				-0.2
2,352,852	-				+0.1
2,353,044	+		DDA3937_RS10450	0.24	+0.4
2,353,044	+		DDA3937_RS10450	0.24	+0.5
2,353,044	+		DDA3937_RS10450	0.24	-0.9
2,353,044	+		DDA3937_RS10450	0.24	-0.2
2,353,045	-		DDA3937_RS10450	0.24	+0.4
2,353,048	+		DDA3937_RS10450	0.25	-1.0
2,353,048	+		DDA3937_RS10450	0.25	-0.9
2,353,048	+		DDA3937_RS10450	0.25	-0.0
2,353,049	-		DDA3937_RS10450	0.25	-2.3
2,353,049	-		DDA3937_RS10450	0.25	-0.7
2,353,054	+		DDA3937_RS10450	0.26	-0.8
2,353,079	+		DDA3937_RS10450	0.30	-1.3
2,353,080	-		DDA3937_RS10450	0.30	-1.9
2,353,080	-		DDA3937_RS10450	0.30	-0.0
2,353,080	-		DDA3937_RS10450	0.30	-1.2
2,353,080	-		DDA3937_RS10450	0.30	+0.7