Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09935

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,245,271	-		DDA3937_RS09930	0.56	-0.5
2,245,274	-		DDA3937_RS09930	0.56	+0.7
2,245,278	+		DDA3937_RS09930	0.57	-0.2
2,245,344	+		DDA3937_RS09930	0.67	+0.0
2,245,345	-		DDA3937_RS09930	0.67	+0.3
2,245,345	-		DDA3937_RS09930	0.67	+0.3
2,245,377	+		DDA3937_RS09930	0.72	-0.1
2,245,378	-		DDA3937_RS09930	0.73	-0.3
2,245,449	+		DDA3937_RS09930	0.84	-1.6
2,245,450	-				+0.7
2,245,450	-		DDA3937_RS09930	0.84	-0.2
2,245,450	-		DDA3937_RS09930	0.84	-1.7
2,245,452	+		DDA3937_RS09930	0.84	+0.3
2,245,452	+		DDA3937_RS09930	0.84	-0.3
2,245,460	+		DDA3937_RS09930	0.85	-0.4
2,245,460	+		DDA3937_RS09930	0.85	-0.1
2,245,461	-				-0.9
2,245,552	+				+1.7
2,245,552	+				-0.6
2,245,552	+				+0.4
2,245,568	+				+0.0
2,245,568	+				-0.8
2,245,569	-				-0.6
2,245,569	-				-2.3
2,245,569	-				+1.0
2,245,569	-				-0.9
2,245,569	-				+0.4
2,245,569	-				+0.9
2,245,569	-				-0.3
2,245,569	-				-1.9
2,245,569	-				-0.1
2,245,570	+				-0.6
2,245,570	+				+0.1
2,245,633	+				-1.6
2,245,633	+				-0.9
2,245,661	-				+0.0
2,245,714	-				+0.1
2,245,752	+				-0.3
2,245,752	+				+0.4
2,245,755	+				+1.1
2,245,760	+				-0.5
2,245,761	-				-1.9
2,245,860	+				+0.7
2,245,861	-				-0.5
2,245,913	+				-0.2
2,245,917	+				+0.7
2,245,917	+				-0.6
2,245,917	+				+1.7
2,245,930	+				-0.2
2,245,930	+				+0.7
2,245,930	+				+0.7
2,245,930	+				-0.7
2,245,983	-				-0.8
2,246,033	-				-1.9
2,246,101	-		DDA3937_RS23150	0.50	+0.5
2,246,110	-		DDA3937_RS23150	0.57	-0.9
2,246,179	-				-0.1
2,246,267	+				+0.1
2,246,267	+				-0.0
2,246,267	+				+0.7
2,246,268	-				+0.2
2,246,268	-				-0.3
2,246,290	-		DDA3937_RS09935	0.11	+0.7
2,246,290	-		DDA3937_RS09935	0.11	+1.0
2,246,414	+		DDA3937_RS09935	0.32	-1.1
2,246,433	-		DDA3937_RS09935	0.35	+1.8
2,246,465	+		DDA3937_RS09935	0.40	-0.1
2,246,465	+		DDA3937_RS09935	0.40	+0.4
2,246,465	+		DDA3937_RS09935	0.40	+0.1
2,246,465	+		DDA3937_RS09935	0.40	-0.0
2,246,466	-		DDA3937_RS09935	0.40	+0.5
2,246,466	-		DDA3937_RS09935	0.40	+0.8
2,246,660	+		DDA3937_RS09935	0.72	+0.2
2,246,660	+		DDA3937_RS09935	0.72	+1.3
2,246,693	+		DDA3937_RS09935	0.78	-0.5
2,246,694	-		DDA3937_RS09935	0.78	-0.9
2,246,694	-		DDA3937_RS09935	0.78	-0.1
2,246,694	-		DDA3937_RS09935	0.78	-1.8
2,246,782	+				-0.7
2,246,783	-				+0.9
2,246,783	-				-0.6
2,246,783	-				+0.5
2,246,973	-				+1.9
2,246,984	+				-0.3
2,246,985	-				-0.9
2,246,985	-				+0.4
2,246,985	-				-0.7
2,246,993	+				-0.2
2,246,994	-				+0.7
2,247,109	+		DDA3937_RS09940	0.13	-1.3
2,247,109	+		DDA3937_RS09940	0.13	-0.5
2,247,109	+		DDA3937_RS09940	0.13	-0.1
2,247,110	-		DDA3937_RS09940	0.13	-0.5
2,247,163	-		DDA3937_RS09940	0.21	-1.3
2,247,285	+		DDA3937_RS09940	0.37	-0.2
2,247,286	-		DDA3937_RS09940	0.37	+0.2
2,247,340	+		DDA3937_RS09940	0.44	-0.7
2,247,437	+		DDA3937_RS09940	0.57	+0.7
2,247,438	-		DDA3937_RS09940	0.57	+0.7
2,247,504	+		DDA3937_RS09940	0.66	-0.3
2,247,505	-		DDA3937_RS09940	0.66	+0.0
2,247,572	+		DDA3937_RS09940	0.75	-0.5
2,247,572	+		DDA3937_RS09940	0.75	-0.9
2,247,572	+		DDA3937_RS09940	0.75	-0.2
2,247,572	+		DDA3937_RS09940	0.75	+0.5
2,247,572	+		DDA3937_RS09940	0.75	-0.3
2,247,572	+		DDA3937_RS09940	0.75	+0.8
2,247,572	+		DDA3937_RS09940	0.75	+1.3
2,247,573	-		DDA3937_RS09940	0.75	-0.4
2,247,573	-		DDA3937_RS09940	0.75	+0.7
2,247,573	-		DDA3937_RS09940	0.75	-1.3
2,247,573	-		DDA3937_RS09940	0.75	-0.5
2,247,573	-		DDA3937_RS09940	0.75	-0.2
2,247,573	-		DDA3937_RS09940	0.75	-1.0
2,247,573	-		DDA3937_RS09940	0.75	-0.7
2,247,573	-		DDA3937_RS09940	0.75	-0.1
2,247,574	+		DDA3937_RS09940	0.75	+0.7
2,247,575	-		DDA3937_RS09940	0.75	+0.4
2,247,631	+		DDA3937_RS09940	0.82	+0.2
2,247,687	+		DDA3937_RS09940	0.90	+0.2
2,247,687	+		DDA3937_RS09940	0.90	-2.1
2,247,688	-				-0.9
2,247,688	-				-0.9
2,247,718	+				-0.6
2,247,744	+				-1.2
2,247,751	+				+2.1
2,247,773	+				+0.7
2,247,774	-				+0.3
2,247,777	+				+1.1
2,247,778	-				+2.7
2,247,778	-				+0.0
2,247,789	+				+0.2
2,247,790	-				+0.4
2,247,790	-				-0.0
2,247,790	-				-0.9
2,247,790	-				+0.1