Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09490

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,137,011	+		DDA3937_RS09485	0.26	-0.2
2,137,017	-		DDA3937_RS09485	0.26	-0.9
2,137,017	-		DDA3937_RS09485	0.26	+1.1
2,137,054	+		DDA3937_RS09485	0.30	-1.5
2,137,055	-		DDA3937_RS09485	0.30	-2.1
2,137,087	+		DDA3937_RS09485	0.33	-1.3
2,137,087	+		DDA3937_RS09485	0.33	-1.6
2,137,088	-		DDA3937_RS09485	0.33	+1.7
2,137,190	+		DDA3937_RS09485	0.42	+1.7
2,137,190	+		DDA3937_RS09485	0.42	-0.9
2,137,191	-		DDA3937_RS09485	0.42	-0.7
2,137,327	+		DDA3937_RS09485	0.54	-0.3
2,137,327	+		DDA3937_RS09485	0.54	-1.6
2,137,327	+		DDA3937_RS09485	0.54	+1.3
2,137,328	-		DDA3937_RS09485	0.54	-0.1
2,137,328	-		DDA3937_RS09485	0.54	-1.9
2,137,328	-		DDA3937_RS09485	0.54	-1.1
2,137,328	-		DDA3937_RS09485	0.54	-1.2
2,137,381	+		DDA3937_RS09485	0.59	+0.9
2,137,381	+		DDA3937_RS09485	0.59	+0.1
2,137,381	+		DDA3937_RS09485	0.59	+0.1
2,137,381	+		DDA3937_RS09485	0.59	+0.1
2,137,382	-		DDA3937_RS09485	0.59	-0.6
2,137,382	-		DDA3937_RS09485	0.59	-0.1
2,137,382	-		DDA3937_RS09485	0.59	-1.7
2,137,382	-				-0.3
2,137,382	-		DDA3937_RS09485	0.59	+0.7
2,137,676	-		DDA3937_RS09485	0.85	+1.0
2,137,700	-		DDA3937_RS09485	0.87	+0.1
2,137,700	-		DDA3937_RS09485	0.87	-0.3
2,137,708	+		DDA3937_RS09485	0.88	-0.5
2,137,708	+				-0.9
2,137,709	-		DDA3937_RS09485	0.88	+0.7
2,137,709	-		DDA3937_RS09485	0.88	-0.7
2,137,709	-		DDA3937_RS09485	0.88	-1.5
2,137,743	+				-0.4
2,137,743	+				-0.1
2,137,744	-				+0.3
2,137,763	-				+1.1
2,137,769	+				+0.4
2,137,770	-				-1.7
2,137,770	-				-1.2
2,137,791	+				+0.2
2,137,792	-				-0.7
2,137,792	-				+0.1
2,137,792	-				-0.2
2,137,792	-				-1.1
2,137,814	-				-0.7
2,137,814	-				-0.3
2,137,814	-				-1.1
2,137,814	-				-0.9
2,137,934	+				-0.6
2,138,011	+		DDA3937_RS09490	0.13	+0.2
2,138,107	+		DDA3937_RS09490	0.21	-0.1
2,138,108	-		DDA3937_RS09490	0.21	+1.1
2,138,108	-		DDA3937_RS09490	0.21	-1.7
2,138,108	-		DDA3937_RS09490	0.21	+0.2
2,138,108	-		DDA3937_RS09490	0.21	+0.4
2,138,131	+		DDA3937_RS09490	0.23	+0.3
2,138,134	+		DDA3937_RS09490	0.23	+1.3
2,138,211	+		DDA3937_RS09490	0.29	-0.5
2,138,211	+				+0.7
2,138,212	-		DDA3937_RS09490	0.29	+0.2
2,138,352	+		DDA3937_RS09490	0.41	+1.0
2,138,367	+		DDA3937_RS09490	0.42	-1.6
2,138,367	+		DDA3937_RS09490	0.42	-0.2
2,138,367	+		DDA3937_RS09490	0.42	-0.1
2,138,368	-		DDA3937_RS09490	0.42	-0.2
2,138,368	-		DDA3937_RS09490	0.42	-1.0
2,138,419	+		DDA3937_RS09490	0.47	+0.9
2,138,419	+		DDA3937_RS09490	0.47	+0.7
2,138,419	+		DDA3937_RS09490	0.47	+0.7
2,138,420	-		DDA3937_RS09490	0.47	-0.2
2,138,420	-		DDA3937_RS09490	0.47	-0.9
2,138,563	+		DDA3937_RS09490	0.59	-0.7
2,138,563	+		DDA3937_RS09490	0.59	-0.7
2,138,563	+		DDA3937_RS09490	0.59	+0.4
2,138,569	+		DDA3937_RS09490	0.59	-0.1
2,138,795	+		DDA3937_RS09490	0.78	+0.5
2,138,831	+		DDA3937_RS09490	0.81	+1.3
2,139,101	+				+1.2
2,139,101	+				+1.7
2,139,126	-				+1.6
2,139,129	+				-0.7
2,139,130	-				+0.1
2,139,231	-				+0.1
2,139,231	-				-1.9
2,139,231	-				+1.3
2,139,266	+				-0.9
2,139,534	+		DDA3937_RS09495	0.41	-0.6
2,139,535	-		DDA3937_RS09495	0.41	+1.4
2,139,535	-		DDA3937_RS09495	0.41	-0.1
2,139,653	+		DDA3937_RS09495	0.57	-0.6
2,139,653	+		DDA3937_RS09495	0.57	-1.0
2,139,653	+		DDA3937_RS09495	0.57	-0.5
2,139,653	+		DDA3937_RS09495	0.57	+0.8
2,139,653	+		DDA3937_RS09495	0.57	+0.1
2,139,653	+		DDA3937_RS09495	0.57	+0.5
2,139,653	+		DDA3937_RS09495	0.57	-0.7
2,139,653	+		DDA3937_RS09495	0.57	-0.2
2,139,653	+		DDA3937_RS09495	0.57	+0.2
2,139,653	+		DDA3937_RS09495	0.57	+1.9
2,139,653	+		DDA3937_RS09495	0.57	-0.6
2,139,653	+		DDA3937_RS09495	0.57	-0.1
2,139,653	+		DDA3937_RS09495	0.57	-0.3
2,139,654	-		DDA3937_RS09495	0.57	-1.5
2,139,654	-		DDA3937_RS09495	0.57	+1.3
2,139,654	-		DDA3937_RS09495	0.57	-0.7
2,139,654	-		DDA3937_RS09495	0.57	-0.8
2,139,654	-		DDA3937_RS09495	0.57	+0.8
2,139,712	-		DDA3937_RS09495	0.64	-0.0
2,139,722	+		DDA3937_RS09495	0.66	+0.3
2,139,777	+		DDA3937_RS09495	0.73	-0.2
2,139,777	+		DDA3937_RS09495	0.73	-0.9
2,139,777	+		DDA3937_RS09495	0.73	-1.1
2,139,777	+		DDA3937_RS09495	0.73	+0.4
2,139,777	+		DDA3937_RS09495	0.73	-0.3
2,139,778	-		DDA3937_RS09495	0.73	-0.2
2,139,778	-		DDA3937_RS09495	0.73	-0.2
2,139,778	-				+2.7
2,139,778	-		DDA3937_RS09495	0.73	-0.2
2,139,790	+		DDA3937_RS09495	0.75	+0.7
2,139,790	+		DDA3937_RS09495	0.75	-0.1
2,139,791	-		DDA3937_RS09495	0.75	-0.2
2,139,872	+		DDA3937_RS09495	0.86	+1.7
2,139,998	+				-0.1
2,139,999	-				-0.2
2,140,004	+				+0.9