Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09285

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,088,171	-		DDA3937_RS09280	0.44	+0.4
2,088,187	+		DDA3937_RS09280	0.45	+0.4
2,088,187	+		DDA3937_RS09280	0.45	-0.1
2,088,187	+		DDA3937_RS09280	0.45	+0.3
2,088,187	+		DDA3937_RS09280	0.45	+1.4
2,088,188	-		DDA3937_RS09280	0.45	-1.7
2,088,188	-		DDA3937_RS09280	0.45	+0.4
2,088,188	-		DDA3937_RS09280	0.45	-2.6
2,088,188	-		DDA3937_RS09280	0.45	-1.3
2,088,188	-		DDA3937_RS09280	0.45	-0.1
2,088,188	-		DDA3937_RS09280	0.45	-0.5
2,088,188	-		DDA3937_RS09280	0.45	+0.4
2,088,188	-		DDA3937_RS09280	0.45	-0.0
2,088,188	-		DDA3937_RS09280	0.45	-0.1
2,088,188	-		DDA3937_RS09280	0.45	-0.6
2,088,188	-		DDA3937_RS09280	0.45	-2.1
2,088,188	-		DDA3937_RS09280	0.45	-0.7
2,088,188	-		DDA3937_RS09280	0.45	-0.2
2,088,202	-		DDA3937_RS09280	0.46	-0.2
2,088,202	-		DDA3937_RS09280	0.46	+0.3
2,088,202	-		DDA3937_RS09280	0.46	-0.8
2,088,217	-		DDA3937_RS09280	0.47	-0.4
2,088,389	+		DDA3937_RS09280	0.56	+0.1
2,088,389	+		DDA3937_RS09280	0.56	-0.1
2,088,389	+				-1.3
2,088,390	-		DDA3937_RS09280	0.56	-1.2
2,088,390	-		DDA3937_RS09280	0.56	-2.3
2,088,390	-		DDA3937_RS09280	0.56	-0.1
2,088,563	+		DDA3937_RS09280	0.66	-1.3
2,088,564	-		DDA3937_RS09280	0.66	-0.6
2,088,579	+		DDA3937_RS09280	0.67	+0.7
2,088,579	+		DDA3937_RS09280	0.67	-0.8
2,088,579	+		DDA3937_RS09280	0.67	-0.1
2,088,666	-		DDA3937_RS09280	0.72	-0.5
2,088,716	-		DDA3937_RS09280	0.75	-0.2
2,088,734	+		DDA3937_RS09280	0.76	+0.7
2,088,734	+				+0.7
2,088,774	+		DDA3937_RS09280	0.78	-0.8
2,088,775	-		DDA3937_RS09280	0.78	+0.1
2,088,804	-		DDA3937_RS09280	0.80	+1.0
2,088,961	+		DDA3937_RS09280	0.89	-0.2
2,088,961	+		DDA3937_RS09280	0.89	-0.0
2,089,066	+				+0.8
2,089,067	-				+0.7
2,089,067	-				+0.1
2,089,067	-				-0.5
2,089,073	+				-0.4
2,089,073	+				+1.0
2,089,073	+				+0.9
2,089,073	+				+0.4
2,089,074	-				-1.0
2,089,074	-				-0.0
2,089,121	+				-0.1
2,089,122	-				-0.3
2,089,125	-				-1.8
2,089,171	+				-0.6
2,089,180	+				+1.4
2,089,181	-		DDA3937_RS09285	0.11	-1.1
2,089,271	+		DDA3937_RS09285	0.49	-1.5
2,089,271	+		DDA3937_RS09285	0.49	-1.3
2,089,326	+		DDA3937_RS09285	0.72	-0.7
2,089,326	+		DDA3937_RS09285	0.72	-0.2
2,089,327	-		DDA3937_RS09285	0.72	+0.0
2,089,355	+		DDA3937_RS09285	0.84	+0.9
2,089,355	+		DDA3937_RS09285	0.84	-0.9
2,089,356	-		DDA3937_RS09285	0.84	-1.2
2,089,356	-		DDA3937_RS09285	0.84	-0.7
2,089,518	-		DDA3937_RS09290	0.20	+0.3
2,089,665	+		DDA3937_RS09290	0.39	+0.5
2,089,666	-		DDA3937_RS09290	0.39	+0.8
2,089,666	-		DDA3937_RS09290	0.39	+0.3
2,089,666	-		DDA3937_RS09290	0.39	-0.4
2,089,666	-		DDA3937_RS09290	0.39	-1.3
2,089,666	-		DDA3937_RS09290	0.39	-0.9
2,089,685	+		DDA3937_RS09290	0.42	-0.5
2,089,696	+		DDA3937_RS09290	0.44	+0.1
2,089,764	+		DDA3937_RS09290	0.53	-0.2
2,089,765	-		DDA3937_RS09290	0.53	-0.6
2,089,765	-		DDA3937_RS09290	0.53	-0.3
2,089,765	-		DDA3937_RS09290	0.53	+1.7
2,089,781	+		DDA3937_RS09290	0.55	-0.8
2,089,781	+		DDA3937_RS09290	0.55	-0.1
2,089,782	-		DDA3937_RS09290	0.55	-1.0
2,089,910	+		DDA3937_RS09290	0.72	+0.2
2,089,940	+		DDA3937_RS09290	0.76	+0.1
2,089,940	+		DDA3937_RS09290	0.76	-0.8
2,090,230	+		DDA3937_RS09295	0.11	+1.5
2,090,231	-		DDA3937_RS09295	0.11	-0.5
2,090,231	-		DDA3937_RS09295	0.11	-0.1
2,090,390	+		DDA3937_RS09295	0.26	+0.1
2,090,392	+		DDA3937_RS09295	0.26	-0.3
2,090,392	+		DDA3937_RS09295	0.26	-0.9
2,090,393	-		DDA3937_RS09295	0.26	+0.4