Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS23075 and DDA3937_RS06770 are separated by 127 nucleotides DDA3937_RS06770 and DDA3937_RS06775 overlap by 4 nucleotides
DDA3937_RS23075: DDA3937_RS23075 - hypothetical protein, at 1,513,861 to 1,515,339
_RS23075
DDA3937_RS06770: DDA3937_RS06770 - oligosaccharide flippase family protein, at 1,515,467 to 1,516,738
_RS06770
DDA3937_RS06775: DDA3937_RS06775 - glycosyltransferase family 2 protein, at 1,516,735 to 1,517,733
_RS06775
Position (kb)
1515
1516
1517 Strain fitness (log2 ratio)
-2
-1
0
1 at 1514.561 kb on - strand, within DDA3937_RS23075 at 1514.627 kb on + strand, within DDA3937_RS23075 at 1514.789 kb on - strand, within DDA3937_RS23075 at 1514.906 kb on - strand, within DDA3937_RS23075 at 1515.067 kb on - strand, within DDA3937_RS23075 at 1515.276 kb on + strand at 1515.337 kb on + strand at 1515.360 kb on + strand at 1515.446 kb on + strand at 1515.459 kb on + strand at 1515.600 kb on - strand, within DDA3937_RS06770 at 1515.630 kb on + strand, within DDA3937_RS06770 at 1515.747 kb on + strand, within DDA3937_RS06770 at 1516.182 kb on - strand, within DDA3937_RS06770 at 1516.237 kb on + strand, within DDA3937_RS06770 at 1516.689 kb on + strand at 1516.698 kb on + strand at 1516.758 kb on + strand at 1516.759 kb on - strand at 1517.095 kb on + strand, within DDA3937_RS06775 at 1517.319 kb on + strand, within DDA3937_RS06775 at 1517.554 kb on + strand, within DDA3937_RS06775
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,514,561 - DDA3937_RS23075 0.47 -0.1 1,514,627 + DDA3937_RS23075 0.52 -0.5 1,514,789 - DDA3937_RS23075 0.63 -0.6 1,514,906 - DDA3937_RS23075 0.71 +1.4 1,515,067 - DDA3937_RS23075 0.82 -0.6 1,515,276 + -0.0 1,515,337 + -0.6 1,515,360 + +0.2 1,515,446 + -1.5 1,515,459 + -0.6 1,515,600 - DDA3937_RS06770 0.10 -0.1 1,515,630 + DDA3937_RS06770 0.13 -1.7 1,515,747 + DDA3937_RS06770 0.22 -0.7 1,516,182 - DDA3937_RS06770 0.56 -0.9 1,516,237 + DDA3937_RS06770 0.61 -0.1 1,516,689 + -2.3 1,516,698 + +0.9 1,516,758 + +0.6 1,516,759 - -1.0 1,517,095 + DDA3937_RS06775 0.36 -1.8 1,517,319 + DDA3937_RS06775 0.58 +0.9 1,517,554 + DDA3937_RS06775 0.82 -0.6
Or see this region's nucleotide sequence