Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS06690 and DDA3937_RS06695 are separated by 101 nucleotides DDA3937_RS06695 and DDA3937_RS06700 are separated by 32 nucleotides DDA3937_RS06700 and DDA3937_RS06705 are separated by 84 nucleotides
DDA3937_RS06690: DDA3937_RS06690 - uridine kinase, at 1,493,054 to 1,493,695
_RS06690
DDA3937_RS06695: DDA3937_RS06695 - dCTP deaminase, at 1,493,797 to 1,494,378
_RS06695
DDA3937_RS06700: DDA3937_RS06700 - outer membrane assembly protein AsmA, at 1,494,411 to 1,496,225
_RS06700
DDA3937_RS06705: DDA3937_RS06705 - TerC family protein, at 1,496,310 to 1,497,899
_RS06705
Position (kb) 1494
1495
1496
1497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1493.555 kb on + strand, within DDA3937_RS06690 at 1493.555 kb on + strand, within DDA3937_RS06690 at 1493.555 kb on + strand, within DDA3937_RS06690 at 1493.555 kb on + strand, within DDA3937_RS06690 at 1493.555 kb on + strand, within DDA3937_RS06690 at 1493.555 kb on + strand, within DDA3937_RS06690 at 1493.555 kb on + strand, within DDA3937_RS06690 at 1493.556 kb on - strand, within DDA3937_RS06690 at 1493.556 kb on - strand, within DDA3937_RS06690 at 1493.556 kb on - strand, within DDA3937_RS06690 at 1493.556 kb on - strand, within DDA3937_RS06690 at 1493.556 kb on - strand, within DDA3937_RS06690 at 1493.609 kb on + strand, within DDA3937_RS06690 at 1493.609 kb on + strand, within DDA3937_RS06690 at 1493.610 kb on - strand, within DDA3937_RS06690 at 1493.660 kb on - strand at 1493.694 kb on - strand at 1493.700 kb on + strand at 1493.721 kb on + strand at 1493.721 kb on + strand at 1493.722 kb on - strand at 1493.722 kb on - strand at 1493.722 kb on - strand at 1493.740 kb on - strand at 1493.740 kb on - strand at 1493.740 kb on - strand at 1494.099 kb on + strand, within DDA3937_RS06695 at 1494.215 kb on - strand, within DDA3937_RS06695 at 1494.253 kb on - strand, within DDA3937_RS06695 at 1494.253 kb on - strand, within DDA3937_RS06695 at 1494.307 kb on + strand, within DDA3937_RS06695 at 1494.308 kb on - strand, within DDA3937_RS06695 at 1494.308 kb on - strand, within DDA3937_RS06695 at 1494.308 kb on - strand, within DDA3937_RS06695 at 1494.308 kb on - strand, within DDA3937_RS06695 at 1494.308 kb on - strand, within DDA3937_RS06695 at 1494.309 kb on + strand, within DDA3937_RS06695 at 1494.331 kb on + strand at 1494.331 kb on + strand at 1494.332 kb on - strand at 1494.376 kb on + strand at 1494.449 kb on - strand at 1494.510 kb on + strand at 1494.510 kb on + strand at 1494.510 kb on + strand at 1494.510 kb on + strand at 1494.511 kb on - strand at 1494.511 kb on - strand at 1494.511 kb on - strand at 1494.512 kb on + strand at 1494.512 kb on + strand at 1494.512 kb on + strand at 1494.512 kb on + strand at 1494.513 kb on - strand at 1494.513 kb on - strand at 1494.513 kb on - strand at 1495.038 kb on + strand, within DDA3937_RS06700 at 1495.038 kb on + strand, within DDA3937_RS06700 at 1495.039 kb on - strand, within DDA3937_RS06700 at 1495.077 kb on + strand, within DDA3937_RS06700 at 1495.143 kb on + strand, within DDA3937_RS06700 at 1495.196 kb on + strand, within DDA3937_RS06700 at 1495.248 kb on + strand, within DDA3937_RS06700 at 1495.248 kb on + strand, within DDA3937_RS06700 at 1495.248 kb on + strand, within DDA3937_RS06700 at 1495.249 kb on - strand, within DDA3937_RS06700 at 1495.249 kb on - strand, within DDA3937_RS06700 at 1495.249 kb on - strand, within DDA3937_RS06700 at 1495.249 kb on - strand, within DDA3937_RS06700 at 1495.249 kb on - strand, within DDA3937_RS06700 at 1495.249 kb on - strand, within DDA3937_RS06700 at 1495.386 kb on + strand, within DDA3937_RS06700 at 1495.386 kb on + strand, within DDA3937_RS06700 at 1495.387 kb on - strand, within DDA3937_RS06700 at 1495.434 kb on + strand, within DDA3937_RS06700 at 1495.434 kb on + strand, within DDA3937_RS06700 at 1495.434 kb on - strand, within DDA3937_RS06700 at 1495.434 kb on - strand, within DDA3937_RS06700 at 1495.451 kb on + strand, within DDA3937_RS06700 at 1495.854 kb on + strand, within DDA3937_RS06700 at 1495.855 kb on - strand, within DDA3937_RS06700 at 1495.997 kb on + strand, within DDA3937_RS06700 at 1495.998 kb on - strand, within DDA3937_RS06700 at 1495.998 kb on - strand, within DDA3937_RS06700 at 1496.067 kb on - strand at 1496.355 kb on + strand at 1496.355 kb on + strand at 1496.355 kb on + strand at 1496.356 kb on - strand at 1496.356 kb on - strand at 1496.356 kb on - strand at 1496.402 kb on + strand at 1496.403 kb on - strand at 1496.449 kb on + strand at 1496.450 kb on - strand at 1496.450 kb on - strand at 1496.479 kb on + strand, within DDA3937_RS06705 at 1496.480 kb on - strand, within DDA3937_RS06705 at 1496.480 kb on - strand, within DDA3937_RS06705 at 1496.480 kb on - strand, within DDA3937_RS06705 at 1496.497 kb on - strand, within DDA3937_RS06705 at 1496.497 kb on - strand, within DDA3937_RS06705 at 1496.510 kb on + strand at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.512 kb on + strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.513 kb on - strand, within DDA3937_RS06705 at 1496.520 kb on + strand, within DDA3937_RS06705 at 1496.520 kb on + strand, within DDA3937_RS06705 at 1496.520 kb on + strand, within DDA3937_RS06705 at 1496.521 kb on - strand, within DDA3937_RS06705 at 1496.539 kb on + strand, within DDA3937_RS06705 at 1496.540 kb on - strand, within DDA3937_RS06705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,493,555 + DDA3937_RS06690 0.78 +0.1 1,493,555 + DDA3937_RS06690 0.78 +0.9 1,493,555 + DDA3937_RS06690 0.78 -1.1 1,493,555 + DDA3937_RS06690 0.78 -2.6 1,493,555 + DDA3937_RS06690 0.78 -0.4 1,493,555 + DDA3937_RS06690 0.78 +1.2 1,493,555 + DDA3937_RS06690 0.78 -1.1 1,493,556 - DDA3937_RS06690 0.78 -1.1 1,493,556 - DDA3937_RS06690 0.78 +1.4 1,493,556 - DDA3937_RS06690 0.78 -1.4 1,493,556 - DDA3937_RS06690 0.78 -1.4 1,493,556 - DDA3937_RS06690 0.78 -1.3 1,493,609 + DDA3937_RS06690 0.86 -0.5 1,493,609 + DDA3937_RS06690 0.86 -0.3 1,493,610 - DDA3937_RS06690 0.87 -0.9 1,493,660 - -0.9 1,493,694 - -0.1 1,493,700 + -0.9 1,493,721 + +0.9 1,493,721 + +0.9 1,493,722 - +0.0 1,493,722 - +0.0 1,493,722 - -0.5 1,493,740 - -1.3 1,493,740 - +1.9 1,493,740 - -0.4 1,494,099 + DDA3937_RS06695 0.52 -1.9 1,494,215 - DDA3937_RS06695 0.72 -0.1 1,494,253 - DDA3937_RS06695 0.78 +0.6 1,494,253 - DDA3937_RS06695 0.78 -0.5 1,494,307 + DDA3937_RS06695 0.88 -0.3 1,494,308 - DDA3937_RS06695 0.88 -0.1 1,494,308 - DDA3937_RS06695 0.88 -1.0 1,494,308 - DDA3937_RS06695 0.88 -1.4 1,494,308 - DDA3937_RS06695 0.88 -1.4 1,494,308 - DDA3937_RS06695 0.88 -0.3 1,494,309 + DDA3937_RS06695 0.88 -0.2 1,494,331 + -1.1 1,494,331 + -1.3 1,494,332 - -0.1 1,494,376 + -0.4 1,494,449 - +2.5 1,494,510 + -1.9 1,494,510 + -2.3 1,494,510 + -0.9 1,494,510 + -0.3 1,494,511 - -2.6 1,494,511 - -1.9 1,494,511 - -0.4 1,494,512 + -1.3 1,494,512 + +0.6 1,494,512 + -0.7 1,494,512 + -0.6 1,494,513 - -0.9 1,494,513 - -1.9 1,494,513 - -1.7 1,495,038 + DDA3937_RS06700 0.35 -1.2 1,495,038 + DDA3937_RS06700 0.35 -2.2 1,495,039 - DDA3937_RS06700 0.35 -1.2 1,495,077 + DDA3937_RS06700 0.37 -0.8 1,495,143 + DDA3937_RS06700 0.40 -0.5 1,495,196 + DDA3937_RS06700 0.43 -2.9 1,495,248 + DDA3937_RS06700 0.46 -0.7 1,495,248 + DDA3937_RS06700 0.46 -0.9 1,495,248 + DDA3937_RS06700 0.46 -1.1 1,495,249 - DDA3937_RS06700 0.46 -0.9 1,495,249 - DDA3937_RS06700 0.46 +1.2 1,495,249 - DDA3937_RS06700 0.46 +1.1 1,495,249 - DDA3937_RS06700 0.46 -1.3 1,495,249 - DDA3937_RS06700 0.46 +0.9 1,495,249 - DDA3937_RS06700 0.46 -0.6 1,495,386 + DDA3937_RS06700 0.54 +0.2 1,495,386 + DDA3937_RS06700 0.54 -2.1 1,495,387 - DDA3937_RS06700 0.54 -0.7 1,495,434 + DDA3937_RS06700 0.56 +0.1 1,495,434 + DDA3937_RS06700 0.56 -1.1 1,495,434 - DDA3937_RS06700 0.56 -1.4 1,495,434 - DDA3937_RS06700 0.56 -0.6 1,495,451 + DDA3937_RS06700 0.57 +0.3 1,495,854 + DDA3937_RS06700 0.80 -0.9 1,495,855 - DDA3937_RS06700 0.80 -0.3 1,495,997 + DDA3937_RS06700 0.87 -0.6 1,495,998 - DDA3937_RS06700 0.87 -1.2 1,495,998 - DDA3937_RS06700 0.87 -1.1 1,496,067 - +0.1 1,496,355 + +0.6 1,496,355 + -0.9 1,496,355 + +0.1 1,496,356 - -1.9 1,496,356 - -0.7 1,496,356 - -0.3 1,496,402 + +0.4 1,496,403 - -0.0 1,496,449 + +1.8 1,496,450 - +0.6 1,496,450 - -0.3 1,496,479 + DDA3937_RS06705 0.11 -0.7 1,496,480 - DDA3937_RS06705 0.11 +0.1 1,496,480 - DDA3937_RS06705 0.11 +0.1 1,496,480 - DDA3937_RS06705 0.11 +0.2 1,496,497 - DDA3937_RS06705 0.12 +0.9 1,496,497 - DDA3937_RS06705 0.12 -0.1 1,496,510 + -1.1 1,496,512 + DDA3937_RS06705 0.13 -0.1 1,496,512 + DDA3937_RS06705 0.13 -0.2 1,496,512 + DDA3937_RS06705 0.13 -0.1 1,496,512 + DDA3937_RS06705 0.13 -0.6 1,496,512 + DDA3937_RS06705 0.13 +0.9 1,496,512 + DDA3937_RS06705 0.13 -1.7 1,496,512 + DDA3937_RS06705 0.13 -0.7 1,496,512 + DDA3937_RS06705 0.13 -0.2 1,496,512 + DDA3937_RS06705 0.13 -0.1 1,496,512 + DDA3937_RS06705 0.13 -1.3 1,496,512 + DDA3937_RS06705 0.13 +0.1 1,496,513 - DDA3937_RS06705 0.13 -0.6 1,496,513 - DDA3937_RS06705 0.13 +0.3 1,496,513 - DDA3937_RS06705 0.13 +0.0 1,496,513 - DDA3937_RS06705 0.13 -0.6 1,496,513 - DDA3937_RS06705 0.13 +0.1 1,496,513 - DDA3937_RS06705 0.13 -0.2 1,496,513 - DDA3937_RS06705 0.13 +0.6 1,496,513 - -0.7 1,496,513 - DDA3937_RS06705 0.13 +0.3 1,496,513 - DDA3937_RS06705 0.13 -0.0 1,496,513 - DDA3937_RS06705 0.13 +0.4 1,496,513 - DDA3937_RS06705 0.13 +0.1 1,496,513 - DDA3937_RS06705 0.13 -0.1 1,496,513 - DDA3937_RS06705 0.13 +0.3 1,496,513 - DDA3937_RS06705 0.13 +0.5 1,496,513 - DDA3937_RS06705 0.13 +0.3 1,496,520 + DDA3937_RS06705 0.13 -1.3 1,496,520 + DDA3937_RS06705 0.13 +0.1 1,496,520 + DDA3937_RS06705 0.13 -0.4 1,496,521 - DDA3937_RS06705 0.13 +2.9 1,496,539 + DDA3937_RS06705 0.14 -0.6 1,496,540 - DDA3937_RS06705 0.14 -2.3
Or see this region's nucleotide sequence