Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06580

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06575 and DDA3937_RS06580 overlap by 4 nucleotidesDDA3937_RS06580 and DDA3937_RS06585 overlap by 4 nucleotides DDA3937_RS06575: DDA3937_RS06575 - efflux RND transporter permease subunit, at 1,466,922 to 1,470,059 _RS06575 DDA3937_RS06580: DDA3937_RS06580 - efflux RND transporter periplasmic adaptor subunit, at 1,470,056 to 1,471,570 _RS06580 DDA3937_RS06585: DDA3937_RS06585 - TolC family protein, at 1,471,567 to 1,472,826 _RS06585 Position (kb) 1470 1471 1472Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1469.060 kb on + strand, within DDA3937_RS06575at 1469.089 kb on + strand, within DDA3937_RS06575at 1469.089 kb on + strand, within DDA3937_RS06575at 1469.089 kb on + strand, within DDA3937_RS06575at 1469.090 kb on - strand, within DDA3937_RS06575at 1469.229 kb on - strand, within DDA3937_RS06575at 1469.269 kb on - strand, within DDA3937_RS06575at 1469.323 kb on - strand, within DDA3937_RS06575at 1469.374 kb on + strand, within DDA3937_RS06575at 1469.374 kb on + strand, within DDA3937_RS06575at 1469.374 kb on + strand, within DDA3937_RS06575at 1469.374 kb on + strand, within DDA3937_RS06575at 1469.375 kb on - strand, within DDA3937_RS06575at 1469.375 kb on - strand, within DDA3937_RS06575at 1469.375 kb on - strand, within DDA3937_RS06575at 1469.375 kb on - strand, within DDA3937_RS06575at 1469.375 kb on - strand, within DDA3937_RS06575at 1469.375 kb on - strand, within DDA3937_RS06575at 1469.501 kb on - strand, within DDA3937_RS06575at 1469.563 kb on + strand, within DDA3937_RS06575at 1469.563 kb on + strand, within DDA3937_RS06575at 1469.563 kb on + strand, within DDA3937_RS06575at 1469.563 kb on + strand, within DDA3937_RS06575at 1469.564 kb on - strand, within DDA3937_RS06575at 1469.564 kb on - strand, within DDA3937_RS06575at 1469.635 kb on + strand, within DDA3937_RS06575at 1469.635 kb on + strand, within DDA3937_RS06575at 1469.636 kb on - strand, within DDA3937_RS06575at 1469.641 kb on + strand, within DDA3937_RS06575at 1469.641 kb on + strand, within DDA3937_RS06575at 1469.641 kb on + strand, within DDA3937_RS06575at 1469.641 kb on + strand, within DDA3937_RS06575at 1469.641 kb on + strand, within DDA3937_RS06575at 1469.641 kb on + strandat 1469.641 kb on + strand, within DDA3937_RS06575at 1469.641 kb on + strand, within DDA3937_RS06575at 1469.642 kb on - strand, within DDA3937_RS06575at 1469.642 kb on - strand, within DDA3937_RS06575at 1469.642 kb on - strand, within DDA3937_RS06575at 1469.642 kb on - strand, within DDA3937_RS06575at 1469.642 kb on - strand, within DDA3937_RS06575at 1469.642 kb on - strand, within DDA3937_RS06575at 1469.693 kb on + strand, within DDA3937_RS06575at 1469.710 kb on - strandat 1469.710 kb on - strand, within DDA3937_RS06575at 1469.722 kb on + strand, within DDA3937_RS06575at 1469.723 kb on - strand, within DDA3937_RS06575at 1469.779 kb on + strandat 1469.780 kb on - strandat 1469.786 kb on - strandat 1469.786 kb on - strandat 1469.786 kb on - strandat 1469.786 kb on - strandat 1469.902 kb on + strandat 1470.059 kb on + strandat 1470.059 kb on + strandat 1470.059 kb on + strandat 1470.059 kb on + strandat 1470.059 kb on + strandat 1470.060 kb on - strandat 1470.060 kb on - strandat 1470.060 kb on - strandat 1470.060 kb on - strandat 1470.119 kb on - strandat 1470.498 kb on + strand, within DDA3937_RS06580at 1470.499 kb on - strand, within DDA3937_RS06580at 1470.499 kb on - strand, within DDA3937_RS06580at 1470.518 kb on + strand, within DDA3937_RS06580at 1470.519 kb on - strand, within DDA3937_RS06580at 1470.519 kb on - strand, within DDA3937_RS06580at 1470.519 kb on - strand, within DDA3937_RS06580at 1470.522 kb on - strand, within DDA3937_RS06580at 1470.612 kb on + strand, within DDA3937_RS06580at 1470.612 kb on + strand, within DDA3937_RS06580at 1470.612 kb on + strand, within DDA3937_RS06580at 1470.612 kb on + strand, within DDA3937_RS06580at 1470.613 kb on - strand, within DDA3937_RS06580at 1470.613 kb on - strand, within DDA3937_RS06580at 1470.613 kb on - strand, within DDA3937_RS06580at 1470.613 kb on - strand, within DDA3937_RS06580at 1470.616 kb on + strand, within DDA3937_RS06580at 1470.617 kb on - strand, within DDA3937_RS06580at 1470.650 kb on + strand, within DDA3937_RS06580at 1470.739 kb on + strand, within DDA3937_RS06580at 1470.740 kb on - strand, within DDA3937_RS06580at 1470.740 kb on - strand, within DDA3937_RS06580at 1470.740 kb on - strand, within DDA3937_RS06580at 1470.773 kb on + strand, within DDA3937_RS06580at 1470.773 kb on + strand, within DDA3937_RS06580at 1470.773 kb on + strand, within DDA3937_RS06580at 1470.773 kb on + strandat 1470.773 kb on + strand, within DDA3937_RS06580at 1470.774 kb on - strand, within DDA3937_RS06580at 1470.774 kb on - strand, within DDA3937_RS06580at 1470.774 kb on - strand, within DDA3937_RS06580at 1470.798 kb on + strandat 1470.897 kb on + strand, within DDA3937_RS06580at 1470.898 kb on - strand, within DDA3937_RS06580at 1470.898 kb on - strand, within DDA3937_RS06580at 1471.032 kb on - strandat 1471.050 kb on + strand, within DDA3937_RS06580at 1471.051 kb on - strand, within DDA3937_RS06580at 1471.051 kb on - strand, within DDA3937_RS06580at 1471.138 kb on + strand, within DDA3937_RS06580at 1471.138 kb on + strand, within DDA3937_RS06580at 1471.138 kb on + strand, within DDA3937_RS06580at 1471.139 kb on - strand, within DDA3937_RS06580at 1471.139 kb on - strand, within DDA3937_RS06580at 1471.329 kb on + strand, within DDA3937_RS06580at 1471.354 kb on + strand, within DDA3937_RS06580at 1471.354 kb on + strand, within DDA3937_RS06580at 1471.355 kb on - strand, within DDA3937_RS06580at 1471.366 kb on + strand, within DDA3937_RS06580at 1471.407 kb on + strand, within DDA3937_RS06580at 1471.407 kb on + strand, within DDA3937_RS06580at 1471.407 kb on + strand, within DDA3937_RS06580at 1471.408 kb on - strand, within DDA3937_RS06580at 1471.408 kb on - strand, within DDA3937_RS06580at 1471.408 kb on - strand, within DDA3937_RS06580at 1471.408 kb on - strand, within DDA3937_RS06580at 1471.408 kb on - strand, within DDA3937_RS06580at 1471.413 kb on + strand, within DDA3937_RS06580at 1471.414 kb on - strand, within DDA3937_RS06580at 1471.414 kb on - strand, within DDA3937_RS06580at 1471.494 kb on + strandat 1471.495 kb on - strandat 1471.495 kb on - strandat 1471.495 kb on - strandat 1471.495 kb on - strandat 1471.498 kb on - strandat 1471.498 kb on - strandat 1471.555 kb on + strandat 1471.627 kb on - strandat 1471.718 kb on + strand, within DDA3937_RS06585at 1471.805 kb on + strand, within DDA3937_RS06585at 1471.805 kb on + strand, within DDA3937_RS06585at 1471.878 kb on + strand, within DDA3937_RS06585at 1471.994 kb on + strand, within DDA3937_RS06585at 1471.995 kb on - strand, within DDA3937_RS06585at 1471.995 kb on - strand, within DDA3937_RS06585at 1471.997 kb on + strand, within DDA3937_RS06585at 1471.997 kb on + strandat 1471.997 kb on + strand, within DDA3937_RS06585at 1471.997 kb on + strand, within DDA3937_RS06585at 1471.998 kb on - strand, within DDA3937_RS06585at 1471.998 kb on - strand, within DDA3937_RS06585at 1471.998 kb on - strand, within DDA3937_RS06585at 1472.114 kb on + strand, within DDA3937_RS06585at 1472.115 kb on - strand, within DDA3937_RS06585at 1472.332 kb on - strand, within DDA3937_RS06585at 1472.377 kb on + strand, within DDA3937_RS06585at 1472.377 kb on + strand, within DDA3937_RS06585at 1472.377 kb on + strand, within DDA3937_RS06585at 1472.522 kb on + strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585at 1472.523 kb on - strand, within DDA3937_RS06585

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,469,060 + DDA3937_RS06575 0.68 +0.3
1,469,089 + DDA3937_RS06575 0.69 -0.6
1,469,089 + DDA3937_RS06575 0.69 +0.1
1,469,089 + DDA3937_RS06575 0.69 +0.1
1,469,090 - DDA3937_RS06575 0.69 +0.1
1,469,229 - DDA3937_RS06575 0.74 +0.1
1,469,269 - DDA3937_RS06575 0.75 -1.1
1,469,323 - DDA3937_RS06575 0.77 -0.1
1,469,374 + DDA3937_RS06575 0.78 +1.2
1,469,374 + DDA3937_RS06575 0.78 +0.5
1,469,374 + DDA3937_RS06575 0.78 -0.8
1,469,374 + DDA3937_RS06575 0.78 -0.9
1,469,375 - DDA3937_RS06575 0.78 -1.0
1,469,375 - DDA3937_RS06575 0.78 +0.4
1,469,375 - DDA3937_RS06575 0.78 -0.5
1,469,375 - DDA3937_RS06575 0.78 -0.3
1,469,375 - DDA3937_RS06575 0.78 -0.1
1,469,375 - DDA3937_RS06575 0.78 -0.3
1,469,501 - DDA3937_RS06575 0.82 -0.1
1,469,563 + DDA3937_RS06575 0.84 +0.3
1,469,563 + DDA3937_RS06575 0.84 +0.5
1,469,563 + DDA3937_RS06575 0.84 -0.0
1,469,563 + DDA3937_RS06575 0.84 +0.3
1,469,564 - DDA3937_RS06575 0.84 -0.0
1,469,564 - DDA3937_RS06575 0.84 +0.0
1,469,635 + DDA3937_RS06575 0.86 -0.0
1,469,635 + DDA3937_RS06575 0.86 +0.5
1,469,636 - DDA3937_RS06575 0.86 -0.7
1,469,641 + DDA3937_RS06575 0.87 -0.3
1,469,641 + DDA3937_RS06575 0.87 +0.6
1,469,641 + DDA3937_RS06575 0.87 -0.2
1,469,641 + DDA3937_RS06575 0.87 +0.2
1,469,641 + DDA3937_RS06575 0.87 +0.0
1,469,641 + +1.5
1,469,641 + DDA3937_RS06575 0.87 +0.9
1,469,641 + DDA3937_RS06575 0.87 -0.2
1,469,642 - DDA3937_RS06575 0.87 -0.9
1,469,642 - DDA3937_RS06575 0.87 -0.2
1,469,642 - DDA3937_RS06575 0.87 -0.0
1,469,642 - DDA3937_RS06575 0.87 -0.0
1,469,642 - DDA3937_RS06575 0.87 +0.0
1,469,642 - DDA3937_RS06575 0.87 -0.1
1,469,693 + DDA3937_RS06575 0.88 -0.1
1,469,710 - -0.7
1,469,710 - DDA3937_RS06575 0.89 +0.5
1,469,722 + DDA3937_RS06575 0.89 -0.6
1,469,723 - DDA3937_RS06575 0.89 -0.3
1,469,779 + +0.9
1,469,780 - +0.9
1,469,786 - -0.2
1,469,786 - +0.4
1,469,786 - +0.2
1,469,786 - -0.2
1,469,902 + +0.3
1,470,059 + -0.1
1,470,059 + -0.4
1,470,059 + +1.9
1,470,059 + -1.4
1,470,059 + -0.3
1,470,060 - -0.2
1,470,060 - +0.9
1,470,060 - -1.1
1,470,060 - -0.7
1,470,119 - -0.5
1,470,498 + DDA3937_RS06580 0.29 -1.0
1,470,499 - DDA3937_RS06580 0.29 +0.2
1,470,499 - DDA3937_RS06580 0.29 +0.3
1,470,518 + DDA3937_RS06580 0.30 -0.5
1,470,519 - DDA3937_RS06580 0.31 -0.2
1,470,519 - DDA3937_RS06580 0.31 -0.1
1,470,519 - DDA3937_RS06580 0.31 -0.9
1,470,522 - DDA3937_RS06580 0.31 +0.3
1,470,612 + DDA3937_RS06580 0.37 -0.7
1,470,612 + DDA3937_RS06580 0.37 +0.2
1,470,612 + DDA3937_RS06580 0.37 -0.0
1,470,612 + DDA3937_RS06580 0.37 +0.8
1,470,613 - DDA3937_RS06580 0.37 -0.2
1,470,613 - DDA3937_RS06580 0.37 +0.3
1,470,613 - DDA3937_RS06580 0.37 -0.1
1,470,613 - DDA3937_RS06580 0.37 +1.4
1,470,616 + DDA3937_RS06580 0.37 +0.6
1,470,617 - DDA3937_RS06580 0.37 -0.8
1,470,650 + DDA3937_RS06580 0.39 +2.1
1,470,739 + DDA3937_RS06580 0.45 +0.1
1,470,740 - DDA3937_RS06580 0.45 -0.1
1,470,740 - DDA3937_RS06580 0.45 -0.5
1,470,740 - DDA3937_RS06580 0.45 -0.2
1,470,773 + DDA3937_RS06580 0.47 +0.2
1,470,773 + DDA3937_RS06580 0.47 -0.5
1,470,773 + DDA3937_RS06580 0.47 +0.6
1,470,773 + +1.5
1,470,773 + DDA3937_RS06580 0.47 +1.7
1,470,774 - DDA3937_RS06580 0.47 +1.2
1,470,774 - DDA3937_RS06580 0.47 +0.2
1,470,774 - DDA3937_RS06580 0.47 -1.4
1,470,798 + +1.9
1,470,897 + DDA3937_RS06580 0.56 -0.0
1,470,898 - DDA3937_RS06580 0.56 -0.1
1,470,898 - DDA3937_RS06580 0.56 -0.6
1,471,032 - +0.9
1,471,050 + DDA3937_RS06580 0.66 +0.1
1,471,051 - DDA3937_RS06580 0.66 -1.1
1,471,051 - DDA3937_RS06580 0.66 -0.1
1,471,138 + DDA3937_RS06580 0.71 +0.0
1,471,138 + DDA3937_RS06580 0.71 -0.9
1,471,138 + DDA3937_RS06580 0.71 -0.9
1,471,139 - DDA3937_RS06580 0.71 -0.1
1,471,139 - DDA3937_RS06580 0.71 +0.6
1,471,329 + DDA3937_RS06580 0.84 +0.1
1,471,354 + DDA3937_RS06580 0.86 -0.2
1,471,354 + DDA3937_RS06580 0.86 +0.6
1,471,355 - DDA3937_RS06580 0.86 -0.3
1,471,366 + DDA3937_RS06580 0.86 +0.3
1,471,407 + DDA3937_RS06580 0.89 +0.2
1,471,407 + DDA3937_RS06580 0.89 +0.6
1,471,407 + DDA3937_RS06580 0.89 +2.5
1,471,408 - DDA3937_RS06580 0.89 -0.9
1,471,408 - DDA3937_RS06580 0.89 +0.5
1,471,408 - DDA3937_RS06580 0.89 -0.1
1,471,408 - DDA3937_RS06580 0.89 -0.1
1,471,408 - DDA3937_RS06580 0.89 +0.6
1,471,413 + DDA3937_RS06580 0.90 -0.1
1,471,414 - DDA3937_RS06580 0.90 -0.2
1,471,414 - DDA3937_RS06580 0.90 +2.2
1,471,494 + -0.0
1,471,495 - -0.3
1,471,495 - -3.0
1,471,495 - +0.2
1,471,495 - -0.7
1,471,498 - +0.4
1,471,498 - +1.7
1,471,555 + -0.1
1,471,627 - +0.6
1,471,718 + DDA3937_RS06585 0.12 -0.1
1,471,805 + DDA3937_RS06585 0.19 -1.3
1,471,805 + DDA3937_RS06585 0.19 -0.2
1,471,878 + DDA3937_RS06585 0.25 +0.0
1,471,994 + DDA3937_RS06585 0.34 -0.9
1,471,995 - DDA3937_RS06585 0.34 -0.4
1,471,995 - DDA3937_RS06585 0.34 -0.4
1,471,997 + DDA3937_RS06585 0.34 -0.1
1,471,997 + +2.2
1,471,997 + DDA3937_RS06585 0.34 +0.2
1,471,997 + DDA3937_RS06585 0.34 -1.5
1,471,998 - DDA3937_RS06585 0.34 +0.5
1,471,998 - DDA3937_RS06585 0.34 +2.5
1,471,998 - DDA3937_RS06585 0.34 +0.9
1,472,114 + DDA3937_RS06585 0.43 +0.4
1,472,115 - DDA3937_RS06585 0.43 +0.2
1,472,332 - DDA3937_RS06585 0.61 +2.9
1,472,377 + DDA3937_RS06585 0.64 -0.0
1,472,377 + DDA3937_RS06585 0.64 -1.4
1,472,377 + DDA3937_RS06585 0.64 +1.6
1,472,522 + DDA3937_RS06585 0.76 +1.0
1,472,523 - DDA3937_RS06585 0.76 +0.2
1,472,523 - DDA3937_RS06585 0.76 +0.6
1,472,523 - DDA3937_RS06585 0.76 -0.9
1,472,523 - DDA3937_RS06585 0.76 -0.3
1,472,523 - DDA3937_RS06585 0.76 +2.6
1,472,523 - DDA3937_RS06585 0.76 -1.4
1,472,523 - DDA3937_RS06585 0.76 -1.1
1,472,523 - DDA3937_RS06585 0.76 -0.2

Or see this region's nucleotide sequence