Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06405

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,430,379	-		DDA3937_RS06400	0.12	+0.4
1,430,379	-		DDA3937_RS06400	0.12	-0.4
1,430,452	+		DDA3937_RS06400	0.19	+0.9
1,430,452	+		DDA3937_RS06400	0.19	-0.3
1,430,453	-		DDA3937_RS06400	0.19	-0.7
1,430,570	+		DDA3937_RS06400	0.32	-0.3
1,430,571	-		DDA3937_RS06400	0.32	-0.8
1,430,572	+		DDA3937_RS06400	0.32	+1.9
1,430,572	+		DDA3937_RS06400	0.32	+0.3
1,430,573	-		DDA3937_RS06400	0.32	-1.6
1,430,573	-		DDA3937_RS06400	0.32	+0.5
1,430,647	+		DDA3937_RS06400	0.40	+1.2
1,430,758	+		DDA3937_RS06400	0.51	+0.3
1,430,765	+		DDA3937_RS06400	0.52	-0.3
1,430,765	+		DDA3937_RS06400	0.52	-0.8
1,430,765	+		DDA3937_RS06400	0.52	-0.8
1,430,766	-		DDA3937_RS06400	0.52	-0.8
1,430,766	-		DDA3937_RS06400	0.52	-0.7
1,430,766	-		DDA3937_RS06400	0.52	+0.9
1,430,842	+		DDA3937_RS06400	0.60	+0.3
1,430,842	+		DDA3937_RS06400	0.60	+0.1
1,430,842	+		DDA3937_RS06400	0.60	+0.5
1,430,842	+		DDA3937_RS06400	0.60	+0.8
1,431,137	+				+0.2
1,431,137	+				+0.4
1,431,137	+				+1.7
1,431,138	-				-0.7
1,431,138	-				+0.2
1,431,179	+				+0.1
1,431,179	+				+0.4
1,431,180	-				-0.2
1,431,224	+				+0.5
1,431,238	+				+0.9
1,431,239	-				-0.1
1,431,244	+				-0.8
1,431,244	+				-1.2
1,431,244	+				-1.6
1,431,244	+				+0.2
1,431,245	-				-0.4
1,431,245	-				-0.9
1,431,291	-				-1.4
1,431,291	-				-0.9
1,431,559	+		DDA3937_RS06405	0.21	-1.4
1,431,560	-		DDA3937_RS06405	0.21	-0.8
1,431,560	-		DDA3937_RS06405	0.21	-0.1
1,431,572	-		DDA3937_RS06405	0.22	-0.4
1,431,572	-				-1.1
1,431,700	+		DDA3937_RS06405	0.31	-0.4
1,431,700	+		DDA3937_RS06405	0.31	-0.6
1,431,700	+		DDA3937_RS06405	0.31	+0.5
1,431,700	+		DDA3937_RS06405	0.31	-0.1
1,431,700	+		DDA3937_RS06405	0.31	-0.6
1,431,700	+		DDA3937_RS06405	0.31	-0.1
1,431,700	+		DDA3937_RS06405	0.31	-0.8
1,431,700	+		DDA3937_RS06405	0.31	+0.1
1,431,700	+		DDA3937_RS06405	0.31	-0.4
1,431,700	+		DDA3937_RS06405	0.31	-0.1
1,431,700	+		DDA3937_RS06405	0.31	-0.3
1,431,700	+		DDA3937_RS06405	0.31	-0.5
1,431,700	+		DDA3937_RS06405	0.31	-1.1
1,431,700	+		DDA3937_RS06405	0.31	+0.1
1,431,700	+		DDA3937_RS06405	0.31	+0.8
1,431,701	-		DDA3937_RS06405	0.31	-0.9
1,431,701	-		DDA3937_RS06405	0.31	+0.2
1,431,701	-		DDA3937_RS06405	0.31	+0.5
1,431,701	-		DDA3937_RS06405	0.31	-0.0
1,431,701	-		DDA3937_RS06405	0.31	-0.8
1,431,701	-		DDA3937_RS06405	0.31	-0.7
1,431,701	-		DDA3937_RS06405	0.31	-0.6
1,431,701	-		DDA3937_RS06405	0.31	-0.8
1,431,701	-		DDA3937_RS06405	0.31	+0.5
1,431,701	-		DDA3937_RS06405	0.31	-0.5
1,431,701	-		DDA3937_RS06405	0.31	-1.6
1,431,702	+		DDA3937_RS06405	0.31	+1.0
1,431,703	-		DDA3937_RS06405	0.31	-0.7
1,431,703	-		DDA3937_RS06405	0.31	+1.3
1,431,703	-		DDA3937_RS06405	0.31	+0.2
1,431,798	+		DDA3937_RS06405	0.38	+1.0
1,431,799	-		DDA3937_RS06405	0.38	+0.2
1,431,922	+		DDA3937_RS06405	0.47	-0.2
1,431,922	+		DDA3937_RS06405	0.47	+1.9
1,431,922	+		DDA3937_RS06405	0.47	-0.5
1,431,922	+		DDA3937_RS06405	0.47	-0.5
1,431,922	+		DDA3937_RS06405	0.47	-1.2
1,431,922	+		DDA3937_RS06405	0.47	+0.1
1,431,922	+		DDA3937_RS06405	0.47	+0.4
1,431,923	-		DDA3937_RS06405	0.47	+0.4
1,431,923	-		DDA3937_RS06405	0.47	+0.6
1,432,023	-		DDA3937_RS06405	0.54	+0.9
1,432,072	-		DDA3937_RS06405	0.57	+0.4
1,432,080	+		DDA3937_RS06405	0.58	+0.4
1,432,080	+		DDA3937_RS06405	0.58	-0.7
1,432,081	-		DDA3937_RS06405	0.58	+2.2
1,432,081	-		DDA3937_RS06405	0.58	+0.2
1,432,105	+		DDA3937_RS06405	0.59	+0.2
1,432,136	+		DDA3937_RS06405	0.61	-0.1
1,432,237	-		DDA3937_RS06405	0.69	+2.3
1,432,237	-		DDA3937_RS06405	0.69	+0.3
1,432,357	+		DDA3937_RS06405	0.77	-0.1
1,432,358	-		DDA3937_RS06405	0.77	-3.5
1,432,447	+		DDA3937_RS06405	0.83	+0.2
1,432,451	+		DDA3937_RS06405	0.84	-0.0
1,432,577	+				+1.5
1,432,578	-				+0.5
1,432,601	-				-0.3
1,432,717	+				+0.1
1,432,718	-				-0.9
1,432,718	-				-0.9
1,432,718	-				-1.1
1,432,718	-				-0.6
1,432,723	+				+0.9
1,432,723	+				+1.2
1,432,723	+				-0.8
1,432,724	-				-0.1
1,432,724	-				+0.2
1,432,724	-				+1.1
1,432,726	+				-1.4
1,432,727	-				-1.1
1,432,727	-				+0.6
1,432,948	+		DDA3937_RS06410	0.31	-0.6
1,432,997	+		DDA3937_RS06410	0.38	-0.1
1,433,105	+		DDA3937_RS06410	0.52	+0.3
1,433,106	-		DDA3937_RS06410	0.52	-0.4
1,433,219	-		DDA3937_RS06410	0.67	+0.4
1,433,219	-		DDA3937_RS06410	0.67	-1.0
1,433,231	-		DDA3937_RS06410	0.69	-0.2
1,433,231	-		DDA3937_RS06410	0.69	+0.3
1,433,252	-		DDA3937_RS06410	0.72	-0.1
1,433,349	-		DDA3937_RS06410	0.85	-1.0
1,433,443	+				-0.6
1,433,444	-				-0.8
1,433,444	-				-0.3
1,433,444	-				+1.1
1,433,450	-				+0.5
1,433,459	+				+0.2
1,433,460	-				-1.5
1,433,460	-				-0.2
1,433,550	-				-0.8