Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04755

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,057,995	+		DDA3937_RS04750	0.41	+0.8
1,057,995	+		DDA3937_RS04750	0.41	-0.7
1,057,995	+		DDA3937_RS04750	0.41	-0.3
1,057,997	+		DDA3937_RS04750	0.41	+1.6
1,057,998	-		DDA3937_RS04750	0.41	+0.2
1,057,998	-		DDA3937_RS04750	0.41	-1.3
1,057,998	-		DDA3937_RS04750	0.41	+0.0
1,058,054	+		DDA3937_RS04750	0.45	+1.3
1,058,054	+		DDA3937_RS04750	0.45	-0.6
1,058,055	-		DDA3937_RS04750	0.45	-0.8
1,058,055	-		DDA3937_RS04750	0.45	+0.6
1,058,144	-		DDA3937_RS04750	0.51	-0.6
1,058,232	+		DDA3937_RS04750	0.57	+0.7
1,058,232	+		DDA3937_RS04750	0.57	+0.3
1,058,233	-		DDA3937_RS04750	0.57	-0.9
1,058,236	-				+1.0
1,058,236	-		DDA3937_RS04750	0.57	+0.8
1,058,236	-		DDA3937_RS04750	0.57	-0.3
1,058,236	-		DDA3937_RS04750	0.57	-1.7
1,058,249	+		DDA3937_RS04750	0.58	-0.2
1,058,249	+		DDA3937_RS04750	0.58	-0.0
1,058,361	-		DDA3937_RS04750	0.65	-0.8
1,058,361	-		DDA3937_RS04750	0.65	+0.0
1,058,371	+		DDA3937_RS04750	0.66	-0.4
1,058,372	-		DDA3937_RS04750	0.66	-0.4
1,058,372	-		DDA3937_RS04750	0.66	-2.6
1,058,372	-		DDA3937_RS04750	0.66	-0.1
1,058,375	+		DDA3937_RS04750	0.66	+1.0
1,058,376	-		DDA3937_RS04750	0.66	+0.7
1,058,382	-		DDA3937_RS04750	0.66	-0.8
1,058,382	-		DDA3937_RS04750	0.66	-0.3
1,058,384	-		DDA3937_RS04750	0.67	-0.4
1,058,458	+		DDA3937_RS04750	0.71	+0.1
1,058,458	+		DDA3937_RS04750	0.71	+0.6
1,058,458	+		DDA3937_RS04750	0.71	+0.5
1,058,459	-		DDA3937_RS04750	0.72	+1.4
1,058,512	-		DDA3937_RS04750	0.75	+0.7
1,058,512	-		DDA3937_RS04750	0.75	+2.0
1,058,512	-		DDA3937_RS04750	0.75	-0.9
1,058,534	+		DDA3937_RS04750	0.76	-0.4
1,058,534	+		DDA3937_RS04750	0.76	-0.7
1,058,535	-		DDA3937_RS04750	0.76	-1.2
1,058,554	+		DDA3937_RS04750	0.78	+1.0
1,058,574	+		DDA3937_RS04750	0.79	+0.8
1,058,574	+		DDA3937_RS04750	0.79	-0.5
1,058,575	-		DDA3937_RS04750	0.79	-1.4
1,058,610	+		DDA3937_RS04750	0.81	-1.0
1,058,611	+		DDA3937_RS04750	0.81	-0.7
1,058,611	+		DDA3937_RS04750	0.81	-1.0
1,058,611	+		DDA3937_RS04750	0.81	+0.5
1,058,611	+		DDA3937_RS04750	0.81	+0.4
1,058,611	+		DDA3937_RS04750	0.81	-1.0
1,058,611	+		DDA3937_RS04750	0.81	-0.2
1,058,612	-				-0.6
1,058,612	-		DDA3937_RS04750	0.82	-1.4
1,058,612	-		DDA3937_RS04750	0.82	-0.2
1,058,612	-		DDA3937_RS04750	0.82	+0.5
1,058,613	+		DDA3937_RS04750	0.82	+0.0
1,058,613	+		DDA3937_RS04750	0.82	-1.5
1,058,614	-		DDA3937_RS04750	0.82	-0.9
1,058,721	-		DDA3937_RS04750	0.89	+0.1
1,058,721	-		DDA3937_RS04750	0.89	-1.4
1,058,754	-				+0.4
1,058,754	-				-0.3
1,058,791	+				-0.5
1,058,837	+				-0.9
1,058,855	-				-1.6
1,058,855	-				+0.3
1,058,855	-				-0.2
1,058,872	-				-0.6
1,058,907	+				-0.2
1,058,907	+				+0.8
1,058,907	+				-0.7
1,058,907	+				-0.6
1,058,907	+				+0.0
1,058,908	-				+0.2
1,058,908	-				+0.7
1,058,908	-				+1.0
1,058,913	+				-0.5
1,058,970	+				+0.7
1,058,985	+		DDA3937_RS04755	0.10	-0.1
1,058,985	+		DDA3937_RS04755	0.10	+0.2
1,058,986	-		DDA3937_RS04755	0.10	+1.3
1,059,000	+		DDA3937_RS04755	0.12	-0.7
1,059,001	-		DDA3937_RS04755	0.12	+0.2
1,059,063	-		DDA3937_RS04755	0.18	+0.2
1,059,118	-		DDA3937_RS04755	0.24	+2.0
1,059,132	-		DDA3937_RS04755	0.26	+0.1
1,059,174	-		DDA3937_RS04755	0.30	+1.5
1,059,174	-		DDA3937_RS04755	0.30	+0.8
1,059,174	-		DDA3937_RS04755	0.30	-0.4
1,059,231	+		DDA3937_RS04755	0.36	+1.9
1,059,231	+		DDA3937_RS04755	0.36	+1.4
1,059,232	-		DDA3937_RS04755	0.36	+0.4
1,059,232	-		DDA3937_RS04755	0.36	+0.3
1,059,310	-		DDA3937_RS04755	0.44	-0.6
1,059,321	+		DDA3937_RS04755	0.45	-2.1
1,059,418	+		DDA3937_RS04755	0.56	-0.7
1,059,507	+		DDA3937_RS04755	0.65	-0.3
1,059,507	+		DDA3937_RS04755	0.65	-0.4
1,059,507	+		DDA3937_RS04755	0.65	-0.1
1,059,508	-		DDA3937_RS04755	0.65	-0.2
1,059,508	-		DDA3937_RS04755	0.65	+0.0
1,059,510	+		DDA3937_RS04755	0.65	+0.5
1,059,510	+		DDA3937_RS04755	0.65	-0.5
1,059,510	+		DDA3937_RS04755	0.65	+0.3
1,059,510	+		DDA3937_RS04755	0.65	+0.6
1,059,510	+		DDA3937_RS04755	0.65	-0.6
1,059,510	+		DDA3937_RS04755	0.65	-1.7
1,059,511	-		DDA3937_RS04755	0.66	-0.3
1,059,511	-		DDA3937_RS04755	0.66	-1.0
1,059,511	-		DDA3937_RS04755	0.66	-0.3
1,059,511	-		DDA3937_RS04755	0.66	+1.6
1,059,564	+		DDA3937_RS04755	0.71	-0.9
1,059,564	+		DDA3937_RS04755	0.71	+0.7
1,059,564	+		DDA3937_RS04755	0.71	+0.7
1,059,565	-		DDA3937_RS04755	0.71	+0.8
1,059,597	+		DDA3937_RS04755	0.75	-1.1
1,059,722	+		DDA3937_RS04755	0.88	+0.5
1,059,722	+		DDA3937_RS04755	0.88	+0.9
1,059,722	+		DDA3937_RS04755	0.88	-0.4
1,059,723	-		DDA3937_RS04755	0.88	-0.4
1,059,723	-		DDA3937_RS04755	0.88	+1.1
1,059,723	-		DDA3937_RS04755	0.88	+0.1
1,059,723	-		DDA3937_RS04755	0.88	-0.4
1,059,723	-		DDA3937_RS04755	0.88	-0.8
1,059,723	-		DDA3937_RS04755	0.88	+1.0
1,059,735	+		DDA3937_RS04755	0.89	+0.5
1,059,792	+				+0.8
1,059,792	+				-1.0
1,059,810	+				-2.0
1,059,811	-				+0.1
1,059,815	+				+0.7
1,059,815	+				-1.2
1,059,816	-				-0.1
1,059,816	-				+0.6
1,059,836	-				-0.2
1,059,836	-				-0.5
1,059,838	+				+1.0
1,059,839	-				+0.4
1,059,866	-				-1.2
1,060,047	+		DDA3937_RS04760	0.16	+0.2
1,060,259	+		DDA3937_RS04760	0.31	-0.2
1,060,260	-		DDA3937_RS04760	0.32	-0.2
1,060,260	-		DDA3937_RS04760	0.32	-0.0
1,060,260	-		DDA3937_RS04760	0.32	-0.3
1,060,283	-		DDA3937_RS04760	0.33	-0.3
1,060,325	+		DDA3937_RS04760	0.36	+0.6
1,060,325	+		DDA3937_RS04760	0.36	+0.5
1,060,325	+		DDA3937_RS04760	0.36	-0.8
1,060,325	+		DDA3937_RS04760	0.36	-0.8
1,060,326	-		DDA3937_RS04760	0.36	+0.4
1,060,327	+		DDA3937_RS04760	0.36	+0.5
1,060,327	+		DDA3937_RS04760	0.36	-0.8
1,060,328	-		DDA3937_RS04760	0.36	-0.3
1,060,328	-		DDA3937_RS04760	0.36	-0.1
1,060,598	+		DDA3937_RS04760	0.56	+0.4
1,060,598	+		DDA3937_RS04760	0.56	+0.9
1,060,598	+		DDA3937_RS04760	0.56	+0.2
1,060,598	+		DDA3937_RS04760	0.56	+0.1
1,060,599	-		DDA3937_RS04760	0.56	-2.6
1,060,599	-		DDA3937_RS04760	0.56	+0.3
1,060,748	+		DDA3937_RS04760	0.67	+0.0
1,060,748	+		DDA3937_RS04760	0.67	+0.0
1,060,748	+		DDA3937_RS04760	0.67	-0.3
1,060,748	+		DDA3937_RS04760	0.67	+0.8
1,060,749	-		DDA3937_RS04760	0.67	+0.3
1,060,749	-		DDA3937_RS04760	0.67	+0.0
1,060,749	-		DDA3937_RS04760	0.67	+2.2
1,060,749	-		DDA3937_RS04760	0.67	+0.2
1,060,763	+		DDA3937_RS04760	0.68	+0.5
1,060,763	+		DDA3937_RS04760	0.68	-1.1
1,060,763	+		DDA3937_RS04760	0.68	-0.5
1,060,764	-		DDA3937_RS04760	0.68	+0.6
1,060,764	-		DDA3937_RS04760	0.68	+0.9
1,060,771	+		DDA3937_RS04760	0.69	-0.0
1,060,808	+		DDA3937_RS04760	0.72	+0.1
1,060,808	+				+0.4
1,060,808	+		DDA3937_RS04760	0.72	+0.9
1,060,808	+		DDA3937_RS04760	0.72	-0.6
1,060,809	-		DDA3937_RS04760	0.72	-0.6
1,060,809	-		DDA3937_RS04760	0.72	-0.6
1,060,809	-		DDA3937_RS04760	0.72	-0.2
1,060,816	+		DDA3937_RS04760	0.72	-0.4
1,060,816	+		DDA3937_RS04760	0.72	-0.4
1,060,817	-		DDA3937_RS04760	0.72	-1.3