Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS04725

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,040,186	+		DDA3937_RS04720	0.26	+0.3
1,040,186	+		DDA3937_RS04720	0.26	-0.3
1,040,187	-		DDA3937_RS04720	0.26	-0.2
1,040,187	-		DDA3937_RS04720	0.26	-0.6
1,040,425	+		DDA3937_RS04720	0.46	-0.6
1,040,425	+		DDA3937_RS04720	0.46	-0.6
1,040,426	-		DDA3937_RS04720	0.46	-0.6
1,040,426	-				+0.4
1,040,426	-		DDA3937_RS04720	0.46	-1.1
1,040,675	+		DDA3937_RS04720	0.68	-0.1
1,040,675	+		DDA3937_RS04720	0.68	-0.8
1,040,681	+		DDA3937_RS04720	0.68	-2.1
1,040,681	+		DDA3937_RS04720	0.68	-0.3
1,040,682	-		DDA3937_RS04720	0.68	-0.2
1,040,707	-		DDA3937_RS04720	0.70	-0.6
1,040,707	-		DDA3937_RS04720	0.70	+0.7
1,040,740	+		DDA3937_RS04720	0.73	+0.9
1,040,740	+		DDA3937_RS04720	0.73	-0.1
1,040,740	+		DDA3937_RS04720	0.73	+0.6
1,040,741	-		DDA3937_RS04720	0.73	-0.1
1,040,741	-		DDA3937_RS04720	0.73	-0.2
1,040,741	-		DDA3937_RS04720	0.73	+0.7
1,040,744	+		DDA3937_RS04720	0.74	+2.7
1,040,744	+		DDA3937_RS04720	0.74	-0.6
1,040,744	+		DDA3937_RS04720	0.74	+1.3
1,040,744	+		DDA3937_RS04720	0.74	+0.0
1,040,744	+		DDA3937_RS04720	0.74	-0.8
1,040,744	+		DDA3937_RS04720	0.74	-0.6
1,040,745	-		DDA3937_RS04720	0.74	-2.2
1,040,745	-		DDA3937_RS04720	0.74	+0.0
1,040,745	-		DDA3937_RS04720	0.74	-0.1
1,040,745	-		DDA3937_RS04720	0.74	-0.1
1,040,745	-		DDA3937_RS04720	0.74	+1.0
1,040,745	-		DDA3937_RS04720	0.74	-1.0
1,040,745	-		DDA3937_RS04720	0.74	+0.0
1,040,760	-		DDA3937_RS04720	0.75	-0.6
1,040,882	+		DDA3937_RS04720	0.85	+0.5
1,041,029	+				-0.3
1,041,029	+				-0.1
1,041,030	-				-0.8
1,041,151	-				-1.0
1,041,168	-				-0.6
1,041,168	-				+1.7
1,041,224	-				-0.1
1,041,245	+				+0.3
1,041,245	+				+0.1
1,041,618	-		DDA3937_RS04725	0.38	-0.6
1,041,644	+		DDA3937_RS04725	0.40	+0.2
1,041,644	+		DDA3937_RS04725	0.40	-0.2
1,041,701	-				+3.3
1,041,750	+		DDA3937_RS04725	0.49	-0.6
1,041,750	+		DDA3937_RS04725	0.49	-0.8
1,041,751	-		DDA3937_RS04725	0.50	-1.2
1,041,751	-		DDA3937_RS04725	0.50	+0.4
1,041,752	+		DDA3937_RS04725	0.50	-1.7
1,041,752	+		DDA3937_RS04725	0.50	-0.3
1,041,839	-		DDA3937_RS04725	0.57	+0.0
1,041,897	-		DDA3937_RS04725	0.62	-0.9
1,042,057	+		DDA3937_RS04725	0.76	-0.3
1,042,057	+		DDA3937_RS04725	0.76	-1.6
1,042,069	+		DDA3937_RS04725	0.77	-1.6
1,042,070	-		DDA3937_RS04725	0.77	-1.3
1,042,070	-		DDA3937_RS04725	0.77	-0.8
1,042,070	-		DDA3937_RS04725	0.77	+0.4
1,042,082	-		DDA3937_RS04725	0.78	-0.9
1,042,184	-		DDA3937_RS04725	0.87	-1.1
1,042,212	+				-1.3
1,042,213	-		DDA3937_RS04725	0.90	+0.3
1,042,213	-		DDA3937_RS04725	0.90	-0.2
1,042,284	-				+0.5
1,042,326	+				+0.8
1,042,327	-				-1.1
1,042,327	-				+0.2
1,042,327	-				+0.1
1,042,327	-				-0.9
1,042,327	-				+0.4
1,042,436	+				+0.3
1,042,436	+				+0.8
1,042,436	+				+0.0
1,042,437	-				-0.4
1,042,437	-				+0.1
1,042,472	-				-0.1
1,042,472	-				-0.2
1,042,577	+				-1.2
1,042,578	-				-0.1
1,042,598	+				+1.0
1,042,598	+				+0.3
1,042,598	+				-0.5
1,042,599	-				+0.1
1,042,599	-				+0.7
1,042,600	+				+2.7
1,042,676	+		DDA3937_RS04730	0.11	-0.8
1,042,706	-		DDA3937_RS04730	0.12	-0.0
1,042,778	+		DDA3937_RS04730	0.15	+0.4
1,042,779	-		DDA3937_RS04730	0.15	+0.0
1,042,953	+		DDA3937_RS04730	0.20	+0.1
1,042,954	-		DDA3937_RS04730	0.20	+0.5
1,042,954	-		DDA3937_RS04730	0.20	-1.1
1,042,954	-		DDA3937_RS04730	0.20	-0.6
1,043,272	+		DDA3937_RS04730	0.31	+0.9