Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04470 and DDA3937_RS04475 are separated by 309 nucleotides DDA3937_RS04475 and DDA3937_RS04480 are separated by 41 nucleotides DDA3937_RS04480 and DDA3937_RS04485 are separated by 47 nucleotides DDA3937_RS04485 and DDA3937_RS04490 are separated by 406 nucleotides
DDA3937_RS04470: DDA3937_RS04470 - helix-turn-helix transcriptional regulator, at 987,889 to 988,443
_RS04470
DDA3937_RS04475: DDA3937_RS04475 - PTS glucose transporter subunit IIA, at 988,753 to 989,262
_RS04475
DDA3937_RS04480: DDA3937_RS04480 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 989,304 to 991,031
_RS04480
DDA3937_RS04485: DDA3937_RS04485 - phosphocarrier protein Hpr, at 991,079 to 991,336
_RS04485
DDA3937_RS04490: DDA3937_RS04490 - cysteine synthase A, at 991,743 to 992,711
_RS04490
Position (kb) 989
990
991
992 Strain fitness (log2 ratio) -2
-1
0
1 at 988.312 kb on - strand, within DDA3937_RS04470 at 988.368 kb on + strand, within DDA3937_RS04470 at 988.369 kb on - strand, within DDA3937_RS04470 at 988.371 kb on + strand, within DDA3937_RS04470 at 988.371 kb on + strand, within DDA3937_RS04470 at 988.382 kb on - strand, within DDA3937_RS04470 at 988.431 kb on + strand at 988.437 kb on + strand at 988.437 kb on + strand at 988.437 kb on + strand at 988.438 kb on - strand at 988.438 kb on - strand at 988.459 kb on + strand at 988.481 kb on + strand at 988.481 kb on + strand at 988.482 kb on - strand at 988.482 kb on - strand at 988.500 kb on + strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.501 kb on - strand at 988.515 kb on + strand at 988.515 kb on + strand at 988.531 kb on + strand at 988.532 kb on - strand at 988.561 kb on + strand at 988.562 kb on - strand at 988.562 kb on - strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.586 kb on + strand at 988.587 kb on - strand at 988.587 kb on - strand at 988.621 kb on + strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.622 kb on - strand at 988.639 kb on + strand at 988.639 kb on + strand at 988.640 kb on - strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.643 kb on + strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.644 kb on - strand at 988.645 kb on + strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.646 kb on - strand at 988.685 kb on + strand at 988.685 kb on + strand at 988.685 kb on + strand at 988.704 kb on - strand at 988.719 kb on + strand at 988.720 kb on - strand at 988.721 kb on + strand at 988.721 kb on + strand at 988.721 kb on + strand at 988.722 kb on - strand at 988.722 kb on - strand at 988.738 kb on + strand at 988.739 kb on - strand at 988.739 kb on - strand at 988.739 kb on - strand at 988.754 kb on + strand at 989.041 kb on - strand, within DDA3937_RS04475 at 989.274 kb on - strand at 989.284 kb on - strand at 989.284 kb on - strand at 989.338 kb on - strand at 989.350 kb on - strand at 989.350 kb on - strand at 989.408 kb on - strand at 989.498 kb on + strand, within DDA3937_RS04480 at 989.498 kb on + strand, within DDA3937_RS04480 at 989.499 kb on - strand, within DDA3937_RS04480 at 989.612 kb on - strand, within DDA3937_RS04480 at 989.657 kb on - strand, within DDA3937_RS04480 at 989.657 kb on - strand, within DDA3937_RS04480 at 989.664 kb on + strand, within DDA3937_RS04480 at 989.904 kb on - strand, within DDA3937_RS04480 at 989.949 kb on - strand, within DDA3937_RS04480 at 990.002 kb on - strand, within DDA3937_RS04480 at 990.002 kb on - strand, within DDA3937_RS04480 at 990.082 kb on + strand, within DDA3937_RS04480 at 990.280 kb on + strand, within DDA3937_RS04480 at 990.296 kb on - strand, within DDA3937_RS04480 at 990.464 kb on + strand, within DDA3937_RS04480 at 990.465 kb on - strand, within DDA3937_RS04480 at 990.495 kb on - strand, within DDA3937_RS04480 at 990.803 kb on + strand, within DDA3937_RS04480 at 990.804 kb on - strand, within DDA3937_RS04480 at 991.015 kb on - strand at 991.015 kb on - strand at 991.032 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.038 kb on - strand at 991.043 kb on - strand at 991.062 kb on + strand at 991.231 kb on + strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.232 kb on - strand, within DDA3937_RS04485 at 991.319 kb on + strand at 991.319 kb on + strand at 991.320 kb on - strand at 991.320 kb on - strand at 991.361 kb on + strand at 991.380 kb on + strand at 991.380 kb on + strand at 991.381 kb on - strand at 991.387 kb on + strand at 991.388 kb on - strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.392 kb on + strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.393 kb on - strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.396 kb on + strand at 991.397 kb on - strand at 991.397 kb on - strand at 991.401 kb on - strand at 991.406 kb on + strand at 991.407 kb on - strand at 991.561 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.567 kb on + strand at 991.568 kb on - strand at 991.568 kb on - strand at 991.590 kb on + strand at 991.621 kb on - strand at 991.627 kb on + strand at 991.653 kb on + strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.654 kb on - strand at 991.658 kb on - strand at 991.717 kb on - strand at 991.744 kb on + strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.745 kb on - strand at 991.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 988,312 - DDA3937_RS04470 0.76 -1.3 988,368 + DDA3937_RS04470 0.86 -0.2 988,369 - DDA3937_RS04470 0.86 +0.4 988,371 + DDA3937_RS04470 0.87 -0.6 988,371 + DDA3937_RS04470 0.87 +0.5 988,382 - DDA3937_RS04470 0.89 -1.0 988,431 + -0.8 988,437 + +0.0 988,437 + +0.4 988,437 + -0.3 988,438 - +0.0 988,438 - -0.1 988,459 + +0.2 988,481 + -0.2 988,481 + +0.4 988,482 - -1.2 988,482 - -0.7 988,500 + +0.4 988,501 - -0.3 988,501 - +0.2 988,501 - -2.0 988,501 - -1.8 988,515 + -1.3 988,515 + -0.0 988,531 + -1.6 988,532 - -0.9 988,561 + -0.8 988,562 - +1.5 988,562 - -1.0 988,586 + -1.1 988,586 + -0.6 988,586 + -1.4 988,586 + -0.4 988,587 - -0.8 988,587 - -0.4 988,621 + -0.8 988,622 - +0.0 988,622 - -0.1 988,622 - -1.0 988,622 - -0.3 988,639 + +0.8 988,639 + -0.7 988,640 - -1.4 988,643 + -0.0 988,643 + -1.4 988,643 + -1.1 988,643 + +1.0 988,643 + +0.2 988,643 + +0.3 988,643 + +0.6 988,643 + +0.2 988,643 + +0.5 988,644 - -0.8 988,644 - +1.4 988,644 - -0.2 988,644 - -1.3 988,644 - -1.8 988,644 - -0.2 988,645 + +0.0 988,646 - -0.8 988,646 - +1.5 988,646 - -0.8 988,646 - +0.7 988,685 + -0.2 988,685 + -1.2 988,685 + -0.4 988,704 - +1.3 988,719 + -0.3 988,720 - +0.0 988,721 + -0.1 988,721 + -2.1 988,721 + -1.0 988,722 - -2.1 988,722 - +0.9 988,738 + -0.3 988,739 - +0.0 988,739 - -1.8 988,739 - +0.8 988,754 + -1.3 989,041 - DDA3937_RS04475 0.56 +0.0 989,274 - -2.4 989,284 - +0.2 989,284 - -0.5 989,338 - -0.7 989,350 - +0.4 989,350 - -0.3 989,408 - -0.6 989,498 + DDA3937_RS04480 0.11 -0.4 989,498 + DDA3937_RS04480 0.11 -1.0 989,499 - DDA3937_RS04480 0.11 -2.1 989,612 - DDA3937_RS04480 0.18 -0.1 989,657 - DDA3937_RS04480 0.20 -0.9 989,657 - DDA3937_RS04480 0.20 -0.8 989,664 + DDA3937_RS04480 0.21 -2.0 989,904 - DDA3937_RS04480 0.35 -0.4 989,949 - DDA3937_RS04480 0.37 -0.9 990,002 - DDA3937_RS04480 0.40 -1.0 990,002 - DDA3937_RS04480 0.40 +0.4 990,082 + DDA3937_RS04480 0.45 +0.0 990,280 + DDA3937_RS04480 0.56 +1.0 990,296 - DDA3937_RS04480 0.57 -0.6 990,464 + DDA3937_RS04480 0.67 -2.6 990,465 - DDA3937_RS04480 0.67 -0.4 990,495 - DDA3937_RS04480 0.69 -1.5 990,803 + DDA3937_RS04480 0.87 +0.4 990,804 - DDA3937_RS04480 0.87 -0.2 991,015 - -1.6 991,015 - -0.7 991,032 - -1.2 991,038 - -0.2 991,038 - -0.1 991,038 - -1.3 991,038 - -0.6 991,043 - -1.8 991,062 + -0.3 991,231 + DDA3937_RS04485 0.59 +0.9 991,232 - DDA3937_RS04485 0.59 +1.0 991,232 - DDA3937_RS04485 0.59 +0.4 991,319 + -0.4 991,319 + +0.2 991,320 - -0.3 991,320 - +0.1 991,361 + +1.6 991,380 + -0.5 991,380 + -0.3 991,381 - -0.1 991,387 + -0.0 991,388 - +0.4 991,392 + +0.5 991,392 + +0.6 991,392 + -0.0 991,392 + -0.3 991,392 + -2.1 991,392 + +0.2 991,392 + +0.8 991,392 + -0.8 991,392 + +0.4 991,392 + +0.9 991,392 + -0.5 991,392 + +0.4 991,392 + -0.4 991,392 + -0.1 991,392 + -0.8 991,392 + -0.3 991,392 + -1.2 991,392 + -0.6 991,393 - -2.2 991,393 - -1.3 991,393 - +0.8 991,393 - +1.4 991,393 - +1.0 991,393 - -0.3 991,393 - +1.0 991,393 - -0.9 991,396 + -0.4 991,396 + +0.6 991,396 + +0.2 991,396 + -0.1 991,396 + -0.3 991,396 + +0.4 991,396 + -0.3 991,397 - -0.8 991,397 - -0.5 991,401 - -1.1 991,406 + -1.6 991,407 - -0.3 991,561 + -0.2 991,567 + +1.0 991,567 + +0.2 991,567 + -0.4 991,567 + -0.1 991,568 - +0.4 991,568 - +1.0 991,590 + +0.4 991,621 - +1.4 991,627 + +0.3 991,653 + +0.3 991,654 - +1.0 991,654 - -0.7 991,654 - +1.6 991,654 - +1.0 991,658 - +0.4 991,717 - +0.1 991,744 + -0.3 991,745 - -0.4 991,745 - -0.7 991,745 - +0.4 991,790 + +1.6
Or see this region's nucleotide sequence