Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04340 and DDA3937_RS04345 are separated by 158 nucleotides DDA3937_RS04345 and DDA3937_RS04350 are separated by 80 nucleotides DDA3937_RS04350 and DDA3937_RS04355 are separated by 373 nucleotides
DDA3937_RS04340: DDA3937_RS04340 - Nramp family divalent metal transporter, at 953,342 to 954,577
_RS04340
DDA3937_RS04345: DDA3937_RS04345 - GDP-mannose pyrophosphatase NudK, at 954,736 to 955,320
_RS04345
DDA3937_RS04350: DDA3937_RS04350 - transaldolase, at 955,401 to 956,351
_RS04350
DDA3937_RS04355: DDA3937_RS04355 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 956,725 to 959,004
_RS04355
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.505 kb on + strand at 954.505 kb on + strand at 954.505 kb on + strand at 954.511 kb on + strand at 954.512 kb on - strand at 954.526 kb on + strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.527 kb on - strand at 954.548 kb on + strand at 954.664 kb on + strand at 954.665 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.697 kb on - strand at 954.699 kb on + strand at 954.699 kb on + strand at 954.700 kb on - strand at 954.722 kb on - strand at 954.750 kb on + strand at 954.751 kb on - strand at 954.753 kb on + strand at 954.754 kb on - strand at 954.798 kb on + strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.799 kb on - strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.802 kb on + strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.803 kb on - strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.859 kb on + strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.860 kb on - strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.892 kb on + strand, within DDA3937_RS04345 at 954.893 kb on - strand, within DDA3937_RS04345 at 954.917 kb on + strand, within DDA3937_RS04345 at 954.918 kb on - strand, within DDA3937_RS04345 at 954.947 kb on - strand, within DDA3937_RS04345 at 955.029 kb on + strand, within DDA3937_RS04345 at 955.062 kb on - strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.090 kb on + strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.091 kb on - strand, within DDA3937_RS04345 at 955.159 kb on - strand, within DDA3937_RS04345 at 955.192 kb on - strand, within DDA3937_RS04345 at 955.249 kb on - strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.260 kb on + strand, within DDA3937_RS04345 at 955.261 kb on - strand, within DDA3937_RS04345 at 955.329 kb on - strand at 955.340 kb on + strand at 955.341 kb on - strand at 955.346 kb on + strand at 955.346 kb on + strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.403 kb on - strand at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.499 kb on + strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.500 kb on - strand, within DDA3937_RS04350 at 955.717 kb on + strand, within DDA3937_RS04350 at 955.718 kb on - strand, within DDA3937_RS04350 at 955.718 kb on - strand, within DDA3937_RS04350 at 955.718 kb on - strand, within DDA3937_RS04350 at 955.721 kb on - strand, within DDA3937_RS04350 at 955.721 kb on - strand, within DDA3937_RS04350 at 955.726 kb on + strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.727 kb on - strand, within DDA3937_RS04350 at 955.730 kb on + strand, within DDA3937_RS04350 at 955.798 kb on + strand, within DDA3937_RS04350 at 955.807 kb on + strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.808 kb on - strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.837 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.983 kb on + strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 955.984 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand, within DDA3937_RS04350 at 956.000 kb on - strand at 956.000 kb on - strand, within DDA3937_RS04350 at 956.024 kb on + strand at 956.313 kb on + strand at 956.340 kb on + strand at 956.340 kb on + strand at 956.340 kb on + strand at 956.341 kb on - strand at 956.341 kb on - strand at 956.341 kb on - strand at 956.436 kb on + strand at 956.462 kb on + strand at 956.473 kb on - strand at 956.478 kb on + strand at 956.479 kb on - strand at 956.479 kb on - strand at 956.539 kb on + strand at 956.539 kb on + strand at 956.540 kb on - strand at 956.572 kb on + strand at 956.597 kb on + strand at 956.598 kb on - strand at 956.605 kb on + strand at 956.605 kb on + strand at 956.605 kb on + strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.606 kb on - strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.607 kb on + strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.608 kb on - strand at 956.610 kb on + strand at 956.610 kb on + strand at 956.611 kb on - strand at 956.618 kb on - strand at 956.637 kb on - strand at 956.637 kb on - strand at 956.670 kb on + strand at 956.716 kb on + strand at 956.716 kb on + strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.719 kb on + strand at 956.719 kb on + strand at 956.720 kb on - strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.724 kb on + strand at 956.725 kb on - strand at 956.725 kb on - strand at 956.725 kb on - strand at 956.767 kb on + strand at 956.840 kb on - strand at 956.896 kb on + strand at 956.897 kb on - strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.902 kb on + strand at 956.903 kb on - strand at 956.903 kb on - strand at 956.903 kb on - strand at 956.904 kb on + strand at 956.905 kb on - strand at 956.905 kb on - strand at 957.135 kb on + strand, within DDA3937_RS04355 at 957.135 kb on + strand, within DDA3937_RS04355 at 957.135 kb on + strand, within DDA3937_RS04355 at 957.136 kb on - strand, within DDA3937_RS04355 at 957.157 kb on + strand, within DDA3937_RS04355 at 957.157 kb on + strand, within DDA3937_RS04355
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 954,505 + -0.7 954,505 + +0.0 954,505 + -0.2 954,511 + -0.2 954,512 - -0.6 954,526 + +0.8 954,527 - -1.2 954,527 - -1.0 954,527 - -1.1 954,548 + +1.4 954,664 + -0.3 954,665 - -1.8 954,697 - -0.8 954,697 - -0.2 954,697 - -0.6 954,697 - -0.5 954,699 + -0.1 954,699 + -1.0 954,700 - +0.7 954,722 - +0.0 954,750 + -0.4 954,751 - -2.5 954,753 + -0.5 954,754 - -0.3 954,798 + DDA3937_RS04345 0.11 +1.4 954,799 - DDA3937_RS04345 0.11 +0.3 954,799 - DDA3937_RS04345 0.11 -0.4 954,799 - DDA3937_RS04345 0.11 -0.1 954,802 + DDA3937_RS04345 0.11 +0.6 954,802 + DDA3937_RS04345 0.11 -0.2 954,802 + DDA3937_RS04345 0.11 +0.4 954,802 + DDA3937_RS04345 0.11 +0.9 954,802 + DDA3937_RS04345 0.11 -0.1 954,802 + DDA3937_RS04345 0.11 -0.5 954,802 + DDA3937_RS04345 0.11 -0.3 954,802 + DDA3937_RS04345 0.11 +0.1 954,802 + DDA3937_RS04345 0.11 +2.6 954,802 + DDA3937_RS04345 0.11 +1.2 954,803 - DDA3937_RS04345 0.11 -0.5 954,803 - DDA3937_RS04345 0.11 +0.0 954,803 - DDA3937_RS04345 0.11 -0.6 954,803 - DDA3937_RS04345 0.11 -1.5 954,803 - DDA3937_RS04345 0.11 -1.3 954,803 - DDA3937_RS04345 0.11 -0.7 954,803 - DDA3937_RS04345 0.11 +0.2 954,859 + DDA3937_RS04345 0.21 -0.7 954,859 + DDA3937_RS04345 0.21 -0.6 954,859 + DDA3937_RS04345 0.21 +2.5 954,859 + DDA3937_RS04345 0.21 -0.3 954,859 + DDA3937_RS04345 0.21 -0.7 954,859 + DDA3937_RS04345 0.21 +0.0 954,860 - DDA3937_RS04345 0.21 +0.4 954,860 - DDA3937_RS04345 0.21 -1.0 954,860 - DDA3937_RS04345 0.21 +0.3 954,860 - DDA3937_RS04345 0.21 -2.7 954,892 + DDA3937_RS04345 0.27 +0.4 954,892 + DDA3937_RS04345 0.27 -0.4 954,892 + DDA3937_RS04345 0.27 -1.4 954,892 + DDA3937_RS04345 0.27 -1.4 954,893 - DDA3937_RS04345 0.27 -2.4 954,917 + DDA3937_RS04345 0.31 +1.0 954,918 - DDA3937_RS04345 0.31 -0.7 954,947 - DDA3937_RS04345 0.36 -0.1 955,029 + DDA3937_RS04345 0.50 +0.4 955,062 - DDA3937_RS04345 0.56 +1.0 955,090 + DDA3937_RS04345 0.61 -0.2 955,090 + DDA3937_RS04345 0.61 -0.1 955,090 + DDA3937_RS04345 0.61 -1.1 955,090 + DDA3937_RS04345 0.61 +0.6 955,090 + DDA3937_RS04345 0.61 +0.4 955,090 + DDA3937_RS04345 0.61 -1.3 955,090 + DDA3937_RS04345 0.61 +0.5 955,090 + DDA3937_RS04345 0.61 -0.3 955,091 - DDA3937_RS04345 0.61 -0.6 955,091 - DDA3937_RS04345 0.61 -2.0 955,091 - DDA3937_RS04345 0.61 -0.2 955,091 - DDA3937_RS04345 0.61 -0.3 955,091 - DDA3937_RS04345 0.61 -0.4 955,091 - DDA3937_RS04345 0.61 +0.2 955,091 - DDA3937_RS04345 0.61 +0.0 955,091 - DDA3937_RS04345 0.61 -0.1 955,091 - DDA3937_RS04345 0.61 +0.4 955,091 - DDA3937_RS04345 0.61 -0.5 955,159 - DDA3937_RS04345 0.72 +1.0 955,192 - DDA3937_RS04345 0.78 -1.1 955,249 - DDA3937_RS04345 0.88 -0.1 955,260 + DDA3937_RS04345 0.90 +0.2 955,260 + DDA3937_RS04345 0.90 +0.9 955,261 - DDA3937_RS04345 0.90 -0.9 955,329 - -0.6 955,340 + -0.8 955,341 - +0.6 955,346 + -0.4 955,346 + -0.5 955,403 - -0.4 955,403 - +0.0 955,403 - -1.0 955,403 - +0.4 955,499 + DDA3937_RS04350 0.10 +1.3 955,499 + DDA3937_RS04350 0.10 +0.4 955,499 + DDA3937_RS04350 0.10 -0.6 955,500 - DDA3937_RS04350 0.10 +0.0 955,500 - DDA3937_RS04350 0.10 +0.0 955,500 - DDA3937_RS04350 0.10 +0.1 955,717 + DDA3937_RS04350 0.33 +1.8 955,718 - DDA3937_RS04350 0.33 -0.6 955,718 - DDA3937_RS04350 0.33 +0.0 955,718 - DDA3937_RS04350 0.33 +0.2 955,721 - DDA3937_RS04350 0.34 -0.3 955,721 - DDA3937_RS04350 0.34 -1.2 955,726 + DDA3937_RS04350 0.34 +0.0 955,727 - DDA3937_RS04350 0.34 +0.4 955,727 - DDA3937_RS04350 0.34 +0.2 955,727 - DDA3937_RS04350 0.34 -0.6 955,727 - DDA3937_RS04350 0.34 +0.3 955,727 - DDA3937_RS04350 0.34 +0.4 955,730 + DDA3937_RS04350 0.35 +0.4 955,798 + DDA3937_RS04350 0.42 -0.1 955,807 + DDA3937_RS04350 0.43 -1.9 955,808 - DDA3937_RS04350 0.43 +0.1 955,808 - DDA3937_RS04350 0.43 -0.3 955,837 + DDA3937_RS04350 0.46 -1.1 955,837 + DDA3937_RS04350 0.46 -0.5 955,983 + DDA3937_RS04350 0.61 -1.8 955,983 + DDA3937_RS04350 0.61 -0.6 955,983 + DDA3937_RS04350 0.61 +0.4 955,983 + DDA3937_RS04350 0.61 +0.5 955,983 + DDA3937_RS04350 0.61 +0.4 955,983 + DDA3937_RS04350 0.61 +0.1 955,984 - DDA3937_RS04350 0.61 +0.5 955,984 - DDA3937_RS04350 0.61 +1.1 956,000 - DDA3937_RS04350 0.63 +1.3 956,000 - +0.4 956,000 - DDA3937_RS04350 0.63 -0.5 956,024 + +0.4 956,313 + -2.0 956,340 + +0.2 956,340 + -0.5 956,340 + -0.1 956,341 - +0.3 956,341 - -1.1 956,341 - +0.0 956,436 + -0.1 956,462 + -0.0 956,473 - -1.6 956,478 + -0.8 956,479 - -0.2 956,479 - -0.1 956,539 + +1.0 956,539 + -0.2 956,540 - -0.4 956,572 + +0.0 956,597 + -0.4 956,598 - -0.3 956,605 + +2.4 956,605 + -0.6 956,605 + -2.1 956,606 - +0.3 956,606 - +0.8 956,606 - +0.9 956,606 - +0.3 956,606 - -0.8 956,606 - -1.0 956,607 + -1.1 956,607 + +0.1 956,607 + +0.4 956,607 + +0.1 956,607 + +0.8 956,607 + -0.9 956,608 - -0.2 956,608 - -0.7 956,608 - -0.2 956,608 - -0.2 956,610 + -1.0 956,610 + +0.8 956,611 - -0.2 956,618 - +1.0 956,637 - -0.3 956,637 - -0.2 956,670 + +0.6 956,716 + -0.2 956,716 + -0.5 956,717 - -0.6 956,717 - -1.3 956,717 - +0.0 956,719 + +0.6 956,719 + -2.1 956,720 - -1.0 956,724 + +0.2 956,724 + -1.1 956,724 + -0.5 956,724 + -1.5 956,725 - +0.3 956,725 - -0.2 956,725 - -0.0 956,767 + -1.0 956,840 - +0.4 956,896 + -0.0 956,897 - +0.6 956,902 + +0.6 956,902 + -0.1 956,902 + -0.1 956,902 + -0.3 956,903 - +1.2 956,903 - -0.3 956,903 - -0.6 956,904 + -0.5 956,905 - +1.4 956,905 - +0.3 957,135 + DDA3937_RS04355 0.18 -0.6 957,135 + DDA3937_RS04355 0.18 -0.6 957,135 + DDA3937_RS04355 0.18 -1.4 957,136 - DDA3937_RS04355 0.18 -0.3 957,157 + DDA3937_RS04355 0.19 +0.3 957,157 + DDA3937_RS04355 0.19 -0.6
Or see this region's nucleotide sequence