Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04110 and DDA3937_RS04115 are separated by 840 nucleotides DDA3937_RS04115 and DDA3937_RS04120 are separated by 107 nucleotides DDA3937_RS04120 and DDA3937_RS04125 overlap by 23 nucleotides
DDA3937_RS04110: DDA3937_RS04110 - Hcp family type VI secretion system effector, at 914,093 to 914,611
_RS04110
DDA3937_RS04115: DDA3937_RS04115 - site-specific integrase, at 915,452 to 916,543
_RS04115
DDA3937_RS04120: DDA3937_RS04120 - ASCH domain-containing protein, at 916,651 to 917,022
_RS04120
DDA3937_RS04125: DDA3937_RS04125 - acetyltransferase, at 917,000 to 918,073
_RS04125
Position (kb) 915
916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 914.595 kb on + strand at 914.595 kb on + strand at 914.611 kb on + strand at 914.611 kb on + strand at 914.639 kb on - strand at 914.726 kb on + strand at 914.796 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.867 kb on + strand at 914.868 kb on - strand at 915.033 kb on - strand at 915.068 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.103 kb on - strand at 915.103 kb on - strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.146 kb on - strand at 915.151 kb on + strand at 915.152 kb on - strand at 915.154 kb on + strand at 915.155 kb on - strand at 915.179 kb on - strand at 915.191 kb on + strand at 915.192 kb on - strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.267 kb on - strand at 915.267 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.283 kb on - strand at 915.321 kb on + strand at 915.321 kb on + strand at 915.399 kb on + strand at 915.553 kb on + strand at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115 at 915.647 kb on + strand, within DDA3937_RS04115 at 915.647 kb on + strand, within DDA3937_RS04115 at 915.648 kb on - strand at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.648 kb on - strand, within DDA3937_RS04115 at 915.649 kb on + strand, within DDA3937_RS04115 at 915.649 kb on + strand, within DDA3937_RS04115 at 915.649 kb on + strand, within DDA3937_RS04115 at 915.650 kb on - strand, within DDA3937_RS04115 at 915.650 kb on - strand, within DDA3937_RS04115 at 915.650 kb on - strand, within DDA3937_RS04115 at 915.695 kb on + strand, within DDA3937_RS04115 at 915.695 kb on + strand, within DDA3937_RS04115 at 915.696 kb on - strand, within DDA3937_RS04115 at 915.791 kb on - strand, within DDA3937_RS04115 at 915.791 kb on - strand, within DDA3937_RS04115 at 915.807 kb on + strand, within DDA3937_RS04115 at 915.807 kb on + strand, within DDA3937_RS04115 at 915.808 kb on - strand, within DDA3937_RS04115 at 915.808 kb on - strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.861 kb on + strand, within DDA3937_RS04115 at 915.862 kb on - strand, within DDA3937_RS04115 at 915.862 kb on - strand, within DDA3937_RS04115 at 915.862 kb on - strand, within DDA3937_RS04115 at 915.896 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.938 kb on + strand, within DDA3937_RS04115 at 915.939 kb on - strand, within DDA3937_RS04115 at 915.939 kb on - strand at 915.939 kb on - strand, within DDA3937_RS04115 at 915.939 kb on - strand, within DDA3937_RS04115 at 915.939 kb on - strand, within DDA3937_RS04115 at 916.001 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.040 kb on + strand, within DDA3937_RS04115 at 916.041 kb on - strand, within DDA3937_RS04115 at 916.122 kb on - strand, within DDA3937_RS04115 at 916.283 kb on - strand, within DDA3937_RS04115 at 916.307 kb on - strand, within DDA3937_RS04115 at 916.366 kb on + strand, within DDA3937_RS04115 at 916.453 kb on + strand at 916.498 kb on - strand at 916.531 kb on + strand at 916.531 kb on + strand at 916.532 kb on - strand at 916.543 kb on + strand at 916.543 kb on + strand at 916.543 kb on + strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.544 kb on - strand at 916.556 kb on + strand at 916.557 kb on - strand at 916.557 kb on - strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.571 kb on + strand at 916.572 kb on - strand at 916.572 kb on - strand at 916.572 kb on - strand at 916.575 kb on + strand at 916.575 kb on + strand at 916.575 kb on + strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.576 kb on - strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.602 kb on + strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.603 kb on - strand at 916.652 kb on + strand at 916.652 kb on + strand at 916.653 kb on - strand at 916.653 kb on - strand at 917.015 kb on - strand at 917.208 kb on - strand, within DDA3937_RS04125 at 917.332 kb on - strand, within DDA3937_RS04125 at 917.332 kb on - strand, within DDA3937_RS04125 at 917.397 kb on - strand, within DDA3937_RS04125 at 917.443 kb on - strand, within DDA3937_RS04125 at 917.459 kb on - strand, within DDA3937_RS04125 at 917.459 kb on - strand, within DDA3937_RS04125
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 914,595 + +0.2 914,595 + -1.9 914,611 + +0.2 914,611 + +0.6 914,639 - -0.9 914,726 + -0.4 914,796 + -2.9 914,864 + -0.8 914,864 + -0.1 914,864 + +0.7 914,867 + +0.7 914,868 - +1.1 915,033 - -0.5 915,068 + -0.3 915,102 + +1.2 915,102 + +0.1 915,102 + +0.6 915,102 + -0.9 915,103 - -1.7 915,103 - -1.2 915,141 + -1.3 915,141 + -1.8 915,141 + -1.8 915,141 + +1.2 915,141 + +0.5 915,141 + -0.5 915,141 + -0.3 915,142 - -0.4 915,142 - +0.8 915,142 - -1.5 915,146 - -0.0 915,151 + -0.0 915,152 - -1.2 915,154 + -0.6 915,155 - -1.5 915,179 - +0.1 915,191 + +0.5 915,192 - +0.5 915,266 + +0.8 915,266 + -0.9 915,266 + -0.0 915,266 + +0.6 915,266 + -0.7 915,267 - +1.3 915,267 - -0.5 915,281 - -0.2 915,281 - +0.4 915,281 - -0.0 915,281 - -0.3 915,283 - -1.9 915,321 + +0.6 915,321 + +0.2 915,399 + -0.0 915,553 + +1.1 915,594 + DDA3937_RS04115 0.13 -0.3 915,594 + DDA3937_RS04115 0.13 -0.3 915,594 + DDA3937_RS04115 0.13 -0.2 915,595 - DDA3937_RS04115 0.13 +0.1 915,595 - DDA3937_RS04115 0.13 -0.5 915,647 + DDA3937_RS04115 0.18 +0.4 915,647 + DDA3937_RS04115 0.18 -1.2 915,648 - +1.1 915,648 - DDA3937_RS04115 0.18 -0.3 915,648 - DDA3937_RS04115 0.18 -0.3 915,648 - DDA3937_RS04115 0.18 -1.4 915,648 - DDA3937_RS04115 0.18 -0.2 915,648 - DDA3937_RS04115 0.18 -0.4 915,648 - DDA3937_RS04115 0.18 -1.2 915,649 + DDA3937_RS04115 0.18 +0.1 915,649 + DDA3937_RS04115 0.18 -0.5 915,649 + DDA3937_RS04115 0.18 +0.6 915,650 - DDA3937_RS04115 0.18 +0.1 915,650 - DDA3937_RS04115 0.18 -0.5 915,650 - DDA3937_RS04115 0.18 -0.3 915,695 + DDA3937_RS04115 0.22 +0.5 915,695 + DDA3937_RS04115 0.22 -0.4 915,696 - DDA3937_RS04115 0.22 -0.2 915,791 - DDA3937_RS04115 0.31 -1.1 915,791 - DDA3937_RS04115 0.31 -2.3 915,807 + DDA3937_RS04115 0.33 -0.1 915,807 + DDA3937_RS04115 0.33 -1.1 915,808 - DDA3937_RS04115 0.33 -0.5 915,808 - DDA3937_RS04115 0.33 +0.6 915,861 + DDA3937_RS04115 0.37 -0.9 915,861 + DDA3937_RS04115 0.37 +0.9 915,861 + DDA3937_RS04115 0.37 -1.2 915,861 + DDA3937_RS04115 0.37 +1.4 915,862 - DDA3937_RS04115 0.38 -0.3 915,862 - DDA3937_RS04115 0.38 -0.4 915,862 - DDA3937_RS04115 0.38 -0.7 915,896 + DDA3937_RS04115 0.41 -0.8 915,938 + DDA3937_RS04115 0.45 +0.1 915,938 + DDA3937_RS04115 0.45 -1.2 915,938 + DDA3937_RS04115 0.45 -0.9 915,938 + DDA3937_RS04115 0.45 -0.8 915,939 - DDA3937_RS04115 0.45 -1.3 915,939 - +1.9 915,939 - DDA3937_RS04115 0.45 -0.1 915,939 - DDA3937_RS04115 0.45 +0.0 915,939 - DDA3937_RS04115 0.45 -0.1 916,001 + DDA3937_RS04115 0.50 -0.7 916,040 + DDA3937_RS04115 0.54 -1.9 916,040 + DDA3937_RS04115 0.54 +0.1 916,040 + DDA3937_RS04115 0.54 -1.0 916,041 - DDA3937_RS04115 0.54 -0.3 916,122 - DDA3937_RS04115 0.61 -0.7 916,283 - DDA3937_RS04115 0.76 -0.2 916,307 - DDA3937_RS04115 0.78 +0.3 916,366 + DDA3937_RS04115 0.84 -0.9 916,453 + -0.8 916,498 - +0.3 916,531 + -0.3 916,531 + -0.5 916,532 - -1.8 916,543 + -0.5 916,543 + -0.2 916,543 + -0.8 916,544 - +0.4 916,544 - +0.3 916,544 - -0.8 916,544 - -0.4 916,556 + -0.3 916,557 - -0.2 916,557 - -0.3 916,571 + -0.2 916,571 + -0.1 916,571 + +0.3 916,571 + -0.9 916,571 + -1.9 916,571 + -0.4 916,571 + -1.3 916,572 - +1.1 916,572 - -0.8 916,572 - -0.1 916,575 + -0.6 916,575 + +1.2 916,575 + -0.4 916,576 - +0.5 916,576 - -1.5 916,576 - -0.5 916,576 - +0.2 916,602 + -1.9 916,602 + +0.1 916,602 + -0.3 916,602 + -0.4 916,602 + +0.1 916,602 + +0.5 916,602 + -1.8 916,602 + +0.2 916,602 + -1.5 916,602 + -0.2 916,602 + -1.3 916,602 + +1.7 916,603 - -1.8 916,603 - +0.1 916,603 - -1.0 916,603 - +0.2 916,603 - +0.2 916,603 - +0.3 916,652 + -0.5 916,652 + -0.4 916,653 - -1.8 916,653 - -0.8 917,015 - -1.9 917,208 - DDA3937_RS04125 0.19 -3.3 917,332 - DDA3937_RS04125 0.31 -2.3 917,332 - DDA3937_RS04125 0.31 -1.9 917,397 - DDA3937_RS04125 0.37 -1.4 917,443 - DDA3937_RS04125 0.41 -2.3 917,459 - DDA3937_RS04125 0.43 -2.3 917,459 - DDA3937_RS04125 0.43 +0.1
Or see this region's nucleotide sequence