Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04040 and DDA3937_RS04045 overlap by 4 nucleotides DDA3937_RS04045 and DDA3937_RS04050 are separated by 474 nucleotides DDA3937_RS04050 and DDA3937_RS04055 overlap by 4 nucleotides DDA3937_RS04055 and DDA3937_RS21905 overlap by 1 nucleotides
DDA3937_RS04040: DDA3937_RS04040 - type II toxin-antitoxin system RelE/ParE family toxin, at 901,385 to 901,696
_RS04040
DDA3937_RS04045: DDA3937_RS04045 - DNA-damage-inducible protein J, at 901,693 to 901,977
_RS04045
DDA3937_RS04050: DDA3937_RS04050 - AAA family ATPase, at 902,452 to 903,081
_RS04050
DDA3937_RS04055: DDA3937_RS04055 - hypothetical protein, at 903,078 to 903,527
_RS04055
DDA3937_RS21905: DDA3937_RS21905 - restriction endonuclease, at 903,527 to 904,039
_RS21905
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 901.473 kb on + strand, within DDA3937_RS04040 at 901.473 kb on + strand, within DDA3937_RS04040 at 901.483 kb on + strand, within DDA3937_RS04040 at 901.664 kb on - strand, within DDA3937_RS04040 at 901.929 kb on + strand at 901.966 kb on + strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.967 kb on - strand at 901.990 kb on + strand at 902.026 kb on + strand at 902.079 kb on + strand at 902.080 kb on - strand at 902.134 kb on + strand at 902.134 kb on + strand at 902.135 kb on - strand at 902.135 kb on - strand at 902.135 kb on - strand at 902.137 kb on + strand at 902.138 kb on - strand at 902.162 kb on + strand at 902.162 kb on + strand at 902.181 kb on + strand at 902.181 kb on + strand at 902.221 kb on + strand at 902.221 kb on + strand at 902.227 kb on + strand at 902.235 kb on + strand at 902.235 kb on + strand at 902.236 kb on - strand at 902.239 kb on + strand at 902.239 kb on + strand at 902.239 kb on + strand at 902.240 kb on - strand at 902.240 kb on - strand at 902.240 kb on - strand at 902.240 kb on - strand at 902.242 kb on - strand at 902.245 kb on + strand at 902.245 kb on + strand at 902.249 kb on + strand at 902.261 kb on - strand at 902.296 kb on - strand at 902.296 kb on - strand at 902.298 kb on - strand at 902.298 kb on - strand at 902.298 kb on - strand at 902.348 kb on + strand at 902.379 kb on - strand at 902.397 kb on + strand at 902.406 kb on + strand at 902.407 kb on - strand at 902.435 kb on - strand at 902.436 kb on + strand at 902.436 kb on + strand at 902.436 kb on + strand at 902.437 kb on - strand at 902.437 kb on - strand at 902.437 kb on - strand at 902.438 kb on + strand at 902.439 kb on - strand at 902.440 kb on + strand at 902.469 kb on + strand at 902.514 kb on + strand at 902.580 kb on + strand, within DDA3937_RS04050 at 902.602 kb on - strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.622 kb on + strand, within DDA3937_RS04050 at 902.730 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.773 kb on - strand, within DDA3937_RS04050 at 902.781 kb on + strand, within DDA3937_RS04050 at 902.784 kb on - strand, within DDA3937_RS04050 at 902.826 kb on + strand, within DDA3937_RS04050 at 902.829 kb on + strand, within DDA3937_RS04050 at 902.899 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.912 kb on + strand, within DDA3937_RS04050 at 902.972 kb on + strand, within DDA3937_RS04050 at 903.040 kb on - strand at 903.040 kb on - strand at 903.553 kb on - strand at 903.579 kb on + strand, within DDA3937_RS21905 at 903.582 kb on - strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.687 kb on + strand, within DDA3937_RS21905 at 903.688 kb on - strand, within DDA3937_RS21905 at 903.696 kb on + strand, within DDA3937_RS21905 at 903.697 kb on - strand, within DDA3937_RS21905 at 903.724 kb on + strand, within DDA3937_RS21905 at 903.738 kb on + strand, within DDA3937_RS21905 at 903.751 kb on - strand, within DDA3937_RS21905 at 903.755 kb on - strand, within DDA3937_RS21905 at 903.802 kb on + strand, within DDA3937_RS21905 at 903.828 kb on + strand, within DDA3937_RS21905 at 903.843 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.885 kb on + strand, within DDA3937_RS21905 at 903.921 kb on - strand, within DDA3937_RS21905 at 903.925 kb on + strand, within DDA3937_RS21905 at 903.927 kb on + strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.928 kb on - strand, within DDA3937_RS21905 at 903.979 kb on - strand, within DDA3937_RS21905 at 904.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 901,473 + DDA3937_RS04040 0.28 +1.6 901,473 + DDA3937_RS04040 0.28 -0.9 901,483 + DDA3937_RS04040 0.31 -0.2 901,664 - DDA3937_RS04040 0.89 +0.9 901,929 + -1.3 901,966 + +1.4 901,967 - +0.3 901,967 - +0.9 901,967 - +0.3 901,967 - +0.9 901,967 - -0.2 901,967 - -0.2 901,967 - +0.1 901,967 - +0.4 901,967 - -1.4 901,990 + -0.6 902,026 + -0.6 902,079 + -0.2 902,080 - -1.0 902,134 + -0.7 902,134 + -0.5 902,135 - +0.2 902,135 - -1.1 902,135 - -0.7 902,137 + -1.7 902,138 - -0.1 902,162 + +1.0 902,162 + +0.2 902,181 + +0.5 902,181 + -0.5 902,221 + -0.2 902,221 + -2.1 902,227 + -0.9 902,235 + -0.2 902,235 + -0.1 902,236 - -0.3 902,239 + +0.4 902,239 + -0.3 902,239 + +1.3 902,240 - +2.6 902,240 - -1.9 902,240 - -1.4 902,240 - -0.2 902,242 - -0.1 902,245 + -0.7 902,245 + -0.2 902,249 + -0.1 902,261 - -3.3 902,296 - +0.6 902,296 - -1.1 902,298 - -0.8 902,298 - -2.7 902,298 - -1.5 902,348 + +0.1 902,379 - +0.3 902,397 + -2.4 902,406 + -1.1 902,407 - -2.6 902,435 - -0.2 902,436 + -1.1 902,436 + -2.1 902,436 + -1.3 902,437 - -0.1 902,437 - -1.1 902,437 - -0.7 902,438 + -0.6 902,439 - -0.7 902,440 + -2.6 902,469 + -0.5 902,514 + -0.0 902,580 + DDA3937_RS04050 0.20 -0.3 902,602 - DDA3937_RS04050 0.24 -1.1 902,622 + DDA3937_RS04050 0.27 -0.6 902,622 + DDA3937_RS04050 0.27 -0.9 902,730 - DDA3937_RS04050 0.44 +0.1 902,773 - DDA3937_RS04050 0.51 -1.3 902,773 - DDA3937_RS04050 0.51 +1.1 902,781 + DDA3937_RS04050 0.52 +0.7 902,784 - DDA3937_RS04050 0.53 -0.1 902,826 + DDA3937_RS04050 0.59 -0.9 902,829 + DDA3937_RS04050 0.60 +0.6 902,899 + DDA3937_RS04050 0.71 -0.1 902,912 + DDA3937_RS04050 0.73 -0.5 902,912 + DDA3937_RS04050 0.73 +0.1 902,912 + DDA3937_RS04050 0.73 +0.1 902,912 + DDA3937_RS04050 0.73 -0.9 902,972 + DDA3937_RS04050 0.83 -1.2 903,040 - +0.1 903,040 - -1.3 903,553 - -0.3 903,579 + DDA3937_RS21905 0.10 -1.3 903,582 - DDA3937_RS21905 0.11 -0.2 903,687 + DDA3937_RS21905 0.31 -1.8 903,687 + DDA3937_RS21905 0.31 -0.7 903,687 + DDA3937_RS21905 0.31 -1.7 903,688 - DDA3937_RS21905 0.31 -0.4 903,696 + DDA3937_RS21905 0.33 -0.2 903,697 - DDA3937_RS21905 0.33 -1.2 903,724 + DDA3937_RS21905 0.38 -0.9 903,738 + DDA3937_RS21905 0.41 -0.5 903,751 - DDA3937_RS21905 0.44 -1.0 903,755 - DDA3937_RS21905 0.44 +0.7 903,802 + DDA3937_RS21905 0.54 -0.5 903,828 + DDA3937_RS21905 0.59 +1.1 903,843 + DDA3937_RS21905 0.62 -0.9 903,885 + DDA3937_RS21905 0.70 +0.3 903,885 + DDA3937_RS21905 0.70 +0.3 903,921 - DDA3937_RS21905 0.77 +0.1 903,925 + DDA3937_RS21905 0.78 -0.2 903,927 + DDA3937_RS21905 0.78 -0.8 903,928 - DDA3937_RS21905 0.78 -2.3 903,928 - DDA3937_RS21905 0.78 +0.1 903,979 - DDA3937_RS21905 0.88 -0.7 904,070 + -0.1
Or see this region's nucleotide sequence