Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21890 and DDA3937_RS03965 are separated by 37 nucleotides DDA3937_RS03965 and DDA3937_RS03970 are separated by 630 nucleotides
DDA3937_RS21890: DDA3937_RS21890 - DUF3363 domain-containing protein, at 886,509 to 886,736
_RS21890
DDA3937_RS03965: DDA3937_RS03965 - helix-turn-helix transcriptional regulator, at 886,774 to 887,124
_RS03965
DDA3937_RS03970: DDA3937_RS03970 - helix-turn-helix transcriptional regulator, at 887,755 to 888,093
_RS03970
Position (kb) 886
887
888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 885.778 kb on - strand at 885.780 kb on - strand at 885.787 kb on - strand at 885.787 kb on - strand at 885.817 kb on - strand at 885.817 kb on - strand at 885.851 kb on - strand at 885.851 kb on - strand at 885.877 kb on - strand at 885.877 kb on - strand at 885.881 kb on + strand at 885.881 kb on + strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.882 kb on - strand at 885.890 kb on - strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.901 kb on + strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.902 kb on - strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.909 kb on + strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.910 kb on - strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.927 kb on + strand at 885.928 kb on - strand at 885.936 kb on + strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.937 kb on - strand at 885.952 kb on - strand at 885.960 kb on + strand at 885.961 kb on - strand at 885.961 kb on - strand at 885.961 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.029 kb on - strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.034 kb on + strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.035 kb on - strand at 886.046 kb on - strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.057 kb on + strand at 886.058 kb on - strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.069 kb on + strand at 886.070 kb on - strand at 886.112 kb on - strand at 886.152 kb on - strand at 886.152 kb on - strand at 886.159 kb on + strand at 886.159 kb on + strand at 886.160 kb on - strand at 886.180 kb on + strand at 886.180 kb on + strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.181 kb on - strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.182 kb on + strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.183 kb on - strand at 886.266 kb on + strand at 886.266 kb on + strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.267 kb on - strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.270 kb on + strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.271 kb on - strand at 886.291 kb on - strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.294 kb on + strand at 886.295 kb on - strand at 886.330 kb on + strand at 886.331 kb on - strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.351 kb on + strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.352 kb on - strand at 886.364 kb on + strand at 886.364 kb on + strand at 886.365 kb on - strand at 886.365 kb on - strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.373 kb on + strand at 886.374 kb on - strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.391 kb on + strand at 886.392 kb on - strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.395 kb on + strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.396 kb on - strand at 886.398 kb on - strand at 886.398 kb on - strand at 886.406 kb on + strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.438 kb on - strand at 886.441 kb on + strand at 886.442 kb on - strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.490 kb on + strand at 886.491 kb on - strand at 886.500 kb on + strand at 886.500 kb on + strand at 886.501 kb on - strand at 886.501 kb on - strand at 886.504 kb on + strand at 886.504 kb on + strand at 886.505 kb on - strand at 886.510 kb on + strand at 886.510 kb on + strand at 886.511 kb on - strand at 886.511 kb on - strand at 886.515 kb on + strand at 886.516 kb on - strand at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.541 kb on + strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.542 kb on - strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.554 kb on + strand, within DDA3937_RS21890 at 886.555 kb on - strand, within DDA3937_RS21890 at 886.654 kb on + strand, within DDA3937_RS21890 at 886.682 kb on + strand, within DDA3937_RS21890 at 886.685 kb on + strand, within DDA3937_RS21890 at 886.775 kb on + strand at 886.776 kb on - strand at 886.776 kb on - strand at 886.786 kb on - strand at 886.786 kb on - strand at 886.830 kb on - strand, within DDA3937_RS03965 at 886.868 kb on + strand, within DDA3937_RS03965 at 886.868 kb on + strand, within DDA3937_RS03965 at 886.868 kb on + strand, within DDA3937_RS03965 at 886.869 kb on - strand, within DDA3937_RS03965 at 886.874 kb on + strand, within DDA3937_RS03965 at 886.875 kb on - strand, within DDA3937_RS03965 at 887.067 kb on + strand, within DDA3937_RS03965 at 887.067 kb on + strand, within DDA3937_RS03965 at 887.068 kb on - strand, within DDA3937_RS03965 at 887.098 kb on + strand at 887.185 kb on - strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.227 kb on + strand at 887.228 kb on - strand at 887.228 kb on - strand at 887.228 kb on - strand at 887.228 kb on - strand at 887.291 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.391 kb on + strand at 887.394 kb on + strand at 887.394 kb on + strand at 887.394 kb on + strand at 887.394 kb on + strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.395 kb on - strand at 887.450 kb on + strand at 887.450 kb on + strand at 887.450 kb on + strand at 887.450 kb on + strand at 887.470 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.483 kb on + strand at 887.484 kb on - strand at 887.484 kb on - strand at 887.484 kb on - strand at 887.484 kb on - strand at 887.487 kb on + strand at 887.487 kb on + strand at 887.487 kb on + strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.488 kb on - strand at 887.499 kb on + strand at 887.500 kb on - strand at 887.618 kb on + strand at 887.618 kb on + strand at 887.619 kb on - strand at 887.619 kb on - strand at 887.641 kb on + strand at 887.657 kb on + strand at 887.658 kb on - strand at 887.658 kb on - strand at 887.678 kb on + strand at 887.679 kb on - strand at 887.679 kb on - strand at 887.679 kb on - strand at 887.679 kb on - strand at 887.710 kb on - strand at 887.714 kb on + strand at 887.714 kb on + strand at 887.718 kb on + strand at 887.718 kb on + strand at 887.718 kb on + strand at 887.718 kb on + strand at 887.719 kb on - strand at 887.741 kb on - strand at 887.825 kb on + strand, within DDA3937_RS03970 at 887.826 kb on - strand, within DDA3937_RS03970 at 887.864 kb on + strand, within DDA3937_RS03970 at 887.865 kb on - strand, within DDA3937_RS03970 at 887.870 kb on + strand, within DDA3937_RS03970 at 887.870 kb on + strand, within DDA3937_RS03970 at 887.870 kb on + strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.871 kb on - strand, within DDA3937_RS03970 at 887.946 kb on - strand, within DDA3937_RS03970 at 888.013 kb on + strand, within DDA3937_RS03970 at 888.013 kb on + strand, within DDA3937_RS03970 at 888.030 kb on + strand, within DDA3937_RS03970 at 888.031 kb on - strand, within DDA3937_RS03970 at 888.076 kb on + strand at 888.076 kb on + strand at 888.077 kb on - strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.094 kb on + strand at 888.095 kb on - strand at 888.095 kb on - strand at 888.095 kb on - strand at 888.095 kb on - strand at 888.095 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 885,778 - -0.2 885,780 - -0.1 885,787 - -0.4 885,787 - +0.0 885,817 - -0.2 885,817 - -0.5 885,851 - -0.3 885,851 - -0.1 885,877 - -1.3 885,877 - +0.1 885,881 + -0.7 885,881 + +0.2 885,882 - -1.7 885,882 - +1.4 885,882 - -1.4 885,890 - -0.9 885,901 + -0.1 885,901 + +0.6 885,901 + -0.6 885,901 + +1.4 885,901 + -0.4 885,901 + +0.0 885,902 - -2.6 885,902 - +0.3 885,902 - -0.4 885,902 - -0.6 885,902 - +0.8 885,902 - -0.8 885,902 - +1.1 885,909 + -1.5 885,909 + -0.8 885,909 + +1.2 885,909 + -2.2 885,910 - +0.8 885,910 - -0.2 885,910 - +0.5 885,927 + -0.3 885,927 + -0.1 885,927 + -0.7 885,928 - -1.6 885,936 + -0.2 885,937 - -0.7 885,937 - -0.2 885,937 - -0.5 885,952 - -0.5 885,960 + +0.5 885,961 - +0.1 885,961 - -1.4 885,961 - -0.3 886,029 - -1.3 886,029 - +1.0 886,029 - -0.6 886,029 - -1.0 886,034 + -0.2 886,034 + +0.1 886,034 + +0.3 886,034 + +0.4 886,034 + +0.9 886,034 + -0.8 886,034 + +0.3 886,035 - -0.0 886,035 - -0.4 886,035 - +0.3 886,035 - -1.2 886,035 - -0.9 886,035 - +0.6 886,046 - -2.8 886,057 + -2.5 886,057 + -0.4 886,057 + -2.2 886,057 + +0.9 886,058 - -2.6 886,069 + -0.3 886,069 + -0.0 886,069 + -0.3 886,069 + +0.4 886,070 - -0.3 886,112 - +0.3 886,152 - -0.3 886,152 - +1.2 886,159 + +1.4 886,159 + -0.5 886,160 - -1.0 886,180 + -0.2 886,180 + -0.3 886,181 - +0.1 886,181 - -0.4 886,181 - -0.3 886,182 + +1.1 886,182 + +0.4 886,182 + +0.5 886,182 + -1.1 886,182 + -0.3 886,182 + -0.3 886,182 + -0.1 886,182 + -0.3 886,183 - -0.6 886,183 - +1.4 886,183 - +1.4 886,183 - -0.6 886,183 - -0.7 886,183 - +0.2 886,266 + -0.1 886,266 + -0.9 886,267 - -2.3 886,267 - +1.1 886,267 - -0.2 886,267 - -1.2 886,270 + -0.8 886,270 + +0.2 886,270 + -0.9 886,271 - +0.5 886,271 - -1.5 886,271 - +0.2 886,291 - -0.8 886,294 + -0.5 886,294 + +0.5 886,294 + -1.1 886,294 + -0.4 886,295 - -1.1 886,330 + +2.1 886,331 - -1.5 886,351 + +0.1 886,351 + -0.9 886,351 + +0.2 886,351 + -0.3 886,351 + -0.7 886,351 + -1.9 886,351 + -1.5 886,352 - +0.6 886,352 - +0.6 886,352 - -1.7 886,352 - -0.0 886,352 - -0.8 886,352 - +0.2 886,364 + -1.2 886,364 + -0.3 886,365 - -1.0 886,365 - +0.2 886,373 + +0.3 886,373 + -0.4 886,373 + -0.4 886,374 - -1.3 886,391 + +0.3 886,391 + +0.3 886,391 + -1.1 886,392 - +1.1 886,395 + -0.8 886,395 + -2.3 886,395 + -0.9 886,395 + -0.5 886,395 + -2.0 886,395 + -0.1 886,395 + +0.4 886,395 + -1.3 886,395 + +0.1 886,396 - +0.2 886,396 - -1.9 886,396 - +0.1 886,396 - -1.1 886,396 - -0.6 886,396 - +0.1 886,396 - +0.6 886,396 - -0.4 886,396 - -0.2 886,396 - -0.3 886,396 - +0.1 886,396 - -0.8 886,398 - +0.2 886,398 - +0.1 886,406 + -0.8 886,438 - -1.5 886,438 - -0.2 886,438 - +0.4 886,441 + -0.1 886,442 - -0.7 886,490 + -1.0 886,490 + -0.5 886,490 + -0.4 886,490 + -0.7 886,491 - +0.4 886,500 + -1.8 886,500 + +0.5 886,501 - -0.4 886,501 - +0.2 886,504 + +0.3 886,504 + -0.7 886,505 - -1.7 886,510 + -0.6 886,510 + -0.4 886,511 - -0.3 886,511 - +1.1 886,515 + +1.8 886,516 - -0.5 886,541 + DDA3937_RS21890 0.14 -0.0 886,541 + DDA3937_RS21890 0.14 +0.9 886,541 + DDA3937_RS21890 0.14 +0.3 886,541 + DDA3937_RS21890 0.14 -0.2 886,542 - DDA3937_RS21890 0.14 +0.5 886,542 - DDA3937_RS21890 0.14 +1.1 886,554 + DDA3937_RS21890 0.20 +0.2 886,554 + DDA3937_RS21890 0.20 +1.4 886,554 + DDA3937_RS21890 0.20 -0.4 886,555 - DDA3937_RS21890 0.20 -2.1 886,654 + DDA3937_RS21890 0.64 +0.6 886,682 + DDA3937_RS21890 0.76 +0.3 886,685 + DDA3937_RS21890 0.77 -0.7 886,775 + +2.1 886,776 - -0.0 886,776 - +0.6 886,786 - -1.3 886,786 - +0.2 886,830 - DDA3937_RS03965 0.16 -1.5 886,868 + DDA3937_RS03965 0.27 +0.5 886,868 + DDA3937_RS03965 0.27 -1.6 886,868 + DDA3937_RS03965 0.27 -1.3 886,869 - DDA3937_RS03965 0.27 -1.1 886,874 + DDA3937_RS03965 0.28 -0.4 886,875 - DDA3937_RS03965 0.29 -0.3 887,067 + DDA3937_RS03965 0.83 -0.7 887,067 + DDA3937_RS03965 0.83 -0.2 887,068 - DDA3937_RS03965 0.84 -0.9 887,098 + -1.4 887,185 - +0.2 887,227 + -0.4 887,227 + -1.3 887,227 + +1.6 887,227 + -0.4 887,227 + -1.3 887,227 + -0.5 887,227 + +0.1 887,227 + +0.1 887,228 - +0.2 887,228 - +0.5 887,228 - -1.5 887,228 - -0.7 887,291 + -0.1 887,391 + -0.2 887,391 + -0.3 887,391 + +1.1 887,391 + +0.5 887,391 + -0.2 887,391 + +0.5 887,391 + -0.3 887,391 + -0.1 887,391 + +0.1 887,391 + -0.8 887,391 + -2.1 887,394 + -0.7 887,394 + +0.8 887,394 + -1.5 887,394 + +0.7 887,395 - -0.7 887,395 - +1.1 887,395 - +1.1 887,395 - -1.3 887,395 - +0.5 887,450 + +0.0 887,450 + -0.1 887,450 + -2.5 887,450 + +0.6 887,470 + -1.7 887,483 + +0.6 887,483 + -0.1 887,483 + +0.5 887,483 + -0.0 887,483 + -0.1 887,484 - -0.1 887,484 - +0.6 887,484 - +0.5 887,484 - -0.3 887,487 + -0.5 887,487 + -2.3 887,487 + -0.5 887,488 - -1.1 887,488 - -0.5 887,488 - -0.5 887,488 - -2.1 887,488 - +0.9 887,488 - +0.6 887,499 + -0.1 887,500 - -0.5 887,618 + -0.3 887,618 + +0.5 887,619 - -0.7 887,619 - -0.9 887,641 + -0.8 887,657 + +0.1 887,658 - -1.7 887,658 - +0.3 887,678 + +0.5 887,679 - -0.5 887,679 - -0.5 887,679 - +0.4 887,679 - -0.5 887,710 - -0.1 887,714 + -1.1 887,714 + +0.5 887,718 + -0.0 887,718 + -0.4 887,718 + -0.0 887,718 + +0.0 887,719 - +0.3 887,741 - -0.5 887,825 + DDA3937_RS03970 0.21 -0.5 887,826 - DDA3937_RS03970 0.21 +0.1 887,864 + DDA3937_RS03970 0.32 +0.1 887,865 - DDA3937_RS03970 0.32 -0.5 887,870 + DDA3937_RS03970 0.34 +0.2 887,870 + DDA3937_RS03970 0.34 -0.6 887,870 + DDA3937_RS03970 0.34 +0.1 887,871 - DDA3937_RS03970 0.34 +0.1 887,871 - DDA3937_RS03970 0.34 +0.4 887,871 - DDA3937_RS03970 0.34 -1.0 887,871 - DDA3937_RS03970 0.34 -0.5 887,871 - DDA3937_RS03970 0.34 +1.3 887,871 - DDA3937_RS03970 0.34 -0.1 887,946 - DDA3937_RS03970 0.56 +0.6 888,013 + DDA3937_RS03970 0.76 -1.9 888,013 + DDA3937_RS03970 0.76 -0.2 888,030 + DDA3937_RS03970 0.81 -0.1 888,031 - DDA3937_RS03970 0.81 +0.5 888,076 + +0.5 888,076 + -0.2 888,077 - +0.1 888,094 + -0.4 888,094 + -0.4 888,094 + +0.8 888,094 + -0.1 888,094 + -0.7 888,094 + -1.2 888,094 + -1.0 888,095 - +0.4 888,095 - +0.2 888,095 - -0.6 888,095 - -0.8 888,095 - -0.9
Or see this region's nucleotide sequence