Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21885 and DDA3937_RS03945 are separated by 100 nucleotides DDA3937_RS03945 and DDA3937_RS03950 overlap by 1 nucleotides
DDA3937_RS21885: DDA3937_RS21885 - hypothetical protein, at 879,640 to 880,596
_RS21885
DDA3937_RS03945: DDA3937_RS03945 - DNA sulfur modification protein DndE, at 880,697 to 881,050
_RS03945
DDA3937_RS03950: DDA3937_RS03950 - DNA sulfur modification protein DndD, at 881,050 to 883,059
_RS03950
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 879.756 kb on - strand, within DDA3937_RS21885 at 879.767 kb on - strand, within DDA3937_RS21885 at 879.787 kb on - strand, within DDA3937_RS21885 at 879.789 kb on + strand, within DDA3937_RS21885 at 879.917 kb on - strand, within DDA3937_RS21885 at 879.975 kb on - strand, within DDA3937_RS21885 at 880.140 kb on + strand, within DDA3937_RS21885 at 880.141 kb on - strand, within DDA3937_RS21885 at 880.154 kb on - strand, within DDA3937_RS21885 at 880.201 kb on - strand, within DDA3937_RS21885 at 880.242 kb on + strand, within DDA3937_RS21885 at 880.243 kb on - strand, within DDA3937_RS21885 at 880.369 kb on - strand, within DDA3937_RS21885 at 880.543 kb on - strand at 880.732 kb on - strand at 880.897 kb on + strand, within DDA3937_RS03945 at 880.897 kb on + strand at 880.897 kb on + strand, within DDA3937_RS03945 at 880.898 kb on - strand, within DDA3937_RS03945 at 880.985 kb on - strand, within DDA3937_RS03945 at 880.987 kb on - strand, within DDA3937_RS03945 at 880.994 kb on + strand, within DDA3937_RS03945 at 881.002 kb on + strand, within DDA3937_RS03945 at 881.002 kb on + strand, within DDA3937_RS03945 at 881.027 kb on - strand at 881.065 kb on - strand at 881.069 kb on - strand at 881.098 kb on - strand at 881.143 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.145 kb on + strand at 881.146 kb on - strand at 881.146 kb on - strand at 881.171 kb on + strand at 881.183 kb on - strand at 881.183 kb on - strand at 881.234 kb on + strand at 881.250 kb on + strand at 881.351 kb on + strand, within DDA3937_RS03950 at 881.389 kb on - strand, within DDA3937_RS03950 at 881.441 kb on - strand at 881.459 kb on - strand, within DDA3937_RS03950 at 881.502 kb on + strand, within DDA3937_RS03950 at 881.549 kb on + strand, within DDA3937_RS03950 at 881.550 kb on - strand, within DDA3937_RS03950 at 881.584 kb on - strand, within DDA3937_RS03950 at 881.596 kb on - strand, within DDA3937_RS03950 at 881.596 kb on - strand at 881.636 kb on - strand, within DDA3937_RS03950 at 881.725 kb on - strand, within DDA3937_RS03950 at 881.791 kb on - strand, within DDA3937_RS03950 at 881.793 kb on + strand, within DDA3937_RS03950 at 881.793 kb on + strand, within DDA3937_RS03950 at 881.794 kb on - strand, within DDA3937_RS03950 at 881.794 kb on - strand, within DDA3937_RS03950 at 881.794 kb on - strand, within DDA3937_RS03950 at 881.843 kb on + strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.844 kb on - strand, within DDA3937_RS03950 at 881.902 kb on - strand, within DDA3937_RS03950 at 881.920 kb on + strand, within DDA3937_RS03950 at 881.922 kb on + strand, within DDA3937_RS03950 at 881.950 kb on - strand, within DDA3937_RS03950 at 881.957 kb on - strand, within DDA3937_RS03950 at 881.958 kb on + strand, within DDA3937_RS03950 at 881.959 kb on - strand, within DDA3937_RS03950 at 881.959 kb on - strand, within DDA3937_RS03950 at 881.960 kb on + strand, within DDA3937_RS03950 at 881.960 kb on + strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 881.961 kb on - strand, within DDA3937_RS03950 at 882.006 kb on + strand, within DDA3937_RS03950 at 882.007 kb on - strand, within DDA3937_RS03950 at 882.010 kb on - strand, within DDA3937_RS03950 at 882.010 kb on - strand, within DDA3937_RS03950 at 882.018 kb on + strand, within DDA3937_RS03950 at 882.033 kb on + strand, within DDA3937_RS03950 at 882.033 kb on + strand, within DDA3937_RS03950 at 882.034 kb on - strand, within DDA3937_RS03950
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 879,756 - DDA3937_RS21885 0.12 -0.1 879,767 - DDA3937_RS21885 0.13 +1.5 879,787 - DDA3937_RS21885 0.15 -1.0 879,789 + DDA3937_RS21885 0.16 -0.3 879,917 - DDA3937_RS21885 0.29 +0.1 879,975 - DDA3937_RS21885 0.35 +0.9 880,140 + DDA3937_RS21885 0.52 +1.3 880,141 - DDA3937_RS21885 0.52 +0.2 880,154 - DDA3937_RS21885 0.54 -0.4 880,201 - DDA3937_RS21885 0.59 +0.9 880,242 + DDA3937_RS21885 0.63 -0.3 880,243 - DDA3937_RS21885 0.63 -0.9 880,369 - DDA3937_RS21885 0.76 -3.0 880,543 - -0.3 880,732 - -1.0 880,897 + DDA3937_RS03945 0.56 +0.9 880,897 + +1.1 880,897 + DDA3937_RS03945 0.56 +0.4 880,898 - DDA3937_RS03945 0.57 -0.5 880,985 - DDA3937_RS03945 0.81 +0.4 880,987 - DDA3937_RS03945 0.82 -0.5 880,994 + DDA3937_RS03945 0.84 -0.4 881,002 + DDA3937_RS03945 0.86 +0.1 881,002 + DDA3937_RS03945 0.86 +1.7 881,027 - -0.3 881,065 - +0.9 881,069 - -1.0 881,098 - -0.3 881,143 + +0.4 881,145 + +0.3 881,145 + -1.1 881,145 + -0.9 881,145 + -0.5 881,145 + +0.0 881,146 - -0.5 881,146 - +1.4 881,171 + -1.3 881,183 - -0.9 881,183 - -0.2 881,234 + -0.4 881,250 + +0.1 881,351 + DDA3937_RS03950 0.15 +0.8 881,389 - DDA3937_RS03950 0.17 +0.1 881,441 - +1.5 881,459 - DDA3937_RS03950 0.20 -1.3 881,502 + DDA3937_RS03950 0.22 -1.2 881,549 + DDA3937_RS03950 0.25 -0.2 881,550 - DDA3937_RS03950 0.25 +2.7 881,584 - DDA3937_RS03950 0.27 -0.7 881,596 - DDA3937_RS03950 0.27 -0.5 881,596 - +1.1 881,636 - DDA3937_RS03950 0.29 -0.1 881,725 - DDA3937_RS03950 0.34 +1.1 881,791 - DDA3937_RS03950 0.37 -0.1 881,793 + DDA3937_RS03950 0.37 -0.3 881,793 + DDA3937_RS03950 0.37 +0.6 881,794 - DDA3937_RS03950 0.37 -0.2 881,794 - DDA3937_RS03950 0.37 -0.8 881,794 - DDA3937_RS03950 0.37 -2.3 881,843 + DDA3937_RS03950 0.39 -0.5 881,844 - DDA3937_RS03950 0.40 +3.1 881,844 - DDA3937_RS03950 0.40 -0.1 881,844 - DDA3937_RS03950 0.40 -1.6 881,844 - DDA3937_RS03950 0.40 +0.1 881,902 - DDA3937_RS03950 0.42 +0.4 881,920 + DDA3937_RS03950 0.43 -1.6 881,922 + DDA3937_RS03950 0.43 -1.1 881,950 - DDA3937_RS03950 0.45 -0.8 881,957 - DDA3937_RS03950 0.45 -0.5 881,958 + DDA3937_RS03950 0.45 -1.7 881,959 - DDA3937_RS03950 0.45 +0.7 881,959 - DDA3937_RS03950 0.45 -0.5 881,960 + DDA3937_RS03950 0.45 -0.6 881,960 + DDA3937_RS03950 0.45 -1.7 881,961 - DDA3937_RS03950 0.45 -1.7 881,961 - DDA3937_RS03950 0.45 -0.8 881,961 - DDA3937_RS03950 0.45 -1.3 881,961 - DDA3937_RS03950 0.45 +0.6 881,961 - DDA3937_RS03950 0.45 -0.4 881,961 - DDA3937_RS03950 0.45 -2.3 881,961 - DDA3937_RS03950 0.45 +0.4 881,961 - DDA3937_RS03950 0.45 -0.7 881,961 - DDA3937_RS03950 0.45 -0.4 882,006 + DDA3937_RS03950 0.48 +0.1 882,007 - DDA3937_RS03950 0.48 -0.3 882,010 - DDA3937_RS03950 0.48 +0.5 882,010 - DDA3937_RS03950 0.48 +1.1 882,018 + DDA3937_RS03950 0.48 -1.0 882,033 + DDA3937_RS03950 0.49 +0.5 882,033 + DDA3937_RS03950 0.49 -2.5 882,034 - DDA3937_RS03950 0.49 -0.5
Or see this region's nucleotide sequence