Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03580 and DDA3937_RS03585 are separated by 149 nucleotides DDA3937_RS03585 and DDA3937_RS03590 are separated by 24 nucleotides DDA3937_RS03590 and DDA3937_RS03595 are separated by 96 nucleotides
DDA3937_RS03580: DDA3937_RS03580 - hypothetical protein, at 791,741 to 792,163
_RS03580
DDA3937_RS03585: DDA3937_RS03585 - GNAT family N-acetyltransferase, at 792,313 to 792,858
_RS03585
DDA3937_RS03590: DDA3937_RS03590 - LysE family transporter, at 792,883 to 793,506
_RS03590
DDA3937_RS03595: DDA3937_RS03595 - YnfC family lipoprotein, at 793,603 to 794,328
_RS03595
Position (kb) 792
793 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 791.333 kb on + strand at 791.333 kb on + strand at 791.333 kb on + strand at 791.333 kb on + strand at 791.334 kb on - strand at 791.336 kb on + strand at 791.337 kb on - strand at 791.345 kb on - strand at 791.422 kb on + strand at 791.423 kb on - strand at 791.437 kb on - strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.454 kb on + strand at 791.455 kb on - strand at 791.455 kb on - strand at 791.455 kb on - strand at 791.461 kb on - strand at 791.463 kb on + strand at 791.464 kb on - strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.474 kb on + strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.475 kb on - strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.476 kb on + strand at 791.477 kb on - strand at 791.477 kb on - strand at 791.477 kb on - strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.483 kb on + strand at 791.484 kb on - strand at 791.484 kb on - strand at 791.484 kb on - strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.486 kb on + strand at 791.487 kb on - strand at 791.491 kb on + strand at 791.491 kb on + strand at 791.492 kb on - strand at 791.584 kb on - strand at 791.584 kb on - strand at 791.584 kb on - strand at 791.678 kb on + strand at 791.678 kb on + strand at 791.678 kb on + strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.679 kb on - strand at 791.689 kb on + strand at 791.690 kb on - strand at 791.690 kb on - strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.740 kb on + strand at 791.741 kb on - strand at 791.741 kb on - strand at 791.775 kb on + strand at 791.776 kb on - strand at 791.801 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.827 kb on + strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.828 kb on - strand, within DDA3937_RS03580 at 791.852 kb on + strand, within DDA3937_RS03580 at 791.854 kb on + strand, within DDA3937_RS03580 at 791.854 kb on + strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.855 kb on - strand, within DDA3937_RS03580 at 791.872 kb on - strand, within DDA3937_RS03580 at 791.914 kb on + strand, within DDA3937_RS03580 at 791.914 kb on + strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.915 kb on - strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 791.918 kb on + strand, within DDA3937_RS03580 at 792.046 kb on - strand, within DDA3937_RS03580 at 792.107 kb on + strand, within DDA3937_RS03580 at 792.107 kb on + strand, within DDA3937_RS03580 at 792.108 kb on - strand, within DDA3937_RS03580 at 792.116 kb on + strand, within DDA3937_RS03580 at 792.116 kb on + strand, within DDA3937_RS03580 at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.155 kb on + strand at 792.156 kb on - strand at 792.156 kb on - strand at 792.197 kb on + strand at 792.197 kb on + strand at 792.198 kb on - strand at 792.278 kb on + strand at 792.278 kb on + strand at 792.324 kb on + strand at 792.324 kb on + strand at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.400 kb on - strand, within DDA3937_RS03585 at 792.483 kb on - strand, within DDA3937_RS03585 at 792.517 kb on + strand, within DDA3937_RS03585 at 792.517 kb on + strand, within DDA3937_RS03585 at 792.676 kb on - strand at 792.688 kb on - strand, within DDA3937_RS03585 at 792.701 kb on - strand, within DDA3937_RS03585 at 792.823 kb on + strand at 792.823 kb on + strand at 792.823 kb on + strand at 792.824 kb on - strand at 792.824 kb on - strand at 792.840 kb on + strand at 792.840 kb on + strand at 792.841 kb on - strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.854 kb on + strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.855 kb on - strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.856 kb on + strand at 792.857 kb on - strand at 792.857 kb on - strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.884 kb on + strand at 792.965 kb on + strand, within DDA3937_RS03590 at 792.965 kb on + strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 792.966 kb on - strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.058 kb on + strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.059 kb on - strand, within DDA3937_RS03590 at 793.099 kb on + strand, within DDA3937_RS03590 at 793.100 kb on - strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.247 kb on + strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.248 kb on - strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.249 kb on + strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.250 kb on - strand, within DDA3937_RS03590 at 793.256 kb on + strand, within DDA3937_RS03590 at 793.256 kb on + strand, within DDA3937_RS03590 at 793.257 kb on - strand, within DDA3937_RS03590 at 793.257 kb on - strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.386 kb on + strand, within DDA3937_RS03590 at 793.387 kb on - strand, within DDA3937_RS03590 at 793.414 kb on - strand, within DDA3937_RS03590 at 793.486 kb on - strand at 793.492 kb on + strand at 793.492 kb on + strand at 793.493 kb on - strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.535 kb on + strand at 793.536 kb on - strand at 793.541 kb on + strand at 793.603 kb on - strand at 793.603 kb on - strand at 793.603 kb on - strand at 793.611 kb on - strand at 793.637 kb on + strand at 793.637 kb on + strand at 793.637 kb on + strand at 793.640 kb on + strand at 793.640 kb on + strand at 793.641 kb on - strand at 793.750 kb on - strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.789 kb on + strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.790 kb on - strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.840 kb on + strand, within DDA3937_RS03595 at 793.841 kb on - strand, within DDA3937_RS03595 at 793.841 kb on - strand, within DDA3937_RS03595
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 791,333 + +0.8 791,333 + +0.8 791,333 + +0.5 791,333 + -0.3 791,334 - -0.0 791,336 + -0.0 791,337 - +0.7 791,345 - -0.5 791,422 + +0.1 791,423 - +0.7 791,437 - -0.2 791,454 + +0.4 791,454 + -0.2 791,454 + -0.1 791,454 + +1.1 791,455 - -0.9 791,455 - +0.5 791,455 - -0.3 791,461 - +0.1 791,463 + +1.4 791,464 - -0.7 791,474 + +0.4 791,474 + -0.2 791,474 + +0.4 791,474 + -1.5 791,474 + -1.2 791,474 + -0.4 791,474 + -0.1 791,475 - +1.3 791,475 - -0.5 791,475 - -0.5 791,475 - -0.7 791,475 - -0.1 791,476 + +0.3 791,476 + +0.5 791,476 + +0.1 791,476 + +2.1 791,476 + +0.2 791,477 - +0.1 791,477 - -2.7 791,477 - -0.6 791,483 + +0.1 791,483 + -0.5 791,483 + -1.4 791,483 + +0.3 791,483 + +0.1 791,483 + +0.3 791,483 + +0.1 791,484 - -0.4 791,484 - -1.4 791,484 - +1.1 791,486 + -0.2 791,486 + +0.7 791,486 + +0.4 791,486 + +0.1 791,487 - +0.1 791,491 + -1.3 791,491 + +0.5 791,492 - -0.9 791,584 - +1.8 791,584 - +0.1 791,584 - -0.2 791,678 + -0.1 791,678 + -0.3 791,678 + -0.9 791,679 - +0.3 791,679 - +0.4 791,679 - -1.0 791,679 - +2.4 791,689 + -0.9 791,690 - +0.4 791,690 - +0.9 791,740 + +0.4 791,740 + +0.2 791,740 + +1.0 791,740 + -0.2 791,740 + +0.2 791,740 + -0.4 791,740 + +0.5 791,741 - +0.9 791,741 - +0.3 791,775 + +0.1 791,776 - +0.6 791,801 + DDA3937_RS03580 0.14 -0.1 791,827 + DDA3937_RS03580 0.20 +0.1 791,827 + DDA3937_RS03580 0.20 -0.4 791,827 + DDA3937_RS03580 0.20 -0.3 791,827 + DDA3937_RS03580 0.20 -0.5 791,827 + DDA3937_RS03580 0.20 +0.4 791,828 - DDA3937_RS03580 0.21 -0.8 791,828 - DDA3937_RS03580 0.21 -1.4 791,828 - DDA3937_RS03580 0.21 -1.2 791,828 - DDA3937_RS03580 0.21 -0.5 791,852 + DDA3937_RS03580 0.26 -0.4 791,854 + DDA3937_RS03580 0.27 -0.1 791,854 + DDA3937_RS03580 0.27 -0.5 791,855 - DDA3937_RS03580 0.27 +0.8 791,855 - DDA3937_RS03580 0.27 +0.5 791,855 - DDA3937_RS03580 0.27 +0.1 791,855 - DDA3937_RS03580 0.27 -0.9 791,855 - DDA3937_RS03580 0.27 +0.5 791,872 - DDA3937_RS03580 0.31 -0.8 791,914 + DDA3937_RS03580 0.41 +0.0 791,914 + DDA3937_RS03580 0.41 -0.1 791,915 - DDA3937_RS03580 0.41 -1.2 791,915 - DDA3937_RS03580 0.41 +1.2 791,915 - DDA3937_RS03580 0.41 -0.3 791,915 - DDA3937_RS03580 0.41 -0.2 791,918 + DDA3937_RS03580 0.42 +0.5 791,918 + DDA3937_RS03580 0.42 -0.9 791,918 + DDA3937_RS03580 0.42 +0.0 791,918 + DDA3937_RS03580 0.42 -1.2 792,046 - DDA3937_RS03580 0.72 -0.8 792,107 + DDA3937_RS03580 0.87 -0.4 792,107 + DDA3937_RS03580 0.87 -0.4 792,108 - DDA3937_RS03580 0.87 -0.7 792,116 + DDA3937_RS03580 0.89 +0.5 792,116 + DDA3937_RS03580 0.89 -0.4 792,155 + +0.1 792,155 + -1.2 792,155 + -1.1 792,155 + -1.1 792,155 + -1.7 792,155 + +0.3 792,156 - -0.1 792,156 - +0.6 792,197 + -2.4 792,197 + -0.9 792,198 - -2.5 792,278 + -1.2 792,278 + -0.9 792,324 + +1.3 792,324 + -0.6 792,400 - DDA3937_RS03585 0.16 +0.2 792,400 - DDA3937_RS03585 0.16 +0.7 792,400 - DDA3937_RS03585 0.16 +0.2 792,400 - DDA3937_RS03585 0.16 +0.8 792,400 - DDA3937_RS03585 0.16 +0.7 792,400 - DDA3937_RS03585 0.16 -1.0 792,400 - DDA3937_RS03585 0.16 +0.9 792,400 - DDA3937_RS03585 0.16 +0.4 792,400 - DDA3937_RS03585 0.16 +0.4 792,400 - DDA3937_RS03585 0.16 +0.3 792,483 - DDA3937_RS03585 0.31 -0.6 792,517 + DDA3937_RS03585 0.37 +0.4 792,517 + DDA3937_RS03585 0.37 -0.8 792,676 - +2.1 792,688 - DDA3937_RS03585 0.69 -0.9 792,701 - DDA3937_RS03585 0.71 +2.1 792,823 + -0.0 792,823 + +1.1 792,823 + -0.1 792,824 - +1.1 792,824 - -0.6 792,840 + -0.2 792,840 + +0.5 792,841 - +0.4 792,854 + -1.2 792,854 + -0.9 792,854 + -0.3 792,854 + +0.1 792,854 + +0.5 792,854 + -0.7 792,854 + +1.1 792,855 - +0.3 792,855 - -0.0 792,855 - -1.5 792,855 - +4.0 792,855 - -1.2 792,856 + -0.5 792,856 + -0.5 792,856 + -1.2 792,857 - +0.4 792,857 - +0.5 792,884 + +0.2 792,884 + +1.1 792,884 + +0.3 792,965 + DDA3937_RS03590 0.13 -1.1 792,965 + DDA3937_RS03590 0.13 -2.7 792,966 - DDA3937_RS03590 0.13 +0.0 792,966 - DDA3937_RS03590 0.13 +0.1 793,058 + DDA3937_RS03590 0.28 -0.3 793,058 + DDA3937_RS03590 0.28 +0.0 793,058 + DDA3937_RS03590 0.28 +0.3 793,059 - DDA3937_RS03590 0.28 +0.1 793,059 - DDA3937_RS03590 0.28 -0.6 793,099 + DDA3937_RS03590 0.35 +0.1 793,100 - DDA3937_RS03590 0.35 -1.1 793,247 + DDA3937_RS03590 0.58 -0.7 793,247 + DDA3937_RS03590 0.58 -0.7 793,247 + DDA3937_RS03590 0.58 -0.1 793,247 + DDA3937_RS03590 0.58 +0.3 793,247 + DDA3937_RS03590 0.58 +0.1 793,248 - DDA3937_RS03590 0.58 -2.1 793,248 - DDA3937_RS03590 0.58 -0.7 793,248 - DDA3937_RS03590 0.58 -0.1 793,248 - DDA3937_RS03590 0.58 +0.5 793,249 + DDA3937_RS03590 0.59 +0.5 793,249 + DDA3937_RS03590 0.59 +0.0 793,249 + DDA3937_RS03590 0.59 -0.3 793,250 - DDA3937_RS03590 0.59 -1.5 793,250 - DDA3937_RS03590 0.59 +1.8 793,250 - DDA3937_RS03590 0.59 +0.3 793,250 - DDA3937_RS03590 0.59 +0.7 793,256 + DDA3937_RS03590 0.60 -0.2 793,256 + DDA3937_RS03590 0.60 +0.0 793,257 - DDA3937_RS03590 0.60 -0.5 793,257 - DDA3937_RS03590 0.60 -1.3 793,386 + DDA3937_RS03590 0.81 -1.1 793,386 + DDA3937_RS03590 0.81 -0.5 793,386 + DDA3937_RS03590 0.81 -0.1 793,386 + DDA3937_RS03590 0.81 +0.8 793,386 + DDA3937_RS03590 0.81 -1.5 793,387 - DDA3937_RS03590 0.81 +0.2 793,414 - DDA3937_RS03590 0.85 -0.2 793,486 - -0.1 793,492 + +1.5 793,492 + -0.7 793,493 - +1.6 793,535 + +0.1 793,535 + -0.6 793,535 + +0.6 793,535 + +0.7 793,535 + +0.1 793,535 + -0.4 793,536 - +0.4 793,541 + +0.1 793,603 - -0.7 793,603 - +0.1 793,603 - -0.2 793,611 - -1.3 793,637 + +0.6 793,637 + -0.2 793,637 + -0.3 793,640 + -0.6 793,640 + +0.6 793,641 - -0.1 793,750 - DDA3937_RS03595 0.20 +0.6 793,789 + DDA3937_RS03595 0.26 -0.5 793,789 + DDA3937_RS03595 0.26 -0.1 793,789 + DDA3937_RS03595 0.26 +1.4 793,790 - DDA3937_RS03595 0.26 +0.2 793,790 - DDA3937_RS03595 0.26 -0.0 793,790 - DDA3937_RS03595 0.26 -0.3 793,840 + DDA3937_RS03595 0.33 -0.3 793,840 + DDA3937_RS03595 0.33 -0.8 793,840 + DDA3937_RS03595 0.33 -0.4 793,840 + DDA3937_RS03595 0.33 -0.7 793,841 - DDA3937_RS03595 0.33 -0.3 793,841 - DDA3937_RS03595 0.33 -0.9
Or see this region's nucleotide sequence