Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03365 and DDA3937_RS03370 are separated by 94 nucleotides DDA3937_RS03370 and DDA3937_RS03375 are separated by 387 nucleotides
DDA3937_RS03365: DDA3937_RS03365 - IS3 family transposase, at 733,923 to 735,022
_RS03365
DDA3937_RS03370: DDA3937_RS03370 - RelA/SpoT domain-containing protein, at 735,117 to 736,229
_RS03370
DDA3937_RS03375: DDA3937_RS03375 - efflux RND transporter periplasmic adaptor subunit, at 736,617 to 737,744
_RS03375
Position (kb) 735
736
737 Strain fitness (log2 ratio) -2
-1
0
1
2 at 734.240 kb on - strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.288 kb on + strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.289 kb on - strand, within DDA3937_RS03365 at 734.343 kb on + strand, within DDA3937_RS03365 at 734.363 kb on + strand, within DDA3937_RS03365 at 734.392 kb on - strand, within DDA3937_RS03365 at 734.438 kb on + strand, within DDA3937_RS03365 at 734.439 kb on - strand, within DDA3937_RS03365 at 734.601 kb on + strand, within DDA3937_RS03365 at 734.602 kb on - strand, within DDA3937_RS03365 at 734.609 kb on - strand, within DDA3937_RS03365 at 734.676 kb on + strand, within DDA3937_RS03365 at 734.677 kb on - strand at 734.677 kb on - strand, within DDA3937_RS03365 at 734.719 kb on + strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.720 kb on - strand, within DDA3937_RS03365 at 734.746 kb on + strand, within DDA3937_RS03365 at 734.775 kb on - strand, within DDA3937_RS03365 at 734.833 kb on + strand, within DDA3937_RS03365 at 734.833 kb on + strand, within DDA3937_RS03365 at 734.845 kb on + strand, within DDA3937_RS03365 at 734.846 kb on - strand, within DDA3937_RS03365 at 734.889 kb on + strand, within DDA3937_RS03365 at 734.936 kb on + strand at 734.936 kb on + strand at 734.938 kb on + strand at 734.939 kb on - strand at 734.939 kb on - strand at 734.939 kb on - strand at 734.964 kb on + strand at 734.965 kb on - strand at 735.026 kb on - strand at 735.097 kb on + strand at 735.097 kb on + strand at 735.101 kb on + strand at 735.116 kb on - strand at 735.148 kb on - strand at 735.194 kb on - strand at 735.238 kb on - strand, within DDA3937_RS03370 at 735.253 kb on - strand, within DDA3937_RS03370 at 735.256 kb on - strand, within DDA3937_RS03370 at 735.345 kb on - strand, within DDA3937_RS03370 at 735.416 kb on + strand, within DDA3937_RS03370 at 735.426 kb on - strand, within DDA3937_RS03370 at 735.428 kb on + strand, within DDA3937_RS03370 at 735.429 kb on - strand, within DDA3937_RS03370 at 735.457 kb on - strand, within DDA3937_RS03370 at 735.461 kb on + strand, within DDA3937_RS03370 at 735.469 kb on - strand, within DDA3937_RS03370 at 735.474 kb on + strand, within DDA3937_RS03370 at 735.475 kb on - strand, within DDA3937_RS03370 at 735.486 kb on + strand, within DDA3937_RS03370 at 735.496 kb on - strand, within DDA3937_RS03370 at 735.496 kb on - strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.534 kb on + strand, within DDA3937_RS03370 at 735.535 kb on - strand, within DDA3937_RS03370 at 735.559 kb on - strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.561 kb on + strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.562 kb on - strand, within DDA3937_RS03370 at 735.574 kb on - strand at 735.582 kb on + strand, within DDA3937_RS03370 at 735.641 kb on + strand, within DDA3937_RS03370 at 735.753 kb on - strand, within DDA3937_RS03370 at 735.754 kb on + strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.755 kb on - strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.825 kb on + strand, within DDA3937_RS03370 at 735.856 kb on - strand, within DDA3937_RS03370 at 735.858 kb on + strand, within DDA3937_RS03370 at 735.859 kb on - strand, within DDA3937_RS03370 at 736.172 kb on + strand at 736.173 kb on - strand at 736.191 kb on + strand at 736.196 kb on + strand at 736.224 kb on - strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.244 kb on + strand at 736.245 kb on - strand at 736.245 kb on - strand at 736.249 kb on + strand at 736.249 kb on + strand at 736.268 kb on + strand at 736.268 kb on + strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.269 kb on - strand at 736.270 kb on + strand at 736.271 kb on - strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.276 kb on + strand at 736.277 kb on - strand at 736.278 kb on + strand at 736.278 kb on + strand at 736.279 kb on - strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.282 kb on + strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.283 kb on - strand at 736.326 kb on + strand at 736.327 kb on - strand at 736.327 kb on - strand at 736.354 kb on + strand at 736.376 kb on - strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.404 kb on + strand at 736.405 kb on - strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.416 kb on + strand at 736.417 kb on - strand at 736.417 kb on - strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.418 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.423 kb on - strand at 736.444 kb on - strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.454 kb on + strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.455 kb on - strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.458 kb on + strand at 736.459 kb on - strand at 736.459 kb on - strand at 736.473 kb on + strand at 736.474 kb on - strand at 736.517 kb on + strand at 736.517 kb on + strand at 736.518 kb on - strand at 736.581 kb on + strand at 736.582 kb on - strand at 736.625 kb on - strand at 736.680 kb on + strand at 736.690 kb on - strand at 736.690 kb on - strand at 736.827 kb on - strand, within DDA3937_RS03375 at 736.868 kb on + strand, within DDA3937_RS03375 at 736.985 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand at 737.034 kb on + strand, within DDA3937_RS03375 at 737.034 kb on + strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.035 kb on - strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.036 kb on + strand, within DDA3937_RS03375 at 737.082 kb on + strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.083 kb on - strand, within DDA3937_RS03375 at 737.096 kb on + strand, within DDA3937_RS03375 at 737.097 kb on - strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.144 kb on + strand, within DDA3937_RS03375 at 737.155 kb on - strand, within DDA3937_RS03375
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 734,240 - DDA3937_RS03365 0.29 -0.6 734,288 + DDA3937_RS03365 0.33 -1.2 734,288 + DDA3937_RS03365 0.33 -0.8 734,289 - DDA3937_RS03365 0.33 -0.1 734,289 - DDA3937_RS03365 0.33 -1.3 734,343 + DDA3937_RS03365 0.38 +0.1 734,363 + DDA3937_RS03365 0.40 +0.3 734,392 - DDA3937_RS03365 0.43 +0.2 734,438 + DDA3937_RS03365 0.47 +0.4 734,439 - DDA3937_RS03365 0.47 +0.1 734,601 + DDA3937_RS03365 0.62 +0.1 734,602 - DDA3937_RS03365 0.62 +0.3 734,609 - DDA3937_RS03365 0.62 -1.1 734,676 + DDA3937_RS03365 0.68 +1.1 734,677 - +2.3 734,677 - DDA3937_RS03365 0.69 -0.2 734,719 + DDA3937_RS03365 0.72 +0.1 734,720 - DDA3937_RS03365 0.72 -2.2 734,720 - DDA3937_RS03365 0.72 -0.7 734,746 + DDA3937_RS03365 0.75 +1.7 734,775 - DDA3937_RS03365 0.77 -1.9 734,833 + DDA3937_RS03365 0.83 +0.0 734,833 + DDA3937_RS03365 0.83 +0.0 734,845 + DDA3937_RS03365 0.84 -0.1 734,846 - DDA3937_RS03365 0.84 -0.5 734,889 + DDA3937_RS03365 0.88 -2.1 734,936 + -1.1 734,936 + +0.1 734,938 + -0.6 734,939 - -0.5 734,939 - +1.9 734,939 - -1.7 734,964 + +0.9 734,965 - -0.5 735,026 - -0.5 735,097 + -1.7 735,097 + -0.6 735,101 + +0.3 735,116 - -1.0 735,148 - -0.3 735,194 - -0.2 735,238 - DDA3937_RS03370 0.11 -1.2 735,253 - DDA3937_RS03370 0.12 +0.1 735,256 - DDA3937_RS03370 0.12 -0.1 735,345 - DDA3937_RS03370 0.20 -1.5 735,416 + DDA3937_RS03370 0.27 +0.1 735,426 - DDA3937_RS03370 0.28 +0.6 735,428 + DDA3937_RS03370 0.28 -0.9 735,429 - DDA3937_RS03370 0.28 -0.9 735,457 - DDA3937_RS03370 0.31 -0.7 735,461 + DDA3937_RS03370 0.31 -1.4 735,469 - DDA3937_RS03370 0.32 -1.3 735,474 + DDA3937_RS03370 0.32 -0.7 735,475 - DDA3937_RS03370 0.32 +0.8 735,486 + DDA3937_RS03370 0.33 -0.8 735,496 - DDA3937_RS03370 0.34 +0.6 735,496 - DDA3937_RS03370 0.34 -0.3 735,534 + DDA3937_RS03370 0.37 -0.1 735,534 + DDA3937_RS03370 0.37 +1.4 735,534 + DDA3937_RS03370 0.37 -0.4 735,535 - DDA3937_RS03370 0.38 -0.1 735,559 - DDA3937_RS03370 0.40 -0.5 735,561 + DDA3937_RS03370 0.40 -0.4 735,561 + DDA3937_RS03370 0.40 -0.5 735,561 + DDA3937_RS03370 0.40 +0.1 735,562 - DDA3937_RS03370 0.40 +0.8 735,562 - DDA3937_RS03370 0.40 -0.9 735,562 - DDA3937_RS03370 0.40 -0.6 735,574 - +2.5 735,582 + DDA3937_RS03370 0.42 -0.6 735,641 + DDA3937_RS03370 0.47 -0.7 735,753 - DDA3937_RS03370 0.57 -1.5 735,754 + DDA3937_RS03370 0.57 -0.0 735,755 - DDA3937_RS03370 0.57 +0.3 735,755 - DDA3937_RS03370 0.57 -0.7 735,755 - DDA3937_RS03370 0.57 +1.1 735,755 - DDA3937_RS03370 0.57 +0.1 735,825 + DDA3937_RS03370 0.64 -0.2 735,825 + DDA3937_RS03370 0.64 -0.8 735,856 - DDA3937_RS03370 0.66 +1.3 735,858 + DDA3937_RS03370 0.67 +0.3 735,859 - DDA3937_RS03370 0.67 +1.4 736,172 + -0.9 736,173 - +0.3 736,191 + -0.2 736,196 + -0.3 736,224 - -0.5 736,244 + -1.2 736,244 + -0.3 736,244 + -0.2 736,245 - +0.7 736,245 - +0.5 736,249 + -0.4 736,249 + +0.1 736,268 + +0.5 736,268 + +0.0 736,269 - -0.3 736,269 - +0.1 736,269 - -0.0 736,269 - +0.8 736,269 - -0.5 736,270 + -2.0 736,271 - +0.1 736,276 + +1.1 736,276 + +2.1 736,276 + -0.5 736,276 + +0.5 736,277 - -0.0 736,278 + -0.7 736,278 + -0.2 736,279 - +0.1 736,282 + -2.2 736,282 + -0.2 736,282 + -0.3 736,282 + +0.2 736,283 - -2.1 736,283 - -0.4 736,283 - +0.3 736,326 + -2.3 736,327 - -0.8 736,327 - -1.1 736,354 + +0.2 736,376 - +0.4 736,404 + -0.2 736,404 + -0.1 736,404 + -0.6 736,405 - -0.9 736,416 + -0.9 736,416 + +1.1 736,416 + +0.2 736,417 - -0.3 736,417 - +0.5 736,418 + -2.7 736,418 + -0.0 736,418 + +0.5 736,418 + +0.4 736,418 + -0.1 736,418 + +0.1 736,418 + +0.5 736,419 - -0.0 736,419 - -0.5 736,419 - -0.5 736,419 - +0.6 736,419 - -1.0 736,419 - +1.4 736,423 - +0.2 736,423 - -0.1 736,423 - +0.4 736,423 - -0.0 736,423 - -1.9 736,444 - +0.4 736,454 + -1.5 736,454 + +0.4 736,454 + -0.1 736,454 + +0.1 736,455 - -0.5 736,455 - -0.3 736,455 - +0.4 736,455 - +0.2 736,458 + +0.1 736,458 + +0.3 736,458 + -1.2 736,458 + -1.8 736,458 + -1.7 736,458 + +0.5 736,459 - -0.4 736,459 - -0.0 736,473 + +0.6 736,474 - -0.7 736,517 + -0.2 736,517 + -0.3 736,518 - +0.3 736,581 + +0.4 736,582 - -1.5 736,625 - -0.5 736,680 + -2.2 736,690 - -0.5 736,690 - -0.3 736,827 - DDA3937_RS03375 0.19 -1.0 736,868 + DDA3937_RS03375 0.22 +0.1 736,985 + DDA3937_RS03375 0.33 -2.6 737,034 + -0.5 737,034 + DDA3937_RS03375 0.37 -0.2 737,034 + DDA3937_RS03375 0.37 +0.6 737,035 - DDA3937_RS03375 0.37 +0.8 737,035 - DDA3937_RS03375 0.37 +0.4 737,035 - DDA3937_RS03375 0.37 -0.9 737,035 - DDA3937_RS03375 0.37 +0.1 737,036 + DDA3937_RS03375 0.37 -0.9 737,036 + DDA3937_RS03375 0.37 -0.0 737,082 + DDA3937_RS03375 0.41 -0.1 737,083 - DDA3937_RS03375 0.41 -0.9 737,083 - DDA3937_RS03375 0.41 -1.9 737,096 + DDA3937_RS03375 0.42 +0.1 737,097 - DDA3937_RS03375 0.43 -0.7 737,144 + DDA3937_RS03375 0.47 +0.0 737,144 + DDA3937_RS03375 0.47 -0.2 737,144 + DDA3937_RS03375 0.47 +1.3 737,155 - DDA3937_RS03375 0.48 -0.1
Or see this region's nucleotide sequence