Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03160 and DDA3937_RS03165 are separated by 127 nucleotides DDA3937_RS03165 and DDA3937_RS03170 are separated by 127 nucleotides DDA3937_RS03170 and DDA3937_RS03175 are separated by 60 nucleotides
DDA3937_RS03160: DDA3937_RS03160 - VOC family protein, at 695,914 to 696,468
_RS03160
DDA3937_RS03165: DDA3937_RS03165 - LysR family transcriptional regulator, at 696,596 to 697,513
_RS03165
DDA3937_RS03170: DDA3937_RS03170 - nuclear transport factor 2 family protein, at 697,641 to 698,036
_RS03170
DDA3937_RS03175: DDA3937_RS03175 - antibiotic biosynthesis monooxygenase, at 698,097 to 698,489
_RS03175
Position (kb) 696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 695.663 kb on + strand at 695.663 kb on + strand at 695.663 kb on + strand at 695.663 kb on + strand at 695.718 kb on + strand at 695.718 kb on + strand at 695.719 kb on - strand at 695.719 kb on - strand at 695.788 kb on + strand at 695.788 kb on + strand at 695.798 kb on + strand at 695.875 kb on + strand at 695.876 kb on - strand at 696.051 kb on - strand, within DDA3937_RS03160 at 696.061 kb on + strand, within DDA3937_RS03160 at 696.061 kb on + strand, within DDA3937_RS03160 at 696.062 kb on - strand, within DDA3937_RS03160 at 696.062 kb on - strand, within DDA3937_RS03160 at 696.143 kb on + strand, within DDA3937_RS03160 at 696.143 kb on + strand at 696.421 kb on + strand at 696.518 kb on + strand at 696.518 kb on + strand at 696.518 kb on + strand at 696.536 kb on + strand at 696.537 kb on - strand at 696.821 kb on + strand, within DDA3937_RS03165 at 696.821 kb on + strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.822 kb on - strand, within DDA3937_RS03165 at 696.946 kb on + strand, within DDA3937_RS03165 at 696.947 kb on - strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.032 kb on + strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.033 kb on - strand, within DDA3937_RS03165 at 697.036 kb on + strand, within DDA3937_RS03165 at 697.036 kb on + strand, within DDA3937_RS03165 at 697.037 kb on - strand, within DDA3937_RS03165 at 697.095 kb on - strand, within DDA3937_RS03165 at 697.095 kb on - strand, within DDA3937_RS03165 at 697.116 kb on - strand, within DDA3937_RS03165 at 697.116 kb on - strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.178 kb on + strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.179 kb on - strand, within DDA3937_RS03165 at 697.214 kb on - strand, within DDA3937_RS03165 at 697.241 kb on - strand, within DDA3937_RS03165 at 697.241 kb on - strand, within DDA3937_RS03165 at 697.333 kb on + strand, within DDA3937_RS03165 at 697.333 kb on + strand, within DDA3937_RS03165 at 697.334 kb on - strand, within DDA3937_RS03165 at 697.347 kb on - strand, within DDA3937_RS03165 at 697.424 kb on - strand at 697.443 kb on + strand at 697.444 kb on - strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.455 kb on + strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.456 kb on - strand at 697.458 kb on + strand at 697.478 kb on + strand at 697.478 kb on + strand at 697.479 kb on - strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.580 kb on + strand at 697.581 kb on - strand at 697.581 kb on - strand at 697.581 kb on - strand at 697.671 kb on + strand at 697.672 kb on - strand at 697.672 kb on - strand at 697.672 kb on - strand at 697.694 kb on + strand, within DDA3937_RS03170 at 697.695 kb on - strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.743 kb on + strand, within DDA3937_RS03170 at 697.802 kb on + strand, within DDA3937_RS03170 at 697.814 kb on - strand, within DDA3937_RS03170 at 697.814 kb on - strand, within DDA3937_RS03170 at 697.845 kb on - strand, within DDA3937_RS03170 at 697.845 kb on - strand, within DDA3937_RS03170 at 697.848 kb on - strand, within DDA3937_RS03170 at 697.890 kb on + strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.891 kb on - strand, within DDA3937_RS03170 at 697.929 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.941 kb on + strand, within DDA3937_RS03170 at 697.942 kb on - strand, within DDA3937_RS03170 at 697.942 kb on - strand, within DDA3937_RS03170 at 698.000 kb on + strand at 698.034 kb on + strand at 698.035 kb on - strand at 698.072 kb on + strand at 698.084 kb on - strand at 698.084 kb on - strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.123 kb on + strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.124 kb on - strand at 698.181 kb on + strand, within DDA3937_RS03175 at 698.181 kb on + strand, within DDA3937_RS03175 at 698.182 kb on - strand, within DDA3937_RS03175 at 698.184 kb on + strand, within DDA3937_RS03175 at 698.185 kb on - strand, within DDA3937_RS03175 at 698.346 kb on + strand, within DDA3937_RS03175 at 698.346 kb on + strand, within DDA3937_RS03175 at 698.347 kb on - strand, within DDA3937_RS03175 at 698.347 kb on - strand, within DDA3937_RS03175 at 698.378 kb on - strand, within DDA3937_RS03175 at 698.399 kb on + strand, within DDA3937_RS03175 at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.456 kb on + strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.457 kb on - strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.511 kb on + strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.512 kb on - strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand at 698.513 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 695,663 + +0.5 695,663 + +1.1 695,663 + -1.0 695,663 + -1.5 695,718 + +1.5 695,718 + -0.3 695,719 - -1.1 695,719 - -0.1 695,788 + -0.0 695,788 + -0.3 695,798 + -0.8 695,875 + +0.1 695,876 - +0.6 696,051 - DDA3937_RS03160 0.25 -0.6 696,061 + DDA3937_RS03160 0.26 -1.0 696,061 + DDA3937_RS03160 0.26 -0.0 696,062 - DDA3937_RS03160 0.27 +0.1 696,062 - DDA3937_RS03160 0.27 +0.1 696,143 + DDA3937_RS03160 0.41 -0.3 696,143 + -0.9 696,421 + -2.0 696,518 + -2.7 696,518 + +0.0 696,518 + -0.1 696,536 + -0.6 696,537 - -0.6 696,821 + DDA3937_RS03165 0.25 -0.5 696,821 + DDA3937_RS03165 0.25 +0.1 696,822 - DDA3937_RS03165 0.25 -0.6 696,822 - DDA3937_RS03165 0.25 -0.2 696,822 - DDA3937_RS03165 0.25 -0.5 696,946 + DDA3937_RS03165 0.38 +0.2 696,947 - DDA3937_RS03165 0.38 +1.8 697,032 + DDA3937_RS03165 0.47 +0.0 697,032 + DDA3937_RS03165 0.47 -0.5 697,032 + DDA3937_RS03165 0.47 -0.8 697,032 + DDA3937_RS03165 0.47 -1.2 697,032 + DDA3937_RS03165 0.47 +0.4 697,032 + DDA3937_RS03165 0.47 +0.3 697,032 + DDA3937_RS03165 0.47 +0.0 697,033 - DDA3937_RS03165 0.48 +0.1 697,033 - DDA3937_RS03165 0.48 +0.2 697,033 - DDA3937_RS03165 0.48 -0.3 697,033 - DDA3937_RS03165 0.48 -0.5 697,033 - DDA3937_RS03165 0.48 -2.7 697,033 - DDA3937_RS03165 0.48 -0.9 697,033 - DDA3937_RS03165 0.48 -0.5 697,036 + DDA3937_RS03165 0.48 +0.2 697,036 + DDA3937_RS03165 0.48 -0.7 697,037 - DDA3937_RS03165 0.48 -2.2 697,095 - DDA3937_RS03165 0.54 -0.7 697,095 - DDA3937_RS03165 0.54 -0.3 697,116 - DDA3937_RS03165 0.57 +0.7 697,116 - DDA3937_RS03165 0.57 +0.7 697,178 + DDA3937_RS03165 0.63 -0.2 697,178 + DDA3937_RS03165 0.63 +0.6 697,178 + DDA3937_RS03165 0.63 +0.7 697,178 + DDA3937_RS03165 0.63 -1.2 697,178 + DDA3937_RS03165 0.63 +0.4 697,179 - DDA3937_RS03165 0.64 +0.1 697,179 - DDA3937_RS03165 0.64 -0.6 697,179 - DDA3937_RS03165 0.64 +1.1 697,179 - DDA3937_RS03165 0.64 +0.2 697,179 - DDA3937_RS03165 0.64 +1.3 697,214 - DDA3937_RS03165 0.67 +0.4 697,241 - DDA3937_RS03165 0.70 -0.2 697,241 - DDA3937_RS03165 0.70 -2.1 697,333 + DDA3937_RS03165 0.80 +0.5 697,333 + DDA3937_RS03165 0.80 +0.3 697,334 - DDA3937_RS03165 0.80 +0.8 697,347 - DDA3937_RS03165 0.82 +0.5 697,424 - -1.0 697,443 + -0.1 697,444 - -1.2 697,455 + -0.7 697,455 + -1.0 697,455 + -0.7 697,455 + -0.6 697,455 + -1.0 697,455 + -1.4 697,455 + +0.4 697,456 - -1.0 697,456 - +2.5 697,456 - -1.9 697,456 - -0.0 697,456 - -0.8 697,456 - -0.9 697,456 - -0.5 697,458 + +0.3 697,478 + -1.7 697,478 + -0.9 697,479 - -0.1 697,580 + -0.1 697,580 + -0.1 697,580 + +1.1 697,580 + +0.2 697,580 + -0.5 697,581 - -0.0 697,581 - +0.5 697,581 - -0.5 697,671 + -1.1 697,672 - -0.3 697,672 - -0.5 697,672 - +0.2 697,694 + DDA3937_RS03170 0.13 -0.5 697,695 - DDA3937_RS03170 0.14 +0.5 697,743 + DDA3937_RS03170 0.26 -0.6 697,743 + DDA3937_RS03170 0.26 +1.1 697,743 + DDA3937_RS03170 0.26 -1.1 697,802 + DDA3937_RS03170 0.41 -0.8 697,814 - DDA3937_RS03170 0.44 -1.3 697,814 - DDA3937_RS03170 0.44 -0.4 697,845 - DDA3937_RS03170 0.52 -0.1 697,845 - DDA3937_RS03170 0.52 +0.5 697,848 - DDA3937_RS03170 0.52 +0.9 697,890 + DDA3937_RS03170 0.63 +0.2 697,891 - DDA3937_RS03170 0.63 +0.7 697,891 - DDA3937_RS03170 0.63 +1.7 697,891 - DDA3937_RS03170 0.63 +0.1 697,891 - DDA3937_RS03170 0.63 -0.2 697,929 + DDA3937_RS03170 0.73 -0.6 697,941 + DDA3937_RS03170 0.76 -0.6 697,941 + DDA3937_RS03170 0.76 +0.3 697,941 + DDA3937_RS03170 0.76 +0.3 697,942 - DDA3937_RS03170 0.76 +0.1 697,942 - DDA3937_RS03170 0.76 -0.5 698,000 + -1.2 698,034 + -0.4 698,035 - -0.9 698,072 + -0.5 698,084 - -0.5 698,084 - +0.3 698,123 + +0.1 698,123 + -0.9 698,123 + +0.5 698,123 + -0.9 698,124 - -0.6 698,124 - -0.5 698,124 - -1.9 698,124 - -0.6 698,181 + DDA3937_RS03175 0.21 -1.5 698,181 + DDA3937_RS03175 0.21 -0.6 698,182 - DDA3937_RS03175 0.22 +0.1 698,184 + DDA3937_RS03175 0.22 -1.0 698,185 - DDA3937_RS03175 0.22 -0.5 698,346 + DDA3937_RS03175 0.63 -0.0 698,346 + DDA3937_RS03175 0.63 -0.4 698,347 - DDA3937_RS03175 0.64 -0.1 698,347 - DDA3937_RS03175 0.64 -1.0 698,378 - DDA3937_RS03175 0.72 -0.5 698,399 + DDA3937_RS03175 0.77 +0.3 698,456 + +0.2 698,456 + -0.2 698,456 + +0.1 698,456 + -0.7 698,456 + +1.3 698,457 - +2.1 698,457 - -0.6 698,457 - -0.0 698,457 - +0.9 698,457 - -0.1 698,457 - -0.3 698,457 - +1.1 698,511 + -0.7 698,511 + -3.0 698,511 + +0.1 698,511 + -1.2 698,511 + -0.0 698,511 + -1.9 698,511 + +0.8 698,511 + +0.8 698,511 + -0.7 698,511 + -1.5 698,511 + +0.4 698,511 + +0.1 698,511 + -0.7 698,511 + +1.0 698,511 + -1.3 698,511 + -0.3 698,511 + +0.5 698,511 + +1.0 698,512 - +0.8 698,512 - -0.1 698,512 - +0.2 698,512 - -0.7 698,512 - -0.5 698,512 - -0.2 698,512 - +0.1 698,512 - -0.8 698,512 - -0.0 698,512 - +0.1 698,512 - -0.7 698,512 - -0.5 698,512 - -1.8 698,512 - +0.6 698,513 + -0.3 698,513 + -0.2 698,513 + -0.3 698,513 + +0.9 698,513 + -0.5 698,513 + +1.9 698,513 + +0.5 698,513 + +1.7 698,513 + -0.2 698,513 + +0.0 698,513 + +0.0 698,513 + +0.4 698,513 + -0.5 698,513 + -0.7
Or see this region's nucleotide sequence