Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02780 and DDA3937_RS02785 are separated by 105 nucleotides DDA3937_RS02785 and DDA3937_RS02790 are separated by 300 nucleotides DDA3937_RS02790 and DDA3937_RS02795 overlap by 4 nucleotides DDA3937_RS02795 and DDA3937_RS02800 are separated by 3 nucleotides DDA3937_RS02800 and DDA3937_RS02805 are separated by 198 nucleotides
DDA3937_RS02780: DDA3937_RS02780 - glutathione S-transferase family protein, at 614,136 to 615,122
_RS02780
DDA3937_RS02785: DDA3937_RS02785 - DoxX family protein, at 615,228 to 615,623
_RS02785
DDA3937_RS02790: DDA3937_RS02790 - YqjK-like family protein, at 615,924 to 616,229
_RS02790
DDA3937_RS02795: DDA3937_RS02795 - phage holin family protein, at 616,226 to 616,624
_RS02795
DDA3937_RS02800: DDA3937_RS02800 - DUF883 domain-containing protein, at 616,628 to 616,933
_RS02800
DDA3937_RS02805: DDA3937_RS02805 - EnvZ/OmpR regulon moderator MzrA, at 617,132 to 617,482
_RS02805
Position (kb)
615
616
617 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 614.946 kb on + strand, within DDA3937_RS02780 at 614.946 kb on + strand, within DDA3937_RS02780 at 614.947 kb on - strand, within DDA3937_RS02780 at 614.947 kb on - strand, within DDA3937_RS02780 at 614.950 kb on + strand, within DDA3937_RS02780 at 614.950 kb on + strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 615.082 kb on + strand at 615.083 kb on - strand at 615.083 kb on - strand at 615.100 kb on - strand at 615.114 kb on + strand at 615.142 kb on + strand at 615.142 kb on + strand at 615.143 kb on - strand at 615.185 kb on + strand at 615.215 kb on - strand at 615.291 kb on + strand, within DDA3937_RS02785 at 615.291 kb on + strand, within DDA3937_RS02785 at 615.291 kb on + strand, within DDA3937_RS02785 at 615.291 kb on + strand, within DDA3937_RS02785 at 615.292 kb on - strand, within DDA3937_RS02785 at 615.292 kb on - strand, within DDA3937_RS02785 at 615.292 kb on - strand, within DDA3937_RS02785 at 615.292 kb on - strand, within DDA3937_RS02785 at 615.292 kb on - strand, within DDA3937_RS02785 at 615.292 kb on - strand, within DDA3937_RS02785 at 615.295 kb on + strand, within DDA3937_RS02785 at 615.296 kb on - strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.509 kb on + strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.510 kb on - strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.511 kb on + strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.512 kb on - strand, within DDA3937_RS02785 at 615.513 kb on - strand, within DDA3937_RS02785 at 615.529 kb on + strand, within DDA3937_RS02785 at 615.529 kb on + strand, within DDA3937_RS02785 at 615.530 kb on - strand, within DDA3937_RS02785 at 615.564 kb on - strand, within DDA3937_RS02785 at 615.628 kb on - strand at 615.638 kb on - strand at 615.638 kb on - strand at 615.693 kb on - strand at 615.693 kb on - strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.721 kb on + strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.722 kb on - strand at 615.724 kb on + strand at 615.725 kb on - strand at 615.768 kb on + strand at 615.824 kb on + strand at 615.824 kb on + strand at 615.839 kb on + strand at 615.840 kb on - strand at 615.840 kb on - strand at 615.863 kb on + strand at 615.954 kb on + strand at 615.955 kb on - strand, within DDA3937_RS02790 at 615.966 kb on + strand, within DDA3937_RS02790 at 616.044 kb on + strand, within DDA3937_RS02790 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand, within DDA3937_RS02795 at 616.385 kb on + strand at 616.661 kb on - strand, within DDA3937_RS02800 at 616.702 kb on + strand, within DDA3937_RS02800 at 616.707 kb on - strand, within DDA3937_RS02800 at 616.843 kb on + strand, within DDA3937_RS02800 at 616.844 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.860 kb on - strand, within DDA3937_RS02800 at 616.947 kb on + strand at 616.984 kb on - strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.987 kb on + strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 616.988 kb on - strand at 617.024 kb on - strand at 617.087 kb on + strand at 617.088 kb on - strand at 617.088 kb on - strand at 617.165 kb on - strand at 617.165 kb on - strand at 617.187 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.207 kb on + strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805 at 617.208 kb on - strand, within DDA3937_RS02805
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 614,946 + DDA3937_RS02780 0.82 -0.2 614,946 + DDA3937_RS02780 0.82 +0.4 614,947 - DDA3937_RS02780 0.82 -0.3 614,947 - DDA3937_RS02780 0.82 +0.4 614,950 + DDA3937_RS02780 0.82 -2.7 614,950 + DDA3937_RS02780 0.82 -2.2 614,951 - DDA3937_RS02780 0.83 +0.7 614,951 - DDA3937_RS02780 0.83 -1.4 614,951 - DDA3937_RS02780 0.83 +0.8 614,951 - DDA3937_RS02780 0.83 -0.7 615,082 + -0.9 615,083 - +0.6 615,083 - -0.2 615,100 - -1.4 615,114 + +0.2 615,142 + +0.7 615,142 + -2.7 615,143 - +1.7 615,185 + +0.0 615,215 - -0.6 615,291 + DDA3937_RS02785 0.16 -1.3 615,291 + DDA3937_RS02785 0.16 -0.4 615,291 + DDA3937_RS02785 0.16 +1.5 615,291 + DDA3937_RS02785 0.16 +1.2 615,292 - DDA3937_RS02785 0.16 +0.9 615,292 - DDA3937_RS02785 0.16 +0.7 615,292 - DDA3937_RS02785 0.16 -1.8 615,292 - DDA3937_RS02785 0.16 -0.8 615,292 - DDA3937_RS02785 0.16 -0.9 615,292 - DDA3937_RS02785 0.16 -0.0 615,295 + DDA3937_RS02785 0.17 -0.8 615,296 - DDA3937_RS02785 0.17 -0.5 615,509 + DDA3937_RS02785 0.71 +0.3 615,509 + DDA3937_RS02785 0.71 +0.4 615,509 + DDA3937_RS02785 0.71 -0.4 615,509 + DDA3937_RS02785 0.71 +0.2 615,509 + DDA3937_RS02785 0.71 -0.5 615,509 + DDA3937_RS02785 0.71 -1.0 615,509 + DDA3937_RS02785 0.71 +0.4 615,509 + DDA3937_RS02785 0.71 -0.4 615,509 + DDA3937_RS02785 0.71 +0.0 615,510 - DDA3937_RS02785 0.71 -1.5 615,510 - DDA3937_RS02785 0.71 -0.2 615,510 - DDA3937_RS02785 0.71 +0.7 615,510 - DDA3937_RS02785 0.71 -0.5 615,510 - DDA3937_RS02785 0.71 -0.5 615,510 - DDA3937_RS02785 0.71 -0.2 615,510 - DDA3937_RS02785 0.71 -0.0 615,510 - DDA3937_RS02785 0.71 +0.0 615,510 - DDA3937_RS02785 0.71 -0.3 615,510 - DDA3937_RS02785 0.71 -0.2 615,510 - DDA3937_RS02785 0.71 -0.6 615,511 + DDA3937_RS02785 0.71 -0.4 615,511 + DDA3937_RS02785 0.71 -0.1 615,511 + DDA3937_RS02785 0.71 +0.6 615,511 + DDA3937_RS02785 0.71 -0.4 615,511 + DDA3937_RS02785 0.71 -0.2 615,511 + DDA3937_RS02785 0.71 -0.6 615,511 + DDA3937_RS02785 0.71 +0.7 615,511 + DDA3937_RS02785 0.71 -0.7 615,511 + DDA3937_RS02785 0.71 -0.3 615,511 + DDA3937_RS02785 0.71 -1.2 615,511 + DDA3937_RS02785 0.71 -0.6 615,511 + DDA3937_RS02785 0.71 -0.1 615,511 + DDA3937_RS02785 0.71 -0.6 615,511 + DDA3937_RS02785 0.71 +1.5 615,511 + DDA3937_RS02785 0.71 +0.3 615,511 + DDA3937_RS02785 0.71 -0.5 615,512 - DDA3937_RS02785 0.72 -0.7 615,512 - DDA3937_RS02785 0.72 -1.2 615,512 - DDA3937_RS02785 0.72 -0.3 615,512 - DDA3937_RS02785 0.72 -0.2 615,512 - DDA3937_RS02785 0.72 +0.6 615,512 - DDA3937_RS02785 0.72 +0.2 615,512 - DDA3937_RS02785 0.72 +0.5 615,512 - DDA3937_RS02785 0.72 -0.6 615,512 - DDA3937_RS02785 0.72 +0.8 615,512 - DDA3937_RS02785 0.72 +0.8 615,512 - DDA3937_RS02785 0.72 +0.3 615,512 - DDA3937_RS02785 0.72 +0.5 615,513 - DDA3937_RS02785 0.72 -0.4 615,529 + DDA3937_RS02785 0.76 -0.8 615,529 + DDA3937_RS02785 0.76 -0.4 615,530 - DDA3937_RS02785 0.76 +0.1 615,564 - DDA3937_RS02785 0.85 +0.5 615,628 - +0.4 615,638 - -1.6 615,638 - -0.1 615,693 - +1.3 615,693 - -0.7 615,721 + +0.9 615,721 + +1.2 615,721 + -0.3 615,721 + -1.3 615,721 + +0.2 615,722 - +1.5 615,722 - +0.1 615,722 - -1.7 615,722 - -0.3 615,724 + +1.1 615,725 - +0.0 615,768 + +1.0 615,824 + +0.4 615,824 + -2.0 615,839 + -0.0 615,840 - -0.8 615,840 - -0.3 615,863 + +0.1 615,954 + +1.2 615,955 - DDA3937_RS02790 0.10 -1.2 615,966 + DDA3937_RS02790 0.14 +3.2 616,044 + DDA3937_RS02790 0.39 -0.9 616,385 + DDA3937_RS02795 0.40 -1.1 616,385 + DDA3937_RS02795 0.40 +0.2 616,385 + DDA3937_RS02795 0.40 -0.2 616,385 + -0.8 616,661 - DDA3937_RS02800 0.11 -0.8 616,702 + DDA3937_RS02800 0.24 -0.5 616,707 - DDA3937_RS02800 0.26 -0.4 616,843 + DDA3937_RS02800 0.70 +0.3 616,844 - DDA3937_RS02800 0.71 -1.4 616,860 - DDA3937_RS02800 0.76 -0.4 616,860 - DDA3937_RS02800 0.76 -0.5 616,947 + -0.4 616,984 - +0.0 616,987 + +0.8 616,987 + -0.5 616,987 + -2.6 616,987 + +0.6 616,987 + +0.3 616,987 + -0.1 616,987 + -1.4 616,987 + -1.6 616,987 + +0.6 616,987 + +0.0 616,987 + +0.2 616,988 - +0.8 616,988 - -1.5 616,988 - +1.7 616,988 - -0.5 616,988 - +0.0 616,988 - -0.5 616,988 - -0.8 616,988 - +0.7 616,988 - -0.2 616,988 - -1.0 617,024 - +0.6 617,087 + -0.4 617,088 - -1.0 617,088 - -1.1 617,165 - -0.4 617,165 - -0.0 617,187 + DDA3937_RS02805 0.16 +1.1 617,207 + DDA3937_RS02805 0.21 -1.2 617,207 + DDA3937_RS02805 0.21 +0.9 617,207 + DDA3937_RS02805 0.21 -1.0 617,208 - DDA3937_RS02805 0.22 -1.4 617,208 - DDA3937_RS02805 0.22 -0.3
Or see this region's nucleotide sequence