Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02770 and DDA3937_RS02775 are separated by 109 nucleotides DDA3937_RS02775 and DDA3937_RS02780 are separated by 106 nucleotides
DDA3937_RS02770: DDA3937_RS02770 - pirin family protein, at 612,319 to 613,023
_RS02770
DDA3937_RS02775: DDA3937_RS02775 - LysR family transcriptional regulator, at 613,133 to 614,029
_RS02775
DDA3937_RS02780: DDA3937_RS02780 - glutathione S-transferase family protein, at 614,136 to 615,122
_RS02780
Position (kb) 613
614
615 Strain fitness (log2 ratio) -2
-1
0
1
2 at 612.205 kb on - strand at 612.285 kb on + strand at 612.340 kb on + strand at 612.340 kb on + strand at 612.341 kb on - strand at 612.372 kb on + strand at 612.419 kb on - strand, within DDA3937_RS02770 at 612.419 kb on - strand, within DDA3937_RS02770 at 612.460 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.465 kb on - strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.475 kb on + strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.476 kb on - strand, within DDA3937_RS02770 at 612.479 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.507 kb on + strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.508 kb on - strand, within DDA3937_RS02770 at 612.605 kb on + strand, within DDA3937_RS02770 at 612.711 kb on + strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.712 kb on - strand, within DDA3937_RS02770 at 612.723 kb on - strand, within DDA3937_RS02770 at 612.723 kb on - strand, within DDA3937_RS02770 at 612.848 kb on + strand, within DDA3937_RS02770 at 612.922 kb on + strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.923 kb on - strand, within DDA3937_RS02770 at 612.939 kb on - strand, within DDA3937_RS02770 at 612.959 kb on + strand at 612.959 kb on + strand at 612.960 kb on - strand at 612.960 kb on - strand at 612.981 kb on - strand at 613.014 kb on + strand at 613.015 kb on - strand at 613.015 kb on - strand at 613.026 kb on + strand at 613.026 kb on + strand at 613.044 kb on - strand at 613.050 kb on - strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.060 kb on + strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.103 kb on + strand at 613.158 kb on + strand at 613.158 kb on + strand at 613.159 kb on - strand at 613.159 kb on - strand at 613.159 kb on - strand at 613.159 kb on - strand at 613.250 kb on + strand, within DDA3937_RS02775 at 613.250 kb on + strand, within DDA3937_RS02775 at 613.250 kb on + strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.251 kb on - strand, within DDA3937_RS02775 at 613.252 kb on + strand, within DDA3937_RS02775 at 613.252 kb on + strand, within DDA3937_RS02775 at 613.252 kb on + strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand at 613.253 kb on - strand, within DDA3937_RS02775 at 613.253 kb on - strand, within DDA3937_RS02775 at 613.387 kb on + strand, within DDA3937_RS02775 at 613.488 kb on + strand, within DDA3937_RS02775 at 613.489 kb on - strand, within DDA3937_RS02775 at 613.627 kb on + strand, within DDA3937_RS02775 at 613.635 kb on - strand, within DDA3937_RS02775 at 613.650 kb on + strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.651 kb on - strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.652 kb on + strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.653 kb on - strand, within DDA3937_RS02775 at 613.779 kb on + strand, within DDA3937_RS02775 at 613.779 kb on + strand, within DDA3937_RS02775 at 613.779 kb on + strand, within DDA3937_RS02775 at 613.868 kb on + strand, within DDA3937_RS02775 at 613.868 kb on + strand, within DDA3937_RS02775 at 613.868 kb on + strand, within DDA3937_RS02775 at 613.914 kb on + strand, within DDA3937_RS02775 at 613.914 kb on + strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.915 kb on - strand, within DDA3937_RS02775 at 613.928 kb on - strand, within DDA3937_RS02775 at 613.928 kb on - strand, within DDA3937_RS02775 at 614.013 kb on + strand at 614.013 kb on + strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.036 kb on + strand at 614.037 kb on - strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.086 kb on + strand at 614.087 kb on - strand at 614.087 kb on - strand at 614.088 kb on + strand at 614.088 kb on + strand at 614.088 kb on + strand at 614.089 kb on - strand at 614.106 kb on - strand at 614.132 kb on + strand at 614.138 kb on - strand at 614.197 kb on - strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.222 kb on + strand at 614.223 kb on - strand at 614.223 kb on - strand at 614.223 kb on - strand at 614.236 kb on + strand, within DDA3937_RS02780 at 614.237 kb on - strand, within DDA3937_RS02780 at 614.274 kb on + strand, within DDA3937_RS02780 at 614.275 kb on - strand, within DDA3937_RS02780 at 614.275 kb on - strand, within DDA3937_RS02780 at 614.276 kb on + strand, within DDA3937_RS02780 at 614.276 kb on + strand, within DDA3937_RS02780 at 614.291 kb on - strand, within DDA3937_RS02780 at 614.305 kb on + strand, within DDA3937_RS02780 at 614.306 kb on - strand, within DDA3937_RS02780 at 614.306 kb on - strand, within DDA3937_RS02780 at 614.311 kb on + strand, within DDA3937_RS02780 at 614.312 kb on - strand, within DDA3937_RS02780 at 614.365 kb on + strand, within DDA3937_RS02780 at 614.365 kb on + strand, within DDA3937_RS02780 at 614.437 kb on + strand, within DDA3937_RS02780 at 614.438 kb on - strand, within DDA3937_RS02780 at 614.438 kb on - strand, within DDA3937_RS02780 at 614.507 kb on - strand, within DDA3937_RS02780 at 614.522 kb on + strand, within DDA3937_RS02780 at 614.522 kb on + strand, within DDA3937_RS02780 at 614.563 kb on + strand, within DDA3937_RS02780 at 614.564 kb on - strand, within DDA3937_RS02780 at 614.564 kb on - strand, within DDA3937_RS02780 at 614.615 kb on - strand, within DDA3937_RS02780 at 614.615 kb on - strand, within DDA3937_RS02780 at 614.615 kb on - strand, within DDA3937_RS02780 at 614.660 kb on + strand, within DDA3937_RS02780 at 614.660 kb on + strand, within DDA3937_RS02780 at 614.660 kb on + strand, within DDA3937_RS02780 at 614.661 kb on - strand, within DDA3937_RS02780 at 614.693 kb on + strand, within DDA3937_RS02780 at 614.764 kb on + strand, within DDA3937_RS02780 at 614.773 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.791 kb on + strand, within DDA3937_RS02780 at 614.792 kb on - strand, within DDA3937_RS02780 at 614.792 kb on - strand, within DDA3937_RS02780 at 614.910 kb on + strand, within DDA3937_RS02780 at 614.946 kb on + strand, within DDA3937_RS02780 at 614.946 kb on + strand, within DDA3937_RS02780 at 614.947 kb on - strand, within DDA3937_RS02780 at 614.947 kb on - strand, within DDA3937_RS02780 at 614.950 kb on + strand, within DDA3937_RS02780 at 614.950 kb on + strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780 at 614.951 kb on - strand, within DDA3937_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 612,205 - -0.1 612,285 + +1.2 612,340 + -0.6 612,340 + +0.6 612,341 - -0.4 612,372 + +1.3 612,419 - DDA3937_RS02770 0.14 +0.1 612,419 - DDA3937_RS02770 0.14 -0.6 612,460 - DDA3937_RS02770 0.20 -0.8 612,465 - DDA3937_RS02770 0.21 -1.8 612,465 - DDA3937_RS02770 0.21 -0.4 612,465 - DDA3937_RS02770 0.21 -0.2 612,475 + DDA3937_RS02770 0.22 +0.8 612,475 + DDA3937_RS02770 0.22 -1.9 612,475 + DDA3937_RS02770 0.22 -0.8 612,475 + DDA3937_RS02770 0.22 -0.7 612,475 + DDA3937_RS02770 0.22 +0.0 612,475 + DDA3937_RS02770 0.22 -1.0 612,476 - DDA3937_RS02770 0.22 +1.8 612,476 - DDA3937_RS02770 0.22 +2.2 612,476 - DDA3937_RS02770 0.22 -0.1 612,476 - DDA3937_RS02770 0.22 -0.6 612,476 - DDA3937_RS02770 0.22 -0.5 612,476 - DDA3937_RS02770 0.22 +0.6 612,479 + DDA3937_RS02770 0.23 -0.3 612,507 + DDA3937_RS02770 0.27 -1.0 612,507 + DDA3937_RS02770 0.27 +0.6 612,507 + DDA3937_RS02770 0.27 +0.3 612,508 - DDA3937_RS02770 0.27 -1.9 612,508 - DDA3937_RS02770 0.27 -0.7 612,508 - DDA3937_RS02770 0.27 +0.5 612,508 - DDA3937_RS02770 0.27 -0.2 612,508 - DDA3937_RS02770 0.27 +0.1 612,508 - DDA3937_RS02770 0.27 -0.8 612,508 - DDA3937_RS02770 0.27 +0.4 612,508 - DDA3937_RS02770 0.27 -0.2 612,605 + DDA3937_RS02770 0.41 -1.0 612,711 + DDA3937_RS02770 0.56 +0.8 612,712 - DDA3937_RS02770 0.56 -0.3 612,712 - DDA3937_RS02770 0.56 +0.2 612,712 - DDA3937_RS02770 0.56 +0.3 612,712 - DDA3937_RS02770 0.56 +1.2 612,712 - DDA3937_RS02770 0.56 +0.8 612,723 - DDA3937_RS02770 0.57 -0.2 612,723 - DDA3937_RS02770 0.57 +0.0 612,848 + DDA3937_RS02770 0.75 -0.4 612,922 + DDA3937_RS02770 0.86 +0.3 612,923 - DDA3937_RS02770 0.86 +0.7 612,923 - DDA3937_RS02770 0.86 -0.5 612,923 - DDA3937_RS02770 0.86 -0.8 612,939 - DDA3937_RS02770 0.88 +0.5 612,959 + -0.2 612,959 + -0.3 612,960 - -1.2 612,960 - +1.3 612,981 - +0.1 613,014 + -0.0 613,015 - +0.3 613,015 - -0.9 613,026 + +0.2 613,026 + -0.4 613,044 - +0.0 613,050 - -1.6 613,060 + -0.3 613,060 + -0.2 613,060 + -1.2 613,060 + +1.2 613,060 + -0.2 613,061 - -1.4 613,061 - +1.5 613,061 - -0.7 613,061 - +0.3 613,061 - +0.2 613,061 - -0.4 613,061 - -0.1 613,061 - -0.8 613,061 - -0.1 613,061 - +0.2 613,103 + -0.3 613,158 + -1.0 613,158 + +0.3 613,159 - +0.6 613,159 - +0.3 613,159 - +0.6 613,159 - +0.4 613,250 + DDA3937_RS02775 0.13 -0.4 613,250 + DDA3937_RS02775 0.13 -2.0 613,250 + DDA3937_RS02775 0.13 -1.7 613,251 - DDA3937_RS02775 0.13 -0.6 613,251 - DDA3937_RS02775 0.13 +0.7 613,251 - DDA3937_RS02775 0.13 +0.7 613,251 - DDA3937_RS02775 0.13 -0.5 613,251 - DDA3937_RS02775 0.13 +0.9 613,252 + DDA3937_RS02775 0.13 +0.1 613,252 + DDA3937_RS02775 0.13 -0.2 613,252 + DDA3937_RS02775 0.13 -1.8 613,253 - DDA3937_RS02775 0.13 -0.6 613,253 - DDA3937_RS02775 0.13 +0.2 613,253 - DDA3937_RS02775 0.13 -0.2 613,253 - +0.4 613,253 - DDA3937_RS02775 0.13 -1.5 613,253 - DDA3937_RS02775 0.13 -1.3 613,387 + DDA3937_RS02775 0.28 +1.1 613,488 + DDA3937_RS02775 0.40 -0.6 613,489 - DDA3937_RS02775 0.40 -0.1 613,627 + DDA3937_RS02775 0.55 +0.8 613,635 - DDA3937_RS02775 0.56 +0.2 613,650 + DDA3937_RS02775 0.58 +0.3 613,651 - DDA3937_RS02775 0.58 -1.4 613,651 - DDA3937_RS02775 0.58 +0.6 613,651 - DDA3937_RS02775 0.58 -1.4 613,651 - DDA3937_RS02775 0.58 -0.5 613,651 - DDA3937_RS02775 0.58 -0.5 613,651 - DDA3937_RS02775 0.58 -0.8 613,651 - DDA3937_RS02775 0.58 +0.5 613,652 + DDA3937_RS02775 0.58 +1.0 613,652 + DDA3937_RS02775 0.58 -0.1 613,652 + DDA3937_RS02775 0.58 -0.1 613,652 + DDA3937_RS02775 0.58 -1.5 613,652 + DDA3937_RS02775 0.58 -1.5 613,653 - DDA3937_RS02775 0.58 +0.3 613,653 - DDA3937_RS02775 0.58 +0.9 613,653 - DDA3937_RS02775 0.58 -2.0 613,653 - DDA3937_RS02775 0.58 +0.8 613,653 - DDA3937_RS02775 0.58 -0.6 613,653 - DDA3937_RS02775 0.58 -0.0 613,653 - DDA3937_RS02775 0.58 +1.2 613,653 - DDA3937_RS02775 0.58 -2.0 613,779 + DDA3937_RS02775 0.72 -1.2 613,779 + DDA3937_RS02775 0.72 -0.2 613,779 + DDA3937_RS02775 0.72 -0.8 613,868 + DDA3937_RS02775 0.82 -0.5 613,868 + DDA3937_RS02775 0.82 +0.2 613,868 + DDA3937_RS02775 0.82 -0.5 613,914 + DDA3937_RS02775 0.87 -0.8 613,914 + DDA3937_RS02775 0.87 -0.8 613,915 - DDA3937_RS02775 0.87 -1.6 613,915 - DDA3937_RS02775 0.87 +0.8 613,915 - DDA3937_RS02775 0.87 -0.6 613,915 - DDA3937_RS02775 0.87 -0.1 613,928 - DDA3937_RS02775 0.89 -0.5 613,928 - DDA3937_RS02775 0.89 -0.4 614,013 + -0.1 614,013 + -0.8 614,014 - -1.2 614,014 - -0.9 614,014 - -0.6 614,036 + +0.1 614,037 - +1.0 614,086 + +0.5 614,086 + -1.4 614,086 + -0.7 614,086 + +0.0 614,086 + +0.2 614,086 + -0.6 614,086 + -0.4 614,086 + -0.8 614,086 + -2.4 614,087 - -0.2 614,087 - +1.2 614,088 + +0.2 614,088 + +0.2 614,088 + +0.1 614,089 - -0.3 614,106 - -0.8 614,132 + -1.1 614,138 - +0.3 614,197 - -0.5 614,222 + -0.5 614,222 + -1.5 614,222 + -1.4 614,222 + +1.9 614,222 + +0.2 614,222 + +0.3 614,223 - -0.1 614,223 - -0.7 614,223 - -0.9 614,236 + DDA3937_RS02780 0.10 -0.7 614,237 - DDA3937_RS02780 0.10 -1.2 614,274 + DDA3937_RS02780 0.14 -0.6 614,275 - DDA3937_RS02780 0.14 -0.2 614,275 - DDA3937_RS02780 0.14 +0.2 614,276 + DDA3937_RS02780 0.14 +0.2 614,276 + DDA3937_RS02780 0.14 -0.4 614,291 - DDA3937_RS02780 0.16 +1.2 614,305 + DDA3937_RS02780 0.17 +0.7 614,306 - DDA3937_RS02780 0.17 +0.2 614,306 - DDA3937_RS02780 0.17 -0.4 614,311 + DDA3937_RS02780 0.18 -0.7 614,312 - DDA3937_RS02780 0.18 +0.5 614,365 + DDA3937_RS02780 0.23 -0.6 614,365 + DDA3937_RS02780 0.23 -0.3 614,437 + DDA3937_RS02780 0.30 +0.5 614,438 - DDA3937_RS02780 0.31 +0.2 614,438 - DDA3937_RS02780 0.31 -0.4 614,507 - DDA3937_RS02780 0.38 -1.0 614,522 + DDA3937_RS02780 0.39 +0.0 614,522 + DDA3937_RS02780 0.39 +1.0 614,563 + DDA3937_RS02780 0.43 +0.1 614,564 - DDA3937_RS02780 0.43 -2.2 614,564 - DDA3937_RS02780 0.43 -0.8 614,615 - DDA3937_RS02780 0.49 +0.5 614,615 - DDA3937_RS02780 0.49 -1.2 614,615 - DDA3937_RS02780 0.49 -0.2 614,660 + DDA3937_RS02780 0.53 -0.5 614,660 + DDA3937_RS02780 0.53 +0.0 614,660 + DDA3937_RS02780 0.53 -0.2 614,661 - DDA3937_RS02780 0.53 -1.0 614,693 + DDA3937_RS02780 0.56 -0.2 614,764 + DDA3937_RS02780 0.64 +0.8 614,773 + DDA3937_RS02780 0.65 -0.7 614,791 + DDA3937_RS02780 0.66 -1.3 614,791 + DDA3937_RS02780 0.66 -0.5 614,791 + DDA3937_RS02780 0.66 -0.8 614,791 + DDA3937_RS02780 0.66 -1.0 614,792 - DDA3937_RS02780 0.66 +0.4 614,792 - DDA3937_RS02780 0.66 -1.2 614,910 + DDA3937_RS02780 0.78 -0.1 614,946 + DDA3937_RS02780 0.82 -0.2 614,946 + DDA3937_RS02780 0.82 +0.4 614,947 - DDA3937_RS02780 0.82 -0.3 614,947 - DDA3937_RS02780 0.82 +0.4 614,950 + DDA3937_RS02780 0.82 -2.7 614,950 + DDA3937_RS02780 0.82 -2.2 614,951 - DDA3937_RS02780 0.83 +0.7 614,951 - DDA3937_RS02780 0.83 -1.4 614,951 - DDA3937_RS02780 0.83 +0.8 614,951 - DDA3937_RS02780 0.83 -0.7
Or see this region's nucleotide sequence