Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02625 and DDA3937_RS21820 are separated by 57 nucleotides DDA3937_RS21820 and DDA3937_RS02630 are separated by 282 nucleotides DDA3937_RS02630 and DDA3937_RS21825 are separated by 287 nucleotides DDA3937_RS21825 and DDA3937_RS22990 are separated by 11 nucleotides
DDA3937_RS02625: DDA3937_RS02625 - DUF1778 domain-containing protein, at 581,656 to 581,949
_RS02625
DDA3937_RS21820: DDA3937_RS21820 - GNAT family N-acetyltransferase, at 582,007 to 582,430
_RS21820
DDA3937_RS02630: DDA3937_RS02630 - TIGR04141 family sporadically distributed protein, at 582,713 to 584,452
_RS02630
DDA3937_RS21825: DDA3937_RS21825 - type II toxin-antitoxin system toxin CcdB, at 584,740 to 585,034
_RS21825
DDA3937_RS22990: DDA3937_RS22990 - type II toxin-antitoxin system CcdA family antitoxin, at 585,046 to 585,147
_RS22990
Position (kb) 582
583
584
585 Strain fitness (log2 ratio) -2
-1
0
1
2 at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.984 kb on + strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.985 kb on - strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.987 kb on + strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 581.988 kb on - strand at 582.015 kb on + strand at 582.016 kb on - strand at 582.109 kb on + strand, within DDA3937_RS21820 at 582.109 kb on + strand, within DDA3937_RS21820 at 582.109 kb on + strand, within DDA3937_RS21820 at 582.110 kb on - strand, within DDA3937_RS21820 at 582.112 kb on + strand, within DDA3937_RS21820 at 582.112 kb on + strand, within DDA3937_RS21820 at 582.112 kb on + strand at 582.134 kb on + strand, within DDA3937_RS21820 at 582.135 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.172 kb on - strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.272 kb on + strand, within DDA3937_RS21820 at 582.273 kb on - strand, within DDA3937_RS21820 at 582.293 kb on - strand, within DDA3937_RS21820 at 582.341 kb on + strand, within DDA3937_RS21820 at 582.341 kb on + strand, within DDA3937_RS21820 at 582.420 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.440 kb on + strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.441 kb on - strand at 582.484 kb on + strand at 582.488 kb on + strand at 582.489 kb on - strand at 582.489 kb on - strand at 582.494 kb on - strand at 582.494 kb on - strand at 582.494 kb on - strand at 582.522 kb on + strand at 582.523 kb on - strand at 582.523 kb on - strand at 582.523 kb on - strand at 582.526 kb on + strand at 582.526 kb on + strand at 582.527 kb on - strand at 582.539 kb on - strand at 582.561 kb on - strand at 582.646 kb on - strand at 582.707 kb on + strand at 582.707 kb on + strand at 582.769 kb on - strand at 582.812 kb on - strand at 582.858 kb on - strand at 582.859 kb on + strand at 582.944 kb on - strand, within DDA3937_RS02630 at 583.127 kb on - strand, within DDA3937_RS02630 at 583.294 kb on + strand, within DDA3937_RS02630 at 583.347 kb on + strand, within DDA3937_RS02630 at 583.367 kb on - strand, within DDA3937_RS02630 at 583.402 kb on + strand, within DDA3937_RS02630 at 583.733 kb on + strand, within DDA3937_RS02630 at 583.808 kb on - strand, within DDA3937_RS02630 at 584.180 kb on - strand, within DDA3937_RS02630 at 584.333 kb on + strand at 584.372 kb on - strand at 584.439 kb on + strand at 584.461 kb on + strand at 584.462 kb on - strand at 584.463 kb on + strand at 584.466 kb on - strand at 584.468 kb on - strand at 584.557 kb on - strand at 584.593 kb on + strand at 584.617 kb on - strand at 584.764 kb on - strand at 584.767 kb on - strand at 585.090 kb on + strand, within DDA3937_RS22990 at 585.150 kb on - strand at 585.230 kb on - strand at 585.249 kb on - strand at 585.264 kb on + strand at 585.265 kb on - strand at 585.299 kb on + strand at 585.432 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 581,984 + +0.6 581,984 + +0.4 581,984 + -1.4 581,984 + -1.8 581,984 + -0.6 581,984 + -0.5 581,984 + +1.6 581,985 - -1.0 581,985 - +0.4 581,985 - -0.4 581,987 + +0.9 581,987 + +0.3 581,987 + +1.0 581,987 + -0.9 581,988 - +0.9 581,988 - +0.6 581,988 - -0.0 581,988 - +0.2 581,988 - -0.0 582,015 + -1.0 582,016 - -0.7 582,109 + DDA3937_RS21820 0.24 -0.8 582,109 + DDA3937_RS21820 0.24 +0.7 582,109 + DDA3937_RS21820 0.24 +0.2 582,110 - DDA3937_RS21820 0.24 -1.6 582,112 + DDA3937_RS21820 0.25 +0.5 582,112 + DDA3937_RS21820 0.25 -1.5 582,112 + +1.2 582,134 + DDA3937_RS21820 0.30 +1.3 582,135 - DDA3937_RS21820 0.30 +1.5 582,172 - DDA3937_RS21820 0.39 +1.0 582,172 - DDA3937_RS21820 0.39 +0.3 582,172 - DDA3937_RS21820 0.39 -1.1 582,172 - DDA3937_RS21820 0.39 -0.2 582,272 + DDA3937_RS21820 0.62 +0.2 582,272 + DDA3937_RS21820 0.62 +0.7 582,272 + DDA3937_RS21820 0.62 -0.8 582,273 - DDA3937_RS21820 0.63 -0.7 582,293 - DDA3937_RS21820 0.67 -0.2 582,341 + DDA3937_RS21820 0.79 -0.3 582,341 + DDA3937_RS21820 0.79 +0.9 582,420 + +0.1 582,440 + +0.3 582,440 + -2.4 582,440 + +0.4 582,440 + -0.4 582,441 - +0.4 582,441 - +0.3 582,441 - +0.0 582,441 - -0.2 582,441 - -0.4 582,441 - +0.3 582,484 + +2.3 582,488 + -0.3 582,489 - -0.7 582,489 - -0.5 582,494 - +0.1 582,494 - -0.1 582,494 - -0.9 582,522 + +0.0 582,523 - -0.4 582,523 - +0.2 582,523 - +0.6 582,526 + +0.8 582,526 + -2.6 582,527 - +0.4 582,539 - -0.8 582,561 - -2.7 582,646 - +0.6 582,707 + -0.0 582,707 + -0.9 582,769 - +0.0 582,812 - -0.4 582,858 - -1.4 582,859 + -2.0 582,944 - DDA3937_RS02630 0.13 -0.7 583,127 - DDA3937_RS02630 0.24 +0.5 583,294 + DDA3937_RS02630 0.33 -1.4 583,347 + DDA3937_RS02630 0.36 +0.9 583,367 - DDA3937_RS02630 0.38 -0.0 583,402 + DDA3937_RS02630 0.40 +0.6 583,733 + DDA3937_RS02630 0.59 +0.6 583,808 - DDA3937_RS02630 0.63 +1.1 584,180 - DDA3937_RS02630 0.84 +1.8 584,333 + +0.1 584,372 - -0.4 584,439 + -0.4 584,461 + -0.1 584,462 - -1.5 584,463 + +0.8 584,466 - -0.6 584,468 - +0.6 584,557 - -0.3 584,593 + +0.2 584,617 - -0.3 584,764 - -0.1 584,767 - +0.3 585,090 + DDA3937_RS22990 0.43 +0.1 585,150 - -0.8 585,230 - -1.8 585,249 - +0.9 585,264 + -0.1 585,265 - -1.4 585,299 + -0.1 585,432 + +0.1
Or see this region's nucleotide sequence