Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02550

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02545 and DDA3937_RS02550 are separated by 0 nucleotidesDDA3937_RS02550 and DDA3937_RS02555 are separated by 16 nucleotides DDA3937_RS02545: DDA3937_RS02545 - heavy metal translocating P-type ATPase, at 561,977 to 564,415 _RS02545 DDA3937_RS02550: DDA3937_RS02550 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 564,416 to 564,847 _RS02550 DDA3937_RS02555: DDA3937_RS02555 - LacI family DNA-binding transcriptional regulator, at 564,864 to 565,886 _RS02555 Position (kb) 564 565Strain fitness (log2 ratio) -2 -1 0 1 2 3at 563.434 kb on + strandat 563.435 kb on - strand, within DDA3937_RS02545at 563.435 kb on - strand, within DDA3937_RS02545at 563.435 kb on - strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.519 kb on + strand, within DDA3937_RS02545at 563.520 kb on - strand, within DDA3937_RS02545at 563.611 kb on + strand, within DDA3937_RS02545at 563.612 kb on - strand, within DDA3937_RS02545at 563.893 kb on + strand, within DDA3937_RS02545at 563.893 kb on + strand, within DDA3937_RS02545at 563.893 kb on + strand, within DDA3937_RS02545at 563.894 kb on - strand, within DDA3937_RS02545at 564.104 kb on - strand, within DDA3937_RS02545at 564.104 kb on - strand, within DDA3937_RS02545at 564.374 kb on + strandat 564.375 kb on - strandat 564.375 kb on - strandat 564.378 kb on - strandat 564.388 kb on + strandat 564.389 kb on - strandat 564.489 kb on + strand, within DDA3937_RS02550at 564.489 kb on + strand, within DDA3937_RS02550at 564.522 kb on - strand, within DDA3937_RS02550at 564.522 kb on - strand, within DDA3937_RS02550at 564.530 kb on + strand, within DDA3937_RS02550at 564.530 kb on + strand, within DDA3937_RS02550at 564.531 kb on - strand, within DDA3937_RS02550at 564.531 kb on - strand, within DDA3937_RS02550at 564.531 kb on - strand, within DDA3937_RS02550at 564.533 kb on + strand, within DDA3937_RS02550at 564.533 kb on + strand, within DDA3937_RS02550at 564.534 kb on - strand, within DDA3937_RS02550at 564.568 kb on + strand, within DDA3937_RS02550at 564.569 kb on - strand, within DDA3937_RS02550at 564.569 kb on - strand, within DDA3937_RS02550at 564.832 kb on + strandat 564.885 kb on - strandat 564.923 kb on + strandat 564.923 kb on + strandat 564.948 kb on + strandat 564.949 kb on - strandat 565.168 kb on - strand, within DDA3937_RS02555at 565.168 kb on - strand, within DDA3937_RS02555at 565.334 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strandat 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.336 kb on + strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.337 kb on - strand, within DDA3937_RS02555at 565.455 kb on - strand, within DDA3937_RS02555at 565.710 kb on - strand, within DDA3937_RS02555at 565.710 kb on - strand, within DDA3937_RS02555at 565.711 kb on + strand, within DDA3937_RS02555at 565.711 kb on + strand, within DDA3937_RS02555at 565.711 kb on + strand, within DDA3937_RS02555at 565.712 kb on - strand, within DDA3937_RS02555

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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563,434 + +0.2
563,435 - DDA3937_RS02545 0.60 +0.2
563,435 - DDA3937_RS02545 0.60 +0.2
563,435 - DDA3937_RS02545 0.60 -0.3
563,519 + DDA3937_RS02545 0.63 +1.0
563,519 + DDA3937_RS02545 0.63 +0.0
563,519 + DDA3937_RS02545 0.63 -0.7
563,519 + DDA3937_RS02545 0.63 -0.2
563,519 + DDA3937_RS02545 0.63 +2.2
563,520 - DDA3937_RS02545 0.63 -0.1
563,611 + DDA3937_RS02545 0.67 +1.3
563,612 - DDA3937_RS02545 0.67 -0.5
563,893 + DDA3937_RS02545 0.79 -0.1
563,893 + DDA3937_RS02545 0.79 +0.0
563,893 + DDA3937_RS02545 0.79 -0.2
563,894 - DDA3937_RS02545 0.79 +0.1
564,104 - DDA3937_RS02545 0.87 -0.1
564,104 - DDA3937_RS02545 0.87 -2.1
564,374 + -1.5
564,375 - +0.0
564,375 - +0.4
564,378 - -0.2
564,388 + -0.4
564,389 - +0.3
564,489 + DDA3937_RS02550 0.17 -1.1
564,489 + DDA3937_RS02550 0.17 -0.0
564,522 - DDA3937_RS02550 0.25 -0.1
564,522 - DDA3937_RS02550 0.25 -0.3
564,530 + DDA3937_RS02550 0.26 -1.0
564,530 + DDA3937_RS02550 0.26 -0.2
564,531 - DDA3937_RS02550 0.27 +0.2
564,531 - DDA3937_RS02550 0.27 +0.3
564,531 - DDA3937_RS02550 0.27 -0.9
564,533 + DDA3937_RS02550 0.27 -0.7
564,533 + DDA3937_RS02550 0.27 -1.1
564,534 - DDA3937_RS02550 0.27 +0.2
564,568 + DDA3937_RS02550 0.35 -1.6
564,569 - DDA3937_RS02550 0.35 -0.8
564,569 - DDA3937_RS02550 0.35 -0.3
564,832 + -0.8
564,885 - +0.6
564,923 + +1.4
564,923 + +0.0
564,948 + -1.5
564,949 - +0.3
565,168 - DDA3937_RS02555 0.30 -0.8
565,168 - DDA3937_RS02555 0.30 +0.3
565,334 + DDA3937_RS02555 0.46 +0.2
565,336 + DDA3937_RS02555 0.46 -1.0
565,336 + DDA3937_RS02555 0.46 +0.7
565,336 + DDA3937_RS02555 0.46 +0.1
565,336 + DDA3937_RS02555 0.46 -0.5
565,336 + DDA3937_RS02555 0.46 +0.2
565,336 + DDA3937_RS02555 0.46 +0.3
565,336 + DDA3937_RS02555 0.46 -0.3
565,336 + +2.8
565,336 + DDA3937_RS02555 0.46 +0.6
565,336 + DDA3937_RS02555 0.46 +0.2
565,336 + DDA3937_RS02555 0.46 -0.4
565,336 + DDA3937_RS02555 0.46 -0.8
565,337 - DDA3937_RS02555 0.46 +0.6
565,337 - DDA3937_RS02555 0.46 -0.0
565,337 - DDA3937_RS02555 0.46 -0.1
565,337 - DDA3937_RS02555 0.46 -0.1
565,337 - DDA3937_RS02555 0.46 -2.5
565,337 - DDA3937_RS02555 0.46 -1.8
565,337 - DDA3937_RS02555 0.46 -0.4
565,337 - DDA3937_RS02555 0.46 +1.3
565,455 - DDA3937_RS02555 0.58 -1.2
565,710 - DDA3937_RS02555 0.83 +0.6
565,710 - DDA3937_RS02555 0.83 +1.5
565,711 + DDA3937_RS02555 0.83 +0.0
565,711 + DDA3937_RS02555 0.83 -0.4
565,711 + DDA3937_RS02555 0.83 +0.8
565,712 - DDA3937_RS02555 0.83 +0.2

Or see this region's nucleotide sequence